Ss1.1-Pig4-TMW8058N20.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCTGCTGGCCAAGAACAGGCAAACATTCCTGCTCCAGACCACGAAGCTGACCCGTCT TGCCAGACGCATGTGCAGGGACCTGTTACAGCCGAGGAGGGCTGCCCGACGACCCTATGC CCCTATCAATGCCAATGCCATCAAGGCAGAGTGCTCCATTCGACTTCCTAAGGCCGCCAA GACTCCACTGAAGATTCACCCTCTGGTGCGACTTCCCCTGGCAACTATTGTGAAAGATTT GGTGGCCCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAATAG GAACCAGCTGACCCAGAATCGGGGGCTGGGGAGCATTATGGTGAAACGGGCCTATGAGAC TATGGCAGGAGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGCTCAAG CTCACAGCCAGCAACCAAGCGTCAGAAACTAAACCCAGCTGACGCCCCCAATCCTGTGGT GTTTGTGGCCACAAAAGACACCAGAGCCCTGCGGAAGGCTCTGACCCACCTGGAGATGCG GCGAGCTGCCCGCCGGCCCAACTTGCCTCTGAAGGTGAAGCCACCGCTGATTACAGTGCG GGCTCCAGTCTCTCTTCCTCCATCCGCACATCCTGCCAGCACCAATGAGCCCATTGTCCT GGAAGACTGAGCATCTGTGGGGCAGGGAGGAGGGCTGAAAGCTAGAGGGTGGGTGCACCG GGCACCTAGCCTCCCTTCCCTCTAGTGTCAAAGGGAATGAGGAGTGCGGGAGGGAGGGAG CAAGTGAGTGTGTCCTTGGAGGGGATGGGCGCCCTCTGGTGTTACTACTTGGAGGCTTGT CCCCTTCCGGTGCTTCTCCATGCCTGGTGATGGAGGGCAAACTGCAGGAACTTGGCCCAT TGTGGGAACCTAGCCTGTTTTGGGGGTAGGGCCCACAGTTGTCTTGGATAGTTTTTGGGG GGAGGGTTTTTTAATTTTTTAAAAATTTTGCCTCCCTTTGTGAAAGGGGATGGGAGAGGG GAAGAGTAAGCAGATATCAGGTGGTATCTGGTTGGGGGAGGGGGGCGTGCACTGCCATTA CTGCCATGTCTATCTTTTTTTTCTCCTTTTTTCTAACTGGGGGTTCCTCTTCCTGTCCGG TGTCCGGACTTTCCCAATCGGAGTTTGAGGCCCCTAAGCTGGTATCAACCCCAGCCTATG CTCGCTCTTTCCTTCCCTCTCCTTGCCCCCTCTGCCTTTTGTACGCCAATTCTCAGAAAT AAAGATCTTTTGTCCGTTTTTTTAACCTCGGATTCTGTAATTGGTTCTTATAGTAACAAA TAAAAAGCTGTTTTCTTCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCTGCTGGCCAAGAACAGGCAAACATTCCTGCTCCAGACCACGAAGCTGACCCGTCT TGCCAGACGCATGTGCAGGGACCTGTTACAGCCGAGGAGGGCTGCCCGACGACCCTATGC CCCTATCAATGCCAATGCCATCAAGGCAGAGTGCTCCATTCGACTTCCTAAGGCCGCCAA GACTCCACTGAAGATTCACCCTCTGGTGCGACTTCCCCTGGCAACTATTGTGAAAGATTT GGTGGCCCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAATAG GAACCAGCTGACCCAGAATCGGGGGCTGGGGAGCATTATGGTGAAACGGGCCTATGAGAC TATGGCAGGAGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGCTCAAG CTCACAGCCAGCAACCAAGCGTCAGAAACTAAACCCAGCTGACGCCCCCAATCCTGTGGT GTTTGTGGCCACAAAAGACACCAGAGCCCTGCGGAAGGCTCTGACCCACCTGGAGATGCG GCGAGCTGCCCGCCGGCCCAACTTGCCTCTGAAGGTGAAGCCACCGCTGATTACAGTGCG GGCTCCAGTCTCTCTTCCTCCATCCGCACATCCTGCCAGCACCAATGAGCCCATTGTCCT GGAAGACTGAGCATCTGTGGGGCAGGGAGGAGGGCTGAAAGCTAGAGGGTGGGTGCACCG GGCACCTAGCCTCCCTTCCCTCTAGTGTCAAAGGGAATGAGGAGTGCGGGAGGGAGGGAG CAAGTGAGTGTGTCCTTGGAGGGGATGGGCGCCCTCTGGTGTTACTACTTGGAGGCTTGT CCCCTTCCGGTGCTTCTCCATGCCTGGTGATGGAGGGCAAACTGCAGGAACTTGGCCCAT TGTGGGAACCTAGCCTGTTTTGGGGGTAGGGCCCACAGTTGTCTTGGATAGTTTTTGGGG GGAGGGTTTTTTAATTTTTTAAAAATTTTGCCTCCCTTTGTGAAAGGGGATGGGAGAGGG GAAGAGTAAGCAGATATCAGGTGGTATCTGGTTGGGGGAGGGGGGCGTGCACTGCCATTA CTGCCATGTCTATCTTTTTTTTCTCCTTTTTTCTAACTGGGGGTTCCTCTTCCTGTCCGG TGTCCGGACTTTCCCAATCGGAGTTTGAGGCCCCTAAGCTGGTATCAACCCCAGCCTATG CTCGCTCTTTCCTTCCCTCTCCTTGCCCCCTCTGCCTTTTGTACGCCAATTCTCAGAAAT AAAGATCTTTTGTCCGTTTTTTTAACCTCGGATTCTGTAATTGGTTCTTATAGTAACAAA TAAAAAGCTGTTTTCTTCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 660-814, - strand, RNAz p=0.999812 | |
| 894-1209, + strand, RNAz p=0.997978 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 660-814, - strand, RNAz p=0.999812 | |
