Non-Coding RNA Search

Ss1.1-Pig4-TMW8058O07.3

Sequence:


               
               TGTAATACACTCTTTGCTTGCAGAAAAAAATGGATTTCTGCAGTGCCATATAGAAAATTT
TAGCACTGAGTTTCTTACATCTTCTCTTATGAATATTCAGCATTTTTTGGAGGATGAAAC
TGTTGCAACAGTGATGCCAATGAAGATACAAGTTTCTAACACAAAAATAAATTTAAAGGA
TGACAGTCCTCGCAGTAGTACAATATCCCTTGAACCAGCTCCTGTAACTGTTCATATTGA
TCACCTTGTGGTAGAGAGAAATGACGATGGCTCTTTTCATATCAGAGATTCTTACGTGTT
TAACACTGAAAATGATTTGAAAGAAAATGTCAGAAGTGACTCAGTGCTGCTTACCAGTGG
AAAGTGTGATCTGAAGAAACAACACAGTGTCACTCAGGCCACTCAGACAAGCCCAGAAGT
TCCTTGGCCTTCCCAGTCACCCAACTTTCCTGAGTGCTCCTTTGACTTTACTAGAGAACA
GCTCATGGAAGAGAATGAATCTCTTAAGCAAGAATTGGCTAAAGCCAAAATGGCTCTTGC
AGAGGCTCACTTGGAAