Non-Coding RNA Search

Ss1.1-Pig4-TMW8058N14.3

Sequence:


               
               GCAGCGTGAGGAGGGCGACGTGACCGTGTGCTTCAAGCTGAAGCACGATTTCAAAAACCT
GGCGGCGCCCATCCGCCCCGTCGAGGAGGCTGACCCGGGGGCGGAGGTCAGCTGGCTCAC
GCAGCACGTGGAACTCAGCTTGGGGCCGCTTCTCCCTTGACGCGGTCCGGCCCCCGGGGG
CAGCTCCCGAGGCCCGTGTCACCACGCCCCGCGTCACCATATGGAAGCCGCTGCTGCGTC
GGGCCTTGTTCGTCCAGATGTGTCCCCGTGCACGACGGAATCCTGCTCCTGCGAGCCTCG
GGCGGAGGCAGGGCGTTGGGAACTCGGGGCGCCTGCCGTTCTCGGCCCCCTCCCGCCTGA
CACCCGCGCTGCGGCGGCGGCGGCATCTCCCGCTCTGAACCCCCTGCACGCCGACCGCCG
CCGCGGATCCCAGCCCGGGAAGGGGCGTGGCGTTAGATTGACCCCCGTGGGAACGGGTGT
CAGGAAGGATCAGGCTCGCAGGTGACACGTAGAAGAACCGAAAGGTAGACCTGCCCTCGG
TGACCCCCGTGCTGGTCTCAGGACACCAGCGGCTTTTTGCATCCTAGTCGATATAGTCCA
GCGCTCTGAACCTGCCCTTCGCTGCCCAGCCTGGCTCCCGTCCTGCCCTGCATTTCCATT
CGCCAGGAAGGTAGACCTGGCCCGGTGTCCTGCATTTGGTTATGACAGGAACCTCTGTGA
AATAGGCAAGGCGCCCCCATTTGAACGAATATAGGCTACGCACGTAGAGTTGCTCATGGC
ATTTTTTTTCCCCAGTAGAACATGGAACTTTTAGGAAGAGCTTGAGAAGCAAGCAATTAC
GTGACATGTCAAGGGGGTGGCAGACTCTGCTCAGCCAGGGGTTGCCACTGCCCCCTTCTC
CCCCGCTCCGCCTCTTTAAGTCGTGCTGAGGATTTGGGACCCTGGAAAGAGCCCAGAGAA
ATCTCGGCCGACACGCTCACCTCTGGGATGCAGAAGACGTGCCAGGGGTTAGATTTTTAG
CATGATCTGAACGAGCGTTCTTGCATTGATTCGAAGGGAAAATGAACATTTACAGTCTCT
TGAATCCAAAACAGGACATCGAGGGGGGGAAAAAACCCTTGCCCCTTTCCCGAGTGTAAG
ACTTCTGCCCTGTGGTGTGTCAACTAAGGTGGTTACAACCATAAAGCGAAAACTAGTTCA
GCAGGGCGCCTGGGGTACTTGCCCGACAGCACTCTTGCTGCTTTCACTTGGTTTCCTGGA
GTTGGATCGCTAACCATAATTTCTGTGGTGTTTCCTAAACGTGAGACTTGACAAAGCAGA
CCACCGGCTGACTCCTTTTGCTGTAAATGTATTAGCAAGTGGCCCACAGAAGTTTGGGGA
AAAGAGAAGTTTCCTGTTGACCCTGGTTATGTTTGAAGTTCAAGCCCTTAGTCTTAAGAG
TTACGATGTATATAGTGATCTAGAATACAGACAGGATGTGGTAGCTTGTCAGCTGCCCTT
GGAAGGTGAAAATCTCTAGGAAGCCTTTCAGTGACACTAAATAGGATTCTTAAGACGAAG
CCAGTACAATGTCCCACAGAGTAATATATATGCTGCAGTGTAAGAAAGGAAACATGTGGG
TCTCTAGTATGTGACGGTAATAAGGTCTAGACTCTTAGGATGTGGGGCAAGGGGTCGTGT
AATGACAAATTTGCAGACCGTAGAAGTAGTTTAGCGTTTCGTGAGCCCACAGAGTGTCAA
AATAGTGTTTATTTCACTGCCCGCGCGAGCCTGCTCTGGGGCCGTCCCTCCGCGTTTGCC
GGTGGAGGAGCTGGGCGTCTGAGGGGAGCACAGCATCCTGTGTTCTCACACGTGCGTGGC
