Ss1.1-Pig4-TMW8058N16.3
|
CAGAACAAGCCTTTTTATGTTGTTGCAGAGAGTTTCAAGTTTGTACGGCTCTTCCCACTA
AATCAGCAAGACGTCCCAGATAAGTTTAAGTACAAGGCAGATACTCTGAAGTCTGTGCAG
GCCGGACAGGACCTCAAAGAGGAGCACCCATGGGTTGACTACACCGCCCCTTCGTTGATC
ACACTGCTGTTCACGGACCTGGGGGTGTTGACGCCCTCGGCAGTCAGCGACGAACTCATC
AAGCTCTATCTCTAACCTCCGGCCCTTTCCTGATGCTTTTGGAGATCCATCTGGAATGCA
GGGAATAGGAAGGGAGGGGCCGGGGCACGTCTTCCTCTTTCATCAGTCAAGTAGCCAATA
ATCTAACTTGTATGTCTGGAAACTGGAAATGAATGAAAGCTGATGAAGTTGGGAGCAGCC
TCTTGACCTCTCAGTGAGCCCAGGCCAAAACTGAATTGTTTTTTATGAAGTTTTATGGAC
TAAGGACTTAAGAGTATAAGCCTTAGAGAATTTTTTCTTCATTTAAGTCCCATCTAAGAT
ATGTTCTTGGAGTTCAGCTGTGGTGCAACAGGATCGGCAGCATCTTTATAGCAGTGGGAC
ACAGGTTGGATCTTGGATCCCCAGCCTGGCACAATGGGTTAAAGGATCCAGCTTTGTGGC
AGCTGCCTCATAGGTCCACAACTGCAGCCTATGGCCAGGGAATTCCATATGCCCTGAAAC
GGCCAAAAAAAGAAAAAAACAATGTTCATGTTTCCCCTAAAATGGAGCCTAAACTGTGCT
TACATTTTTCTGGACACTTTTTCATTTCTGGTTTTCAGAAATACAAGTTAGATTACTAAC
TAATGAAAGATGTGCCCATCCCCGCTCCCTTCATCTTCCAGACACTCCAGACTCATCTGC
CAAAAGCATCAGTGAAAGACCTGCAGCCCTGAGAGAGCAGGAGTCCTAACAGCAGCTGTC
AGCTGCCTGGGACACAGGCTGCACTTCGTGTGGTATGAGAAAGGCAGGTAACACTGCATC
TGCATGAGGCTCCTAGTGGTAGATACAAGCCGGGGCTGTCTTCTCTGCAAAAAGAACAAG
CCAAATGGAGTGGAAACTACTGTGAGAACCCACAGCAGGCAAAGCAGGCAAAGTACCATG
CATGGCTCAACCACTGACATATCTGCAAACTTAAACTCTATATCTGGGAAGGATATGAAT
TTAAACACAATTGGGTTCTGAACAGCTTTTTTAAAACTGTTCTTGGGAACAAATTCACGT
CTTTTCAAATAAATTGTATGAAAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGAACAAGCCTTTTTATGTTGTTGCAGAGAGTTTCAAGTTTGTACGGCTCTTCCCACTA
AATCAGCAAGACGTCCCAGATAAGTTTAAGTACAAGGCAGATACTCTGAAGTCTGTGCAG
GCCGGACAGGACCTCAAAGAGGAGCACCCATGGGTTGACTACACCGCCCCTTCGTTGATC
ACACTGCTGTTCACGGACCTGGGGGTGTTGACGCCCTCGGCAGTCAGCGACGAACTCATC
AAGCTCTATCTCTAACCTCCGGCCCTTTCCTGATGCTTTTGGAGATCCATCTGGAATGCA
GGGAATAGGAAGGGAGGGGCCGGGGCACGTCTTCCTCTTTCATCAGTCAAGTAGCCAATA
ATCTAACTTGTATGTCTGGAAACTGGAAATGAATGAAAGCTGATGAAGTTGGGAGCAGCC
TCTTGACCTCTCAGTGAGCCCAGGCCAAAACTGAATTGTTTTTTATGAAGTTTTATGGAC
TAAGGACTTAAGAGTATAAGCCTTAGAGAATTTTTTCTTCATTTAAGTCCCATCTAAGAT
ATGTTCTTGGAGTTCAGCTGTGGTGCAACAGGATCGGCAGCATCTTTATAGCAGTGGGAC
ACAGGTTGGATCTTGGATCCCCAGCCTGGCACAATGGGTTAAAGGATCCAGCTTTGTGGC
AGCTGCCTCATAGGTCCACAACTGCAGCCTATGGCCAGGGAATTCCATATGCCCTGAAAC
GGCCAAAAAAAGAAAAAAACAATGTTCATGTTTCCCCTAAAATGGAGCCTAAACTGTGCT
TACATTTTTCTGGACACTTTTTCATTTCTGGTTTTCAGAAATACAAGTTAGATTACTAAC
TAATGAAAGATGTGCCCATCCCCGCTCCCTTCATCTTCCAGACACTCCAGACTCATCTGC
CAAAAGCATCAGTGAAAGACCTGCAGCCCTGAGAGAGCAGGAGTCCTAACAGCAGCTGTC
AGCTGCCTGGGACACAGGCTGCACTTCGTGTGGTATGAGAAAGGCAGGTAACACTGCATC
TGCATGAGGCTCCTAGTGGTAGATACAAGCCGGGGCTGTCTTCTCTGCAAAAAGAACAAG
CCAAATGGAGTGGAAACTACTGTGAGAACCCACAGCAGGCAAAGCAGGCAAAGTACCATG
