Ss1.1-Pig4-TMW8058O03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCTCCTCCCACCCGTGGGCGCCGGGCGCTCGCCCCGAAAGCGCACCACCAGCCAGTG CAAGTCCGAGCCGCCCCTGCTGCGAACCAGCAAGCGCACCATCTACACCGCAGGGCGGCC ACCCTGGTACAACGAACACGGCACCCAGTCCAAGGAGGCCTTTGCCATCGGCCTGGGGGG CGGCAGTGCCTCTGGGAAGACCACTGTGGCCAGAATGATCATTGAGGCCCTGGATGTGCC CTGGGTGGTCCTGCTGTCCATGGATTCCTTCTACAAGGTGCTCACCAGGCAGCAGCAGGA GCAGGCTGCCCACAACAATTTCAACTTCGACCACCCCGATGCCTTTGACTTCGACCTCAT CATCTCCACCCTCAAGAAGCTGAAGCAGGGCAAGAGCGTCAAGGTGCCCATCTATGACTT CACCACCCACAGCCGGAAGAAGGACTGGAAAACGCTCTACGGTGCGAACGTCATCATTTT CGAGGGCATCATGGCCTTTGCTGACAAGACCCTGCTGGAGCTCCTGGACATGAAGATCTT TGTGGACACGGACTCCGACATCCGCCTGGTGCGGCGGCTGCGCCGCGACATCAGCGAGCG GGGCCGGGACATCGAGGGCGTCATCAAGCAGTACAACAAGTTCGTGAAGCCCGCCTTCGA CCAGTACATCCAGCCCACCATGCGCCTGGCGGACATCGTGGTGCCCCGGGGGAGCGGAAA CACCGTGGCCATCGACCTGATCGTGCAGCACGTACACAGCCAGCTGGAGGAGCGCGAGCT GAGTGTCAGGGCTGCGCTGGCCTCCGCGCACCAGTGCCACCCCCTGCCCCAGACGCTGAG TGTCCTCAAGAGCACACCGCAGGTGCGCGGCATGCATACCATCATCAGGGACCGGGAGAC CAGCCGCGACGAGTTCATCTTCTACTCCAAGAGGCTGATGCGGCTGCTCATCGAGCATGC GCTGTCCTTCCTGCCCTTCCAGGACTGCGTGGTGCAGACCCCGCAGGGGCAGGACTACGC GGGCAAGTGCTACGCCGGGAAGCAGATCACGGGCGTGTCCATCCTGCGGGCGGGCGAGAC CATGGAGCCTGCACTGCGGGCCGTGTGCAAGGACGTGCGCATCGGCACCATCCTCATCCA GACCAACCAGCTCACCGGGGAGCCCGAGCTCCACTACCTGCGGCTCCCCAAGGACATCAG CGATGACCACGTGATCCTGATGGACTGCACGGTGTCCACTGGCGCCGCAGCCATGATGGC CGTGCGGGTGCTGCTGGACCACGACGTGCCAGAGGACAAGATCTTCCTGCTGTCGCTGCT CATGGCCGAGATGGGCGTCCACTCGGTGGCCTACGCGTTCCCCCGCGTGCGGATCATCAC CACGGCAGTGGACAAGCGCGTCAACGACCTCTTCCGCATCATCCCCGGCATCGGGAACTT TGGCGACCGCTACTTCGGGACTGACGCTGTCCCCGACGGCAGCGACGAGGAGGAGGGGGG CTCTGCCAGCTAGCCTCGCACCCAGAGCCTTCTCAGCCCGCCCCCAGCCCTGTCTCCCAG CCCCACACAGAACAGACACTTTGATTTATTTTAATTAAAAAAAGTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCTCCTCCCACCCGTGGGCGCCGGGCGCTCGCCCCGAAAGCGCACCACCAGCCAGTG CAAGTCCGAGCCGCCCCTGCTGCGAACCAGCAAGCGCACCATCTACACCGCAGGGCGGCC ACCCTGGTACAACGAACACGGCACCCAGTCCAAGGAGGCCTTTGCCATCGGCCTGGGGGG CGGCAGTGCCTCTGGGAAGACCACTGTGGCCAGAATGATCATTGAGGCCCTGGATGTGCC CTGGGTGGTCCTGCTGTCCATGGATTCCTTCTACAAGGTGCTCACCAGGCAGCAGCAGGA GCAGGCTGCCCACAACAATTTCAACTTCGACCACCCCGATGCCTTTGACTTCGACCTCAT CATCTCCACCCTCAAGAAGCTGAAGCAGGGCAAGAGCGTCAAGGTGCCCATCTATGACTT CACCACCCACAGCCGGAAGAAGGACTGGAAAACGCTCTACGGTGCGAACGTCATCATTTT CGAGGGCATCATGGCCTTTGCTGACAAGACCCTGCTGGAGCTCCTGGACATGAAGATCTT