Non-Coding RNA Search

Ss1.1-Pig4-TMW8058O05.3

Sequence:


               
               CTTGATTCAATCCAGGAATTTCCATATGCCGCAGGCACAGCCATAAAACAAGAGAGAAAA
GAAAAGTAATTCCATATTAAAAATTTCACTAACATCCCTTTCTGAGACTATTGTCTCATA
CATGAATTTGGCTCGATCAAGCTGAATTGTTGCCATTTAGCCATGTTCAAGAGCAAGGTA
AGTCTGGAGAAAGCAATCCAGCAACCTGTGACTCTGGTGTACCCATTTCCCTTAATAATG
GGAAGTGGTTTGAAATTCCTAGAAGAAGGCTGCTTTGTGATCCAAGTGATGGATTATAAG
AAAGACAGACTTTGGGTAAGGATCATTGGAAGAGAGGAGGTGCTTAAATATTTCCTAAAC
TATATGCCATTTAGCTTCTATTTCTGAAATGTCTGCTTTGGTGCCATATATTGAGATCTA
TCAGTTGACTGAAAGATAACCATGCTTTCTTGGTAAATAAGCAATTGGTAACCCAAAGGC
ATTCTTTCCTTATCATTTTATATCATGCACTGATGCTGACATTACAAAAAAAGATCTGGA
AGGGAAACAGCCACAGTCTTTTCTTTAAAATACAGAGTATCCCAATCACTCATTTATTTT
GGTCACTTTGTTTTAAATGTTTCCCTTCATGAGAAATGCTGTCAATATCTCATGTGATTT
CTAAGAGCTCTGAACCAAATTGTTACTTGTTATGTCCTGCTAAGTACTTTTTTCTTTAAA
ATACCCTGTTTTACCACCCTGTGGCACTGATGTGTTGCTGTGCTACACAGATGACCCTGA
GTTAGGGTTCCTGAAATAGCTCAGTTCTTGTGTTTTTATATTATGTAACAGTTTTGTGAT
GCTTTTGTGCATTCTTTGTCTTCTCTTCCAAGTTTTGAAATCTGTCATAAATAAACTTTT
TCACTATGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGATTCAATCCAGGAATTTCCATATGCCGCAGGCACAGCCATAAAACAAGAGAGAAAA
GAAAAGTAATTCCATATTAAAAATTTCACTAACATCCCTTTCTGAGACTATTGTCTCATA
CATGAATTTGGCTCGATCAAGCTGAATTGTTGCCATTTAGCCATGTTCAAGAGCAAGGTA
AGTCTGGAGAAAGCAATCCAGCAACCTGTGACTCTGGTGTACCCATTTCCCTTAATAATG
GGAAGTGGTTTGAAATTCCTAGAAGAAGGCTGCTTTGTGATCCAAGTGATGGATTATAAG
AAAGACAGACTTTGGGTAAGGATCATTGGAAGAGAGGAGGTGCTTAAATATTTCCTAAAC
TATATGCCATTTAGCTTCTATTTCTGAAATGTCTGCTTTGGTGCCATATATTGAGATCTA
TCAGTTGACTGAAAGATAACCATGCTTTCTTGGTAAATAAGCAATTGGTAACCCAAAGGC
ATTCTTTCCTTATCATTTTATATCATGCACTGATGCTGACATTACAAAAAAAGATCTGGA
AGGGAAACAGCCACAGTCTTTTCTTTAAAATACAGAGTATCCCAATCACTCATTTATTTT
GGTCACTTTGTTTTAAATGTTTCCCTTCATGAGAAATGCTGTCAATATCTCATGTGATTT
CTAAGAGCTCTGAACCAAATTGTTACTTGTTATGTCCTGCTAAGTACTTTTTTCTTTAAA
ATACCCTGTTTTACCACCCTGTGGCACTGATGTGTTGCTGTGCTACACAGATGACCCTGA
GTTAGGGTTCCTGAAATAGCTCAGTTCTTGTGTTTTTATATTATGTAACAGTTTTGTGAT
GCTTTTGTGCATTCTTTGTCTTCTCTTCCAAGTTTTGAAATCTGTCATAAATAAACTTTT
TCACTATGCACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               716-865, + strand, RNAz p=0.930497

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               716-865, + strand, RNAz p=0.930497

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-912, gnl|bosTau2|chr10 (62073452-62074305)
               

               
               76-912, gnl|Hg17|chr14 (76871978-76871123)
               

               
               76-912, gnl|Mm7|chr12 (85169710-85168816)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-912, gnl|bosTau2|chr10 (62073452-62074305)
               

               
               76-912, gnl|Hg17|chr14 (76871978-76871123)
               

               
               76-912, gnl|Mm7|chr12 (85169710-85168816)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               fbs (0.350693)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	76-912, gnl\|bosTau2\|chr10 (62073452-62074305)
	76-912, gnl\|Hg17\|chr14 (76871978-76871123)
	76-912, gnl\|Mm7\|chr12 (85169710-85168816)

	fbs (0.350693)
	lun (0.300978)
	liv (0.292569)
	pty (0.142714)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)
	eje (0.0988338)