Non-Coding RNA Search

Ss1.1-Pig4-TMW8058N07.3

Sequence:


               
               GGTTAGGACGCCGGGCGAGCGGAGCTGCTTCTGGCGCTCCTTGCCGTCCCGGGGCGGGGG
CGGGCGCGGGCGGGCGCCGCTCCGGGGATGTAGTTGGTGCGGGCGCCGGGCAGGACCGAG
CGGCAGCCCGGGTTCCCGCTCTTCAGAGCGAATGGTCACTCCCCCGCGGGGAGGGCGATC
CGACCAGCTTTTCCTTGGGTCGGGGGGCCCCCGCGGGCTCGGGGCAGGGGCTCACCTGTG
GCACCCACGCTCGGCCTGGTTGGACTTGTCGGCGTCACCGCCGCGGACCTCGCTTTGGGC
CATGACCAGATATGATTGGTGATTACAAGGTTCCTATATAAATTAATTCTTGTCCACTCC
TTGGGATTTGAAGAGAAAATGCCTGGTGTCATACCTAGTGAAAGTAATGGGCTTTCAAGA
GGTAGTCCATCCAAAAAAAACAGACTTTCCTTGAAGTTTTTTCAGAAAAAGGAAACCAAG
AGAGCCTTGGATTTCACAGATTCTCAAGAAAATGAAGAAAAAACTTCTGAATACAGAGGA
TCTGAAGTCGATCAAGTTGTTCCTGCAGCACAGTCCTCACCTATAAACTGTGAGAAGAGA
GAAAACTTGTTACCATTTGTGGGACTGAATAATCTCGGCAATACTTGTTATCTTAATAGT
ATCCTTCAGGTATTATATTTCTGTCCTGGTTTTAAATCTGGAGTGAAGCACTTATTTAAT
ATTATTTCAAGGAAGAAGGAAGCCCTGAAAGATGAAGCCAATCAAAAAGAAAAGGGAAAT
GGAAATTGCAAAGAAGATTCTTTAGCAAGTTATGAACTAATATGCAGCTTACAGTCCTTG
ATCATTTCAGTTGAACAGCTTCAGGCTAGTTTTCTCTTAAATCCAGAGAAATATACTGAT
GAACTTGCTACTCAGCCAAGGCGACTGCTTAACACACTCAGGGAACTCAACCCTATGTAT
GAAGGATATCTACAGCATGATGCACAGGAAGTGTTACAGTGTATTTTGGGAAATATTCAA
GAAACATGCCAACTCTTAAAAAAAGAAGAAGTAAAAAATGTGACAGAGTTATCTAAGGTA
GAAGAAAAACATCAGAAAGAGGAAATGAGTGGTAATGACAGCATGGAGATGGACAACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAGGACGCCGGGCGAGCGGAGCTGCTTCTGGCGCTCCTTGCCGTCCCGGGGCGGGGG
CGGGCGCGGGCGGGCGCCGCTCCGGGGATGTAGTTGGTGCGGGCGCCGGGCAGGACCGAG
CGGCAGCCCGGGTTCCCGCTCTTCAGAGCGAATGGTCACTCCCCCGCGGGGAGGGCGATC
CGACCAGCTTTTCCTTGGGTCGGGGGGCCCCCGCGGGCTCGGGGCAGGGGCTCACCTGTG
GCACCCACGCTCGGCCTGGTTGGACTTGTCGGCGTCACCGCCGCGGACCTCGCTTTGGGC
CATGACCAGATATGATTGGTGATTACAAGGTTCCTATATAAATTAATTCTTGTCCACTCC
TTGGGATTTGAAGAGAAAATGCCTGGTGTCATACCTAGTGAAAGTAATGGGCTTTCAAGA
GGTAGTCCATCCAAAAAAAACAGACTTTCCTTGAAGTTTTTTCAGAAAAAGGAAACCAAG
AGAGCCTTGGATTTCACAGATTCTCAAGAAAATGAAGAAAAAACTTCTGAATACAGAGGA
TCTGAAGTCGATCAAGTTGTTCCTGCAGCACAGTCCTCACCTATAAACTGTGAGAAGAGA
GAAAACTTGTTACCATTTGTGGGACTGAATAATCTCGGCAATACTTGTTATCTTAATAGT
ATCCTTCAGGTATTATATTTCTGTCCTGGTTTTAAATCTGGAGTGAAGCACTTATTTAAT
ATTATTTCAAGGAAGAAGGAAGCCCTGAAAGATGAAGCCAATCAAAAAGAAAAGGGAAAT
GGAAATTGCAAAGAAGATTCTTTAGCAAGTTATGAACTAATATGCAGCTTACAGTCCTTG
ATCATTTCAGTTGAACAGCTTCAGGCTAGTTTTCTCTTAAATCCAGAGAAATATACTGAT
GAACTTGCTACTCAGCCAAGGCGACTGCTTAACACACTCAGGGAACTCAACCCTATGTAT
GAAGGATATCTACAGCATGATGCACAGGAAGTGTTACAGTGTATTTTGGGAAATATTCAA
GAAACATGCCAACTCTTAAAAAAAGAAGAAGTAAAAAATGTGACAGAGTTATCTAAGGTA
GAAGAAAAACATCAGAAAGAGGAAATGAGTGGTAATGACAGCATGGAGATGGACAACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27696471|gb|AAH44050.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27696471|gb|AAH44050.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-546, + strand, RNAz p=0.957891

