Ss1.1-Pig4-TMW8058N05.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTACAAAAGGATCCCAGCTCTCCACTCTACTCAGTGAAAACATTTGAAGAGCTGCGGCT AAAGGAAGAGTTACTAAAAGGGATCTATGCAATGGGATTTAACAGACCATCCAAAATTCA AGAGATGGCGCTCCCTATGATGCTGGCACACCCACCACAGAACCTCTGCCTGGCTCCTAC TTATGAATTGGCTCTGCAAACTGGCCGTGTGGTGGAACGGATGGGGAGATTCTGTGTGGA GGAATTGTTTCCACAGTGCCTCTGCCTGGCTCCTACTTATGAATTGGCTCTGCAAACTGG CCGTGTGGTGGAACGGATGGGGAGATTCTGTGTGGATGTTCAAGTGATGTACGCCATTCG AGGAAATCGAAATTGGTGTTTCAAGCGAAAATTAATTGATTTGACTAAGATTCGTGTGTT TGTCCTGGATGAAGCAGATGTGATGATCGACACACAAGGATTCTCAGACCAAAGCATTCG TATTCAAAGAGCTTTACCCTCTGGGTGCCAGATGCTCCTCTTTTCAGCGACCTTTGAAGA CTCTGTGTGGCAGTTTGCTGAGCGAATCATTCCTGACCCTAATGTGATAAAGTTACGAAA AGAGGAGCTGACCCTGAACAACATCCGACAGTATTATGTATTGTGTGGGAATAGGAAAGA CAAGTATCAAGCTCTGTGCAACATCTATGGAGGCATCACCATTGGCCAGGCCATCATCTT CTGCCAGACTCGTCGAAATGCCAAATGGTTGACTGTGGAGATGATGCAGGATGGCCACCA AGTGTCTTTGTTAAGCGGAGAGCTGACTGTGGATCAGCGAGCTGCCATCATTCAGAGGTT TCGGGATGGAAAGGAGAAAGTTCTTATAACGACCAACGTCTGTGCTAGAGGGATTGATGT GAAGCAGGTCACAATTGTTGTGAACTTTGACCTCCCTGTGAACCAAGCAGAGGAGCCAGA CTATGAGACCTACCTCCACCGCATCGGGCGGACAGGCCGCTTTGGGAAAAAAGGCCTTGC CTTCAACATGATCGAGGTGGATAAGCTGCCCCTGCTGATGAAGATCCAGGACCACTTTAA CAGCAATATTAAGCAACTTGATCCTGAAGACATGGATGAAATTGAAAAGATTGAATATTG AAGACAGAACTTTATCCTTTAAAAGTATTCTGGTTTATGTGAGAATGTCCCAGTAGGTTT TGAAGGTAATTTTTTATGTTGAGCCTTTTCAACATGAAACTGTCATATGTGGCAAAATAA ATGTCATGGTAGCCTTAGTTTTAAGACCTGAGGTCTTTTGAACTAAATCGATGTGAAAGC ACTTGATCCTTTTGAATAAAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTACAAAAGGATCCCAGCTCTCCACTCTACTCAGTGAAAACATTTGAAGAGCTGCGGCT AAAGGAAGAGTTACTAAAAGGGATCTATGCAATGGGATTTAACAGACCATCCAAAATTCA AGAGATGGCGCTCCCTATGATGCTGGCACACCCACCACAGAACCTCTGCCTGGCTCCTAC TTATGAATTGGCTCTGCAAACTGGCCGTGTGGTGGAACGGATGGGGAGATTCTGTGTGGA GGAATTGTTTCCACAGTGCCTCTGCCTGGCTCCTACTTATGAATTGGCTCTGCAAACTGG CCGTGTGGTGGAACGGATGGGGAGATTCTGTGTGGATGTTCAAGTGATGTACGCCATTCG AGGAAATCGAAATTGGTGTTTCAAGCGAAAATTAATTGATTTGACTAAGATTCGTGTGTT TGTCCTGGATGAAGCAGATGTGATGATCGACACACAAGGATTCTCAGACCAAAGCATTCG TATTCAAAGAGCTTTACCCTCTGGGTGCCAGATGCTCCTCTTTTCAGCGACCTTTGAAGA CTCTGTGTGGCAGTTTGCTGAGCGAATCATTCCTGACCCTAATGTGATAAAGTTACGAAA AGAGGAGCTGACCCTGAACAACATCCGACAGTATTATGTATTGTGTGGGAATAGGAAAGA CAAGTATCAAGCTCTGTGCAACATCTATGGAGGCATCACCATTGGCCAGGCCATCATCTT CTGCCAGACTCGTCGAAATGCCAAATGGTTGACTGTGGAGATGATGCAGGATGGCCACCA AGTGTCTTTGTTAAGCGGAGAGCTGACTGTGGATCAGCGAGCTGCCATCATTCAGAGGTT TCGGGATGGAAAGGAGAAAGTTCTTATAACGACCAACGTCTGTGCTAGAGGGATTGATGT GAAGCAGGTCACAATTGTTGTGAACTTTGACCTCCCTGTGAACCAAGCAGAGGAGCCAGA