ACGTAGCTGGTGTTTCTTCCCAGAAGTAGTAGCGTGACTCAGAAACAAAATGACTGCTGA
TCACAGAATGTTTTTCCTCAGAAGCCGAATTAACCAGCAGGATCACAGAGCCATTGATGT
AGTGTTTCCTCAAGATAGTTCTCGGTGCAAGCGGGTGATTCCTTGTGTCAGTAGAAATGG
TCCTGCACCTGCAGCTGGTGAACTGGGAACTTTATTTGTTCCCTTTTATCTTAGATCAGG
TGCAAGATTTTTACCACATAGCTGTGCACCATCGCAGGCCAGTTAGCTGCCCTTAGCACT
AGAAACCACCGTGTCGGGAACTTGAGGCAAAGTGAGTCTGAATTTGTGATCGATGAGCCC
ACCGGAGTGTTCCTTTGTTCACAGTGCTTGTGGGCATAATGAGCAAAGTGCCACGCACAT
TTGCGGAAGAAACATCCTTTTTGGTCCCTTTTGGGGATGAGAGGCACCTCTTGATGATGA
GTGACACGTACTCTCTTGCCTCATTGCTTAACTTAACGGCGTTCAATAAAGCAGACCAAG
CTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGTGAGGAGGGCGACGTGACCGTGTGCTTCAAGCTGAAGCACGATTTCAAAAACCT
GGCGGCGCCCATCCGCCCCGTCGAGGAGGCTGACCCGGGGGCGGAGGTCAGCTGGCTCAC
GCAGCACGTGGAACTCAGCTTGGGGCCGCTTCTCCCTTGACGCGGTCCGGCCCCCGGGGG
CAGCTCCCGAGGCCCGTGTCACCACGCCCCGCGTCACCATATGGAAGCCGCTGCTGCGTC
GGGCCTTGTTCGTCCAGATGTGTCCCCGTGCACGACGGAATCCTGCTCCTGCGAGCCTCG
GGCGGAGGCAGGGCGTTGGGAACTCGGGGCGCCTGCCGTTCTCGGCCCCCTCCCGCCTGA
CACCCGCGCTGCGGCGGCGGCGGCATCTCCCGCTCTGAACCCCCTGCACGCCGACCGCCG
CCGCGGATCCCAGCCCGGGAAGGGGCGTGGCGTTAGATTGACCCCCGTGGGAACGGGTGT
CAGGAAGGATCAGGCTCGCAGGTGACACGTAGAAGAACCGAAAGGTAGACCTGCCCTCGG
TGACCCCCGTGCTGGTCTCAGGACACCAGCGGCTTTTTGCATCCTAGTCGATATAGTCCA
GCGCTCTGAACCTGCCCTTCGCTGCCCAGCCTGGCTCCCGTCCTGCCCTGCATTTCCATT
CGCCAGGAAGGTAGACCTGGCCCGGTGTCCTGCATTTGGTTATGACAGGAACCTCTGTGA
AATAGGCAAGGCGCCCCCATTTGAACGAATATAGGCTACGCACGTAGAGTTGCTCATGGC
ATTTTTTTTCCCCAGTAGAACATGGAACTTTTAGGAAGAGCTTGAGAAGCAAGCAATTAC
GTGACATGTCAAGGGGGTGGCAGACTCTGCTCAGCCAGGGGTTGCCACTGCCCCCTTCTC
CCCCGCTCCGCCTCTTTAAGTCGTGCTGAGGATTTGGGACCCTGGAAAGAGCCCAGAGAA
ATCTCGGCCGACACGCTCACCTCTGGGATGCAGAAGACGTGCCAGGGGTTAGATTTTTAG
CATGATCTGAACGAGCGTTCTTGCATTGATTCGAAGGGAAAATGAACATTTACAGTCTCT
TGAATCCAAAACAGGACATCGAGGGGGGGAAAAAACCCTTGCCCCTTTCCCGAGTGTAAG
ACTTCTGCCCTGTGGTGTGTCAACTAAGGTGGTTACAACCATAAAGCGAAAACTAGTTCA
GCAGGGCGCCTGGGGTACTTGCCCGACAGCACTCTTGCTGCTTTCACTTGGTTTCCTGGA
GTTGGATCGCTAACCATAATTTCTGTGGTGTTTCCTAAACGTGAGACTTGACAAAGCAGA
CCACCGGCTGACTCCTTTTGCTGTAAATGTATTAGCAAGTGGCCCACAGAAGTTTGGGGA
AAAGAGAAGTTTCCTGTTGACCCTGGTTATGTTTGAAGTTCAAGCCCTTAGTCTTAAGAG
TTACGATGTATATAGTGATCTAGAATACAGACAGGATGTGGTAGCTTGTCAGCTGCCCTT
GGAAGGTGAAAATCTCTAGGAAGCCTTTCAGTGACACTAAATAGGATTCTTAAGACGAAG
CCAGTACAATGTCCCACAGAGTAATATATATGCTGCAGTGTAAGAAAGGAAACATGTGGG
TCTCTAGTATGTGACGGTAATAAGGTCTAGACTCTTAGGATGTGGGGCAAGGGGTCGTGT
AATGACAAATTTGCAGACCGTAGAAGTAGTTTAGCGTTTCGTGAGCCCACAGAGTGTCAA
AATAGTGTTTATTTCACTGCCCGCGCGAGCCTGCTCTGGGGCCGTCCCTCCGCGTTTGCC
GGTGGAGGAGCTGGGCGTCTGAGGGGAGCACAGCATCCTGTGTTCTCACACGTGCGTGGC
ACGTAGCTGGTGTTTCTTCCCAGAAGTAGTAGCGTGACTCAGAAACAAAATGACTGCTGA
TCACAGAATGTTTTTCCTCAGAAGCCGAATTAACCAGCAGGATCACAGAGCCATTGATGT
AGTGTTTCCTCAAGATAGTTCTCGGTGCAAGCGGGTGATTCCTTGTGTCAGTAGAAATGG
TCCTGCACCTGCAGCTGGTGAACTGGGAACTTTATTTGTTCCCTTTTATCTTAGATCAGG
TGCAAGATTTTTACCACATAGCTGTGCACCATCGCAGGCCAGTTAGCTGCCCTTAGCACT
AGAAACCACCGTGTCGGGAACTTGAGGCAAAGTGAGTCTGAATTTGTGATCGATGAGCCC
ACCGGAGTGTTCCTTTGTTCACAGTGCTTGTGGGCATAATGAGCAAAGTGCCACGCACAT
TTGCGGAAGAAACATCCTTTTTGGTCCCTTTTGGGGATGAGAGGCACCTCTTGATGATGA
GTGACACGTACTCTCTTGCCTCATTGCTTAACTTAACGGCGTTCAATAAAGCAGACCAAG
CTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-366, gnl|bosTau2|chr7 (39347533-39347172)
               

               
               2-366, gnl|Hg17|chr5 (150071062-150070697)
               

               
               2-366, gnl|Mm7|chr18 (60945722-60946040)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-366, gnl|bosTau2|chr7 (39347533-39347172)
               

               
               2-366, gnl|Hg17|chr5 (150071062-150070697)
               

               
               2-366, gnl|Mm7|chr18 (60945722-60946040)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	2-366, gnl\|bosTau2\|chr7 (39347533-39347172)
	2-366, gnl\|Hg17\|chr5 (150071062-150070697)
	2-366, gnl\|Mm7\|chr18 (60945722-60946040)

	fce (0.271592)
	cov (0.264306)
	nms (0.213858)
	fhi (0.169578)
	cli (0.152812)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	med (0.116252)
	cty (0.10408)