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-546, + strand, RNAz p=0.957891

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003368, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003368, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-152, gnl|bosTau2|chr15 (19064499-19064650)
               

               
               1-152, gnl|Hg17|chr1 (62614789-62614937)
               


               
               302-546, gnl|bosTau2|chr3 (56734219-56734463)
               

               
               302-546, gnl|Hg17|chr1 (62617483-62617727)
               

               
               302-546, gnl|Mm7|chr4 (98319035-98319279)
               


               
               550-672, gnl|bosTau2|chr3 (56735951-56736073)
               

               
               550-672, gnl|Hg17|chr1 (62619181-62619303)
               

               
               550-672, gnl|Mm7|chr4 (98320842-98320964)
               


               
               940-1140, gnl|bosTau2|chr3 (56738855-56739055)
               

               
               940-1140, gnl|Hg17|chr1 (62622428-62622634)
               

               
               940-1140, gnl|Mm7|chr4 (98323465-98323671)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-152, gnl|bosTau2|chr15 (19064499-19064650)
               

               
               1-152, gnl|Hg17|chr1 (62614789-62614937)
               


               
               302-546, gnl|bosTau2|chr3 (56734219-56734463)
               

               
               302-546, gnl|Hg17|chr1 (62617483-62617727)
               

               
               302-546, gnl|Mm7|chr4 (98319035-98319279)
               


               
               550-672, gnl|bosTau2|chr3 (56735951-56736073)
               

               
               550-672, gnl|Hg17|chr1 (62619181-62619303)
               

               
               550-672, gnl|Mm7|chr4 (98320842-98320964)
               


               
               940-1140, gnl|bosTau2|chr3 (56738855-56739055)
               

               
               940-1140, gnl|Hg17|chr1 (62622428-62622634)
               

               
               940-1140, gnl|Mm7|chr4 (98323465-98323671)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               sug (0.127291)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               sug (0.127291)

	1-152, gnl\|bosTau2\|chr15 (19064499-19064650)
	1-152, gnl\|Hg17\|chr1 (62614789-62614937)

	302-546, gnl\|bosTau2\|chr3 (56734219-56734463)
	302-546, gnl\|Hg17\|chr1 (62617483-62617727)
	302-546, gnl\|Mm7\|chr4 (98319035-98319279)

	550-672, gnl\|bosTau2\|chr3 (56735951-56736073)
	550-672, gnl\|Hg17\|chr1 (62619181-62619303)
	550-672, gnl\|Mm7\|chr4 (98320842-98320964)

	940-1140, gnl\|bosTau2\|chr3 (56738855-56739055)
	940-1140, gnl\|Hg17\|chr1 (62622428-62622634)
	940-1140, gnl\|Mm7\|chr4 (98323465-98323671)