CTATGAGACCTACCTCCACCGCATCGGGCGGACAGGCCGCTTTGGGAAAAAAGGCCTTGC CTTCAACATGATCGAGGTGGATAAGCTGCCCCTGCTGATGAAGATCCAGGACCACTTTAA CAGCAATATTAAGCAACTTGATCCTGAAGACATGGATGAAATTGAAAAGATTGAATATTG AAGACAGAACTTTATCCTTTAAAAGTATTCTGGTTTATGTGAGAATGTCCCAGTAGGTTT TGAAGGTAATTTTTTATGTTGAGCCTTTTCAACATGAAACTGTCATATGTGGCAAAATAA ATGTCATGGTAGCCTTAGTTTTAAGACCTGAGGTCTTTTGAACTAAATCGATGTGAAAGC ACTTGATCCTTTTGAATAAAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1185-1301, + strand, RNAz p=0.578814 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1185-1301, + strand, RNAz p=0.578814 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC050360, + |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 254-371, gnl|bosTau2|chr29 (22133380-22133263) | |
| 254-371, gnl|canFam2|chr5 (11582674-11582513) | |
| 254-371, gnl|danRer3|chr6 (19755133-19755273) | |
| 254-371, gnl|dasNov1|scaffold_940 (8682-8845) | |
| 254-371, gnl|echTel1|scaffold_305886 (1672-1835) | |
| 254-371, gnl|fr1|chrUn (232475865-232476003) | |
| 254-371, gnl|galGal2|chrUn (11897742-11897592) | |
| 254-371, gnl|hg17|chr11 (125285445-125285612) | |
| 254-371, gnl|Hg17|chr11 (125285462-125285583) | |
| 254-371, gnl|loxAfr1|scaffold_19200 (20214-20051) | |
| 254-371, gnl|mm7|chr9 (35447776-35447612) | |
| 254-371, gnl|Mm7|chr9 (35447756-35447639) | |
| 254-371, gnl|monDom2|scaffold_15 (12704100-12704257) | |
| 254-371, gnl|oryCun1|scaffold_105024 (8265-8102) | |
| 254-371, gnl|panTro1|chr9 (127366711-127366878) | |
| 254-371, gnl|rheMac2|chr14 (124055819-124055982) | |
| 254-371, gnl|rn3|chr8 (35346093-35345928) | |
| 254-371, gnl|tetNig1|chrUn_random (120159331-120159212) | |
| 254-371, gnl|xenTro1|scaffold_1150 (68589-68730) | |
| 488-727, gnl|bosTau2|chr29 (22124388-22124149) | |
| 488-727, gnl|canFam2|chr5 (11574106-11573856) | |
| 488-727, gnl|canFam2|chr5 (11574042-11573860) | |
| 488-727, gnl|danRer3|chr6 (19757979-19758230) | |
| 488-727, gnl|danRer3|chr6 (19758041-19758226) | |
| 488-727, gnl|dasNov1|scaffold_940 (11200-11450) | |
| 488-727, gnl|dasNov1|scaffold_940 (11261-11445) | |
| 488-727, gnl|echTel1|scaffold_163871 (2112-1929) | |
| 488-727, gnl|echTel1|scaffold_52874 (674-925) | |
| 488-727, gnl|fr1|chrUn (50435716-50435460) | |
| 488-727, gnl|fr1|chrUn (50435649-50435464) | |
| 488-727, gnl|galGal2|chrUn (11896525-11896276) | |
| 488-727, gnl|hg17|chr11 (125292108-125292359) | |
| 488-727, gnl|Hg17|chr11 (125292117-125292356) | |
| 488-727, gnl|hg17|chr5 (60678711-60678895) | |