TGTGGACACGGACTCCGACATCCGCCTGGTGCGGCGGCTGCGCCGCGACATCAGCGAGCG GGGCCGGGACATCGAGGGCGTCATCAAGCAGTACAACAAGTTCGTGAAGCCCGCCTTCGA CCAGTACATCCAGCCCACCATGCGCCTGGCGGACATCGTGGTGCCCCGGGGGAGCGGAAA CACCGTGGCCATCGACCTGATCGTGCAGCACGTACACAGCCAGCTGGAGGAGCGCGAGCT GAGTGTCAGGGCTGCGCTGGCCTCCGCGCACCAGTGCCACCCCCTGCCCCAGACGCTGAG TGTCCTCAAGAGCACACCGCAGGTGCGCGGCATGCATACCATCATCAGGGACCGGGAGAC CAGCCGCGACGAGTTCATCTTCTACTCCAAGAGGCTGATGCGGCTGCTCATCGAGCATGC GCTGTCCTTCCTGCCCTTCCAGGACTGCGTGGTGCAGACCCCGCAGGGGCAGGACTACGC GGGCAAGTGCTACGCCGGGAAGCAGATCACGGGCGTGTCCATCCTGCGGGCGGGCGAGAC CATGGAGCCTGCACTGCGGGCCGTGTGCAAGGACGTGCGCATCGGCACCATCCTCATCCA GACCAACCAGCTCACCGGGGAGCCCGAGCTCCACTACCTGCGGCTCCCCAAGGACATCAG CGATGACCACGTGATCCTGATGGACTGCACGGTGTCCACTGGCGCCGCAGCCATGATGGC CGTGCGGGTGCTGCTGGACCACGACGTGCCAGAGGACAAGATCTTCCTGCTGTCGCTGCT CATGGCCGAGATGGGCGTCCACTCGGTGGCCTACGCGTTCCCCCGCGTGCGGATCATCAC CACGGCAGTGGACAAGCGCGTCAACGACCTCTTCCGCATCATCCCCGGCATCGGGAACTT TGGCGACCGCTACTTCGGGACTGACGCTGTCCCCGACGGCAGCGACGAGGAGGAGGGGGG CTCTGCCAGCTAGCCTCGCACCCAGAGCCTTCTCAGCCCGCCCCCAGCCCTGTCTCCCAG CCCCACACAGAACAGACACTTTGATTTATTTTAATTAAAAAAAGTTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr13 (35184607-35184777) | |
| 1-171, gnl|canFam2|chr24 (50466392-50466635) | |
| 1-171, gnl|danRer3|chr8 (15152186-15151987) | |
| 1-171, gnl|echTel1|scaffold_295768 (12312-12087) | |
| 1-171, gnl|fr1|chrUn (58271748-58271526) | |
| 1-171, gnl|galGal2|chr20 (9172491-9172267) | |
| 1-171, gnl|hg17|chr20 (62048232-62048454) | |
| 1-171, gnl|Hg17|chr20 (62048419-62048249) | |
| 1-171, gnl|loxAfr1|scaffold_43599 (6226-6446) | |
| 1-171, gnl|mm7|chr2 (182075742-182075963) | |
| 1-171, gnl|Mm7|chr2 (182075928-182075758) | |
| 1-171, gnl|monDom2|scaffold_1 (184782615-184782823) | |
| 1-171, gnl|panTro1|chr21 (65122677-65122899) | |
| 1-171, gnl|rheMac2|chr10 (398801-398580) | |
| 1-171, gnl|rn3|chr3 (170619438-170619659) | |
| 1-171, gnl|tetNig1|chr9 (5783997-5783775) | |
| 276-448, gnl|bosTau2|chr13 (35185226-35185398) | |
| 276-448, gnl|Hg17|chr20 (62047774-62047602) | |
| 276-448, gnl|Mm7|chr2 (182075453-182075281) | |
| 519-711, gnl|bosTau2|chr13 (35186190-35186382) | |
| 519-711, gnl|canFam2|chr24 (50464171-50464411) | |
| 519-711, gnl|danRer3|chr8 (15155797-15155573) | |
| 519-711, gnl|dasNov1|scaffold_261303 (1612-1390) | |
| 519-711, gnl|echTel1|scaffold_295768 (13470-13242) | |