CATGGCTCAACCACTGACATATCTGCAAACTTAAACTCTATATCTGGGAAGGATATGAAT
TTAAACACAATTGGGTTCTGAACAGCTTTTTTAAAACTGTTCTTGGGAACAAATTCACGT
CTTTTCAAATAAATTGTATGAAAG
|
|
gi|55639181|ref|XP_509467.1| |
Protein identifier
|
gi|55639181|ref|XP_509467.1| |
|
89-275, gnl|bosTau2|chr17 (26590966-26590779) |
|
89-275, gnl|Hg17|chr12 (122631349-122631164) |
|
89-275, gnl|Mm7|chr5 (123817219-123817037) |
| |
|
938-1112, gnl|bosTau2|chr17 (26590634-26590462) |
|
938-1112, gnl|Hg17|chr12 (122630801-122630648) |
| |
|
1159-1284, gnl|bosTau2|chr17 (26590389-26590262) |
|
1159-1284, gnl|canFam2|chr26 (9039471-9039276) |
|
1159-1284, gnl|dasNov1|scaffold_23632 (11425-11546) |
|
1159-1284, gnl|echTel1|scaffold_199485 (13275-13370) |
|
1159-1284, gnl|hg17|chr12 (122630420-122630542) |
|
1159-1284, gnl|Hg17|chr12 (122630578-122630457) |
|
1159-1284, gnl|loxAfr1|scaffold_1248 (10980-11100) |
|
1159-1284, gnl|mm7|chr5 (123816490-123816593) |
|
1159-1284, gnl|oryCun1|scaffold_214808 (77246-77139) |
|
1159-1284, gnl|panTro1|chr10 (125682397-125682519) |
|
1159-1284, gnl|rheMac2|chr11 (124903712-124903836) |
|
1159-1284, gnl|rn3|chr12 (33010105-33009964) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
89-275, gnl|bosTau2|chr17 (26590966-26590779) |
|
89-275, gnl|Hg17|chr12 (122631349-122631164) |
|
89-275, gnl|Mm7|chr5 (123817219-123817037) |
| |
|
938-1112, gnl|bosTau2|chr17 (26590634-26590462) |
|
938-1112, gnl|Hg17|chr12 (122630801-122630648) |
| |
|
1159-1284, gnl|bosTau2|chr17 (26590389-26590262) |
|
1159-1284, gnl|canFam2|chr26 (9039471-9039276) |
|
1159-1284, gnl|dasNov1|scaffold_23632 (11425-11546) |
|
1159-1284, gnl|echTel1|scaffold_199485 (13275-13370) |
|
1159-1284, gnl|hg17|chr12 (122630420-122630542) |
|
1159-1284, gnl|Hg17|chr12 (122630578-122630457) |
|
1159-1284, gnl|loxAfr1|scaffold_1248 (10980-11100) |
|
1159-1284, gnl|mm7|chr5 (123816490-123816593) |
|
1159-1284, gnl|oryCun1|scaffold_214808 (77246-77139) |
|
1159-1284, gnl|panTro1|chr10 (125682397-125682519) |
|
1159-1284, gnl|rheMac2|chr11 (124903712-124903836) |
|
1159-1284, gnl|rn3|chr12 (33010105-33009964) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ste (0.135208) |
|
pla (0.133672) |
|
bla (0.124347) |
|
eep (0.122564) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
sto (0.179824) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cut (0.169924) |
|
cje (0.165235) |
|
tbr (0.154178) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
ste (0.135208) |
|
pla (0.133672) |
|
bla (0.124347) |
|
eep (0.122564) |
|
cty (0.10408) |
|
jej (0.0989218) |