| 488-727, gnl|loxAfr1|scaffold_19200 (9920-9669) | |
| 488-727, gnl|loxAfr1|scaffold_19200 (9858-9673) | |
| 488-727, gnl|mm7|chr9 (35441831-35441582) | |
| 488-727, gnl|mm7|chr9 (35441771-35441586) | |
| 488-727, gnl|Mm7|chr9 (35441822-35441583) | |
| 488-727, gnl|monDom2|scaffold_15 (12707047-12707298) | |
| 488-727, gnl|monDom2|scaffold_15 (12707109-12707294) | |
| 488-727, gnl|oryCun1|scaffold_180270 (2852-3103) | |
| 488-727, gnl|oryCun1|scaffold_180270 (2914-3099) | |
| 488-727, gnl|panTro1|chr4_random (38079117-38079301) | |
| 488-727, gnl|panTro1|chr9 (127373386-127373637) | |
| 488-727, gnl|rheMac2|chr14 (124059612-124059863) | |
| 488-727, gnl|rheMac2|chr6 (59054335-59054519) | |
| 488-727, gnl|rn3|chr8 (35340642-35340391) | |
| 488-727, gnl|rn3|chr8 (35340580-35340396) | |
| 488-727, gnl|tetNig1|chrUn_random (120158883-120158626) | |
| 488-727, gnl|tetNig1|chrUn_random (120158815-120158630) | |
| 488-727, gnl|xenTro1|scaffold_1150 (78059-78307) | |
| 506-726, gnl|bosTau2|chr18 (444781-444561) | |
| 506-726, gnl|Hg17|chr16 (68921251-68921471) | |
| 506-726, gnl|Mm7|chr8 (109611118-109610898) | |
| 889-1035, gnl|bosTau2|chr18 (443155-443009) | |
| 889-1035, gnl|Hg17|chr16 (68924370-68924516) | |
| 889-1035, gnl|Mm7|chr8 (109609019-109608873) | |
| 1076-1344, gnl|bosTau2|chr29 (22118256-22117992) | |
| 1076-1344, gnl|Hg17|chr11 (125297920-125298194) | |
| 1076-1344, gnl|Mm7|chr9 (35436866-35436588) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 254-371, gnl|bosTau2|chr29 (22133380-22133263) | |
| 254-371, gnl|canFam2|chr5 (11582674-11582513) | |
| 254-371, gnl|danRer3|chr6 (19755133-19755273) | |
| 254-371, gnl|dasNov1|scaffold_940 (8682-8845) | |
| 254-371, gnl|echTel1|scaffold_305886 (1672-1835) | |
| 254-371, gnl|fr1|chrUn (232475865-232476003) | |
| 254-371, gnl|galGal2|chrUn (11897742-11897592) | |
| 254-371, gnl|hg17|chr11 (125285445-125285612) | |
| 254-371, gnl|Hg17|chr11 (125285462-125285583) | |
| 254-371, gnl|loxAfr1|scaffold_19200 (20214-20051) | |
| 254-371, gnl|mm7|chr9 (35447776-35447612) | |
| 254-371, gnl|Mm7|chr9 (35447756-35447639) | |
| 254-371, gnl|monDom2|scaffold_15 (12704100-12704257) | |
| 254-371, gnl|oryCun1|scaffold_105024 (8265-8102) | |
| 254-371, gnl|panTro1|chr9 (127366711-127366878) | |
| 254-371, gnl|rheMac2|chr14 (124055819-124055982) | |
| 254-371, gnl|rn3|chr8 (35346093-35345928) | |
| 254-371, gnl|tetNig1|chrUn_random (120159331-120159212) | |
| 254-371, gnl|xenTro1|scaffold_1150 (68589-68730) | |
| 488-727, gnl|bosTau2|chr29 (22124388-22124149) | |
| 488-727, gnl|canFam2|chr5 (11574106-11573856) | |
| 488-727, gnl|canFam2|chr5 (11574042-11573860) | |
| 488-727, gnl|danRer3|chr6 (19757979-19758230) | |
| 488-727, gnl|danRer3|chr6 (19758041-19758226) | |
| 488-727, gnl|dasNov1|scaffold_940 (11200-11450) | |
| 488-727, gnl|dasNov1|scaffold_940 (11261-11445) | |
| 488-727, gnl|echTel1|scaffold_163871 (2112-1929) | |
| 488-727, gnl|echTel1|scaffold_52874 (674-925) | |
| 488-727, gnl|fr1|chrUn (50435716-50435460) | |
| 488-727, gnl|fr1|chrUn (50435649-50435464) | |
| 488-727, gnl|galGal2|chrUn (11896525-11896276) | |
| 488-727, gnl|hg17|chr11 (125292108-125292359) | |
| 488-727, gnl|Hg17|chr11 (125292117-125292356) | |
| 488-727, gnl|hg17|chr5 (60678711-60678895) | |
| 488-727, gnl|loxAfr1|scaffold_19200 (9920-9669) | |
| 488-727, gnl|loxAfr1|scaffold_19200 (9858-9673) | |
| 488-727, gnl|mm7|chr9 (35441831-35441582) | |
| 488-727, gnl|mm7|chr9 (35441771-35441586) | |
| 488-727, gnl|Mm7|chr9 (35441822-35441583) | |
| 488-727, gnl|monDom2|scaffold_15 (12707047-12707298) | |
| 488-727, gnl|monDom2|scaffold_15 (12707109-12707294) | |
| 488-727, gnl|oryCun1|scaffold_180270 (2852-3103) | |
| 488-727, gnl|oryCun1|scaffold_180270 (2914-3099) | |
| 488-727, gnl|panTro1|chr4_random (38079117-38079301) | |
| 488-727, gnl|panTro1|chr9 (127373386-127373637) | |
| 488-727, gnl|rheMac2|chr14 (124059612-124059863) | |
| 488-727, gnl|rheMac2|chr6 (59054335-59054519) | |
| 488-727, gnl|rn3|chr8 (35340642-35340391) | |
| 488-727, gnl|rn3|chr8 (35340580-35340396) | |
| 488-727, gnl|tetNig1|chrUn_random (120158883-120158626) | |
| 488-727, gnl|tetNig1|chrUn_random (120158815-120158630) | |
| 488-727, gnl|xenTro1|scaffold_1150 (78059-78307) | |
| 506-726, gnl|bosTau2|chr18 (444781-444561) | |
| 506-726, gnl|Hg17|chr16 (68921251-68921471) | |
| 506-726, gnl|Mm7|chr8 (109611118-109610898) | |
| 889-1035, gnl|bosTau2|chr18 (443155-443009) | |
| 889-1035, gnl|Hg17|chr16 (68924370-68924516) | |
| 889-1035, gnl|Mm7|chr8 (109609019-109608873) | |
| 1076-1344, gnl|bosTau2|chr29 (22118256-22117992) | |
| 1076-1344, gnl|Hg17|chr11 (125297920-125298194) | |
| 1076-1344, gnl|Mm7|chr9 (35436866-35436588) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cte (0.87822) | |
| fhi (0.169578) | |
| tra (0.123092) | |
| spc (0.113366) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| fhi (0.169578) | |
| tra (0.123092) | |
| spc (0.113366) |