| 519-711, gnl|fr1|chrUn (58273905-58273678) | |
| 519-711, gnl|galGal2|chr20 (9174595-9174370) | |
| 519-711, gnl|hg17|chr20 (62046317-62046553) | |
| 519-711, gnl|Hg17|chr20 (62046533-62046341) | |
| 519-711, gnl|loxAfr1|scaffold_43599 (4709-4936) | |
| 519-711, gnl|mm7|chr2 (182074096-182074322) | |
| 519-711, gnl|Mm7|chr2 (182074318-182074126) | |
| 519-711, gnl|monDom2|scaffold_1 (184777961-184778184) | |
| 519-711, gnl|oryCun1|scaffold_110226 (708-484) | |
| 519-711, gnl|panTro1|chr21 (65120729-65120965) | |
| 519-711, gnl|rheMac2|chr10 (400674-400438) | |
| 519-711, gnl|rn3|chr3 (170617808-170618034) | |
| 519-711, gnl|tetNig1|chr9 (5786093-5785886) | |
| 519-711, gnl|xenTro1|scaffold_22589 (2647-2874) | |
| 786-889, gnl|bosTau2|chr13 (35188782-35188885) | |
| 786-889, gnl|canFam2|chr24 (50460929-50461041) | |
| 786-889, gnl|danRer3|chr8 (15158674-15158571) | |
| 786-889, gnl|dasNov1|scaffold_229389 (3612-3727) | |
| 786-889, gnl|echTel1|scaffold_295768 (15382-15268) | |
| 786-889, gnl|fr1|chrUn (58276348-58276245) | |
| 786-889, gnl|galGal2|chr20 (9181265-9181155) | |
| 786-889, gnl|hg17|chr20 (62042906-62043016) | |
| 786-889, gnl|Hg17|chr20 (62043009-62042906) | |
| 786-889, gnl|loxAfr1|scaffold_43599 (1941-2056) | |
| 786-889, gnl|mm7|chr2 (182071411-182071523) | |
| 786-889, gnl|Mm7|chr2 (182071514-182071411) | |
| 786-889, gnl|monDom2|scaffold_1 (184768358-184768480) | |
| 786-889, gnl|panTro1|chr21 (65117325-65117435) | |
| 786-889, gnl|rheMac2|chr10 (403814-403704) | |
| 786-889, gnl|rn3|chr3 (170615181-170615293) | |
| 786-889, gnl|tetNig1|chr9 (5788520-5788417) | |
| 1043-1168, gnl|bosTau2|chr13 (35189286-35189411) | |
| 1043-1168, gnl|Hg17|chr20 (62042519-62042391) | |
| 1043-1168, gnl|Mm7|chr2 (182070946-182070821) | |
| 1276-1434, gnl|bosTau2|chr13 (35189740-35189898) | |
| 1276-1434, gnl|canFam2|chr24 (50459841-50460011) | |
| 1276-1434, gnl|danRer3|chr8 (15163231-15163068) | |
| 1276-1434, gnl|fr1|chrUn (58277503-58277331) | |
| 1276-1434, gnl|hg17|chr20 (62041943-62042114) | |
| 1276-1434, gnl|Hg17|chr20 (62042104-62041946) | |
| 1276-1434, gnl|loxAfr1|scaffold_43599 (299-470) | |
| 1276-1434, gnl|mm7|chr2 (182070376-182070547) | |
| 1276-1434, gnl|Mm7|chr2 (182070537-182070379) | |
| 1276-1434, gnl|monDom2|scaffold_1 (184765270-184765433) | |
| 1276-1434, gnl|oryCun1|scaffold_110226 (4263-4092) | |
| 1276-1434, gnl|panTro1|chr21 (65116362-65116533) | |
| 1276-1434, gnl|rheMac2|chr10 (404754-404583) | |
| 1276-1434, gnl|rn3|chr3 (170614139-170614310) | |
| 1276-1434, gnl|tetNig1|chr9 (5789601-5789438) | |
| 1276-1434, gnl|xenTro1|scaffold_17362 (5136-4965) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr13 (35184607-35184777) | |
| 1-171, gnl|canFam2|chr24 (50466392-50466635) | |
| 1-171, gnl|danRer3|chr8 (15152186-15151987) | |
| 1-171, gnl|echTel1|scaffold_295768 (12312-12087) | |
| 1-171, gnl|fr1|chrUn (58271748-58271526) | |
| 1-171, gnl|galGal2|chr20 (9172491-9172267) | |
| 1-171, gnl|hg17|chr20 (62048232-62048454) | |
| 1-171, gnl|Hg17|chr20 (62048419-62048249) | |
| 1-171, gnl|loxAfr1|scaffold_43599 (6226-6446) | |
| 1-171, gnl|mm7|chr2 (182075742-182075963) | |
| 1-171, gnl|Mm7|chr2 (182075928-182075758) | |
| 1-171, gnl|monDom2|scaffold_1 (184782615-184782823) | |
| 1-171, gnl|panTro1|chr21 (65122677-65122899) | |
| 1-171, gnl|rheMac2|chr10 (398801-398580) | |
| 1-171, gnl|rn3|chr3 (170619438-170619659) | |
| 1-171, gnl|tetNig1|chr9 (5783997-5783775) | |
| 276-448, gnl|bosTau2|chr13 (35185226-35185398) | |
| 276-448, gnl|Hg17|chr20 (62047774-62047602) | |
| 276-448, gnl|Mm7|chr2 (182075453-182075281) | |
| 519-711, gnl|bosTau2|chr13 (35186190-35186382) | |
| 519-711, gnl|canFam2|chr24 (50464171-50464411) | |
| 519-711, gnl|danRer3|chr8 (15155797-15155573) | |
| 519-711, gnl|dasNov1|scaffold_261303 (1612-1390) | |
| 519-711, gnl|echTel1|scaffold_295768 (13470-13242) | |
| 519-711, gnl|fr1|chrUn (58273905-58273678) | |
| 519-711, gnl|galGal2|chr20 (9174595-9174370) | |
| 519-711, gnl|hg17|chr20 (62046317-62046553) | |
| 519-711, gnl|Hg17|chr20 (62046533-62046341) | |
| 519-711, gnl|loxAfr1|scaffold_43599 (4709-4936) | |
| 519-711, gnl|mm7|chr2 (182074096-182074322) | |
| 519-711, gnl|Mm7|chr2 (182074318-182074126) | |
| 519-711, gnl|monDom2|scaffold_1 (184777961-184778184) | |
| 519-711, gnl|oryCun1|scaffold_110226 (708-484) | |
| 519-711, gnl|panTro1|chr21 (65120729-65120965) | |
| 519-711, gnl|rheMac2|chr10 (400674-400438) | |
| 519-711, gnl|rn3|chr3 (170617808-170618034) | |
| 519-711, gnl|tetNig1|chr9 (5786093-5785886) | |
| 519-711, gnl|xenTro1|scaffold_22589 (2647-2874) | |