| 894-1209, + strand, RNAz p=0.997978 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC053650, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-153, gnl|bosTau2|chr29 (32046143-32045991) | |
| 1-153, gnl|canFam2|chr18 (57070774-57070600) | |
| 1-153, gnl|danRer3|chrNA (82423966-82423795) | |
| 1-153, gnl|dasNov1|scaffold_3087 (117035-116861) | |
| 1-153, gnl|echTel1|scaffold_309915 (57845-57675) | |
| 1-153, gnl|fr1|chrUn (106938517-106938344) | |
| 1-153, gnl|hg17|chr11 (62119304-62119478) | |
| 1-153, gnl|Hg17|chr11 (62119463-62119311) | |
| 1-153, gnl|loxAfr1|scaffold_40425 (40166-40023) | |
| 1-153, gnl|mm7|chr19 (8629351-8629177) | |
| 1-153, gnl|Mm7|chr19 (8629190-8629342) | |
| 1-153, gnl|monDom2|scaffold_150 (855901-856075) | |
| 1-153, gnl|oryCun1|scaffold_162254 (5238-5064) | |
| 1-153, gnl|panTro1|chr9 (63114871-63115045) | |
| 1-153, gnl|rheMac2|chr14 (11497991-11497817) | |
| 1-153, gnl|rn3|chr1 (211783383-211783209) | |
| 1-153, gnl|tetNig1|chrUn_random (23924067-23924241) | |
| 1-153, gnl|xenTro1|scaffold_1376 (40654-40480) | |
| 242-364, gnl|bosTau2|chr29 (32045242-32045120) | |
| 242-364, gnl|Hg17|chr11 (62118683-62118561) | |
| 242-364, gnl|Mm7|chr19 (8631073-8631195) | |
| 501-1339, gnl|bosTau2|chr29 (32044662-32043825) | |
| 501-1339, gnl|Hg17|chr11 (62118092-62117262) | |
| 501-1339, gnl|Mm7|chr19 (8631648-8632457) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-153, gnl|bosTau2|chr29 (32046143-32045991) | |
| 1-153, gnl|canFam2|chr18 (57070774-57070600) | |
| 1-153, gnl|danRer3|chrNA (82423966-82423795) | |
| 1-153, gnl|dasNov1|scaffold_3087 (117035-116861) | |
| 1-153, gnl|echTel1|scaffold_309915 (57845-57675) | |
| 1-153, gnl|fr1|chrUn (106938517-106938344) | |
| 1-153, gnl|hg17|chr11 (62119304-62119478) | |
| 1-153, gnl|Hg17|chr11 (62119463-62119311) | |
| 1-153, gnl|loxAfr1|scaffold_40425 (40166-40023) | |
| 1-153, gnl|mm7|chr19 (8629351-8629177) | |
| 1-153, gnl|Mm7|chr19 (8629190-8629342) | |
| 1-153, gnl|monDom2|scaffold_150 (855901-856075) | |
| 1-153, gnl|oryCun1|scaffold_162254 (5238-5064) | |
| 1-153, gnl|panTro1|chr9 (63114871-63115045) | |
| 1-153, gnl|rheMac2|chr14 (11497991-11497817) | |
| 1-153, gnl|rn3|chr1 (211783383-211783209) | |
| 1-153, gnl|tetNig1|chrUn_random (23924067-23924241) | |
| 1-153, gnl|xenTro1|scaffold_1376 (40654-40480) | |
| 242-364, gnl|bosTau2|chr29 (32045242-32045120) | |
| 242-364, gnl|Hg17|chr11 (62118683-62118561) | |
| 242-364, gnl|Mm7|chr19 (8631073-8631195) | |
| 501-1339, gnl|bosTau2|chr29 (32044662-32043825) | |
| 501-1339, gnl|Hg17|chr11 (62118092-62117262) | |
| 501-1339, gnl|Mm7|chr19 (8631648-8632457) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| elu (0.385356) | |
| fty (0.351679) | |
| fce (0.271592) | |
| cly (0.241284) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ill (0.175593) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| elu (0.385356) | |
| fty (0.351679) | |
| fce (0.271592) | |
| cly (0.241284) | |
| med (0.232504) | |
| ecc (0.23007) | |
| ill (0.175593) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) |