| 786-889, gnl|bosTau2|chr13 (35188782-35188885) | |
| 786-889, gnl|canFam2|chr24 (50460929-50461041) | |
| 786-889, gnl|danRer3|chr8 (15158674-15158571) | |
| 786-889, gnl|dasNov1|scaffold_229389 (3612-3727) | |
| 786-889, gnl|echTel1|scaffold_295768 (15382-15268) | |
| 786-889, gnl|fr1|chrUn (58276348-58276245) | |
| 786-889, gnl|galGal2|chr20 (9181265-9181155) | |
| 786-889, gnl|hg17|chr20 (62042906-62043016) | |
| 786-889, gnl|Hg17|chr20 (62043009-62042906) | |
| 786-889, gnl|loxAfr1|scaffold_43599 (1941-2056) | |
| 786-889, gnl|mm7|chr2 (182071411-182071523) | |
| 786-889, gnl|Mm7|chr2 (182071514-182071411) | |
| 786-889, gnl|monDom2|scaffold_1 (184768358-184768480) | |
| 786-889, gnl|panTro1|chr21 (65117325-65117435) | |
| 786-889, gnl|rheMac2|chr10 (403814-403704) | |
| 786-889, gnl|rn3|chr3 (170615181-170615293) | |
| 786-889, gnl|tetNig1|chr9 (5788520-5788417) | |
| 1043-1168, gnl|bosTau2|chr13 (35189286-35189411) | |
| 1043-1168, gnl|Hg17|chr20 (62042519-62042391) | |
| 1043-1168, gnl|Mm7|chr2 (182070946-182070821) | |
| 1276-1434, gnl|bosTau2|chr13 (35189740-35189898) | |
| 1276-1434, gnl|canFam2|chr24 (50459841-50460011) | |
| 1276-1434, gnl|danRer3|chr8 (15163231-15163068) | |
| 1276-1434, gnl|fr1|chrUn (58277503-58277331) | |
| 1276-1434, gnl|hg17|chr20 (62041943-62042114) | |
| 1276-1434, gnl|Hg17|chr20 (62042104-62041946) | |
| 1276-1434, gnl|loxAfr1|scaffold_43599 (299-470) | |
| 1276-1434, gnl|mm7|chr2 (182070376-182070547) | |
| 1276-1434, gnl|Mm7|chr2 (182070537-182070379) | |
| 1276-1434, gnl|monDom2|scaffold_1 (184765270-184765433) | |
| 1276-1434, gnl|oryCun1|scaffold_110226 (4263-4092) | |
| 1276-1434, gnl|panTro1|chr21 (65116362-65116533) | |
| 1276-1434, gnl|rheMac2|chr10 (404754-404583) | |
| 1276-1434, gnl|rn3|chr3 (170614139-170614310) | |
| 1276-1434, gnl|tetNig1|chr9 (5789601-5789438) | |
| 1276-1434, gnl|xenTro1|scaffold_17362 (5136-4965) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| col (0.390016) | |
| csp (0.322373) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nms (0.213858) | |
| mas (0.210305) | |
| eye (0.170503) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| csp (0.322373) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nms (0.213858) | |
| mas (0.210305) | |
| eye (0.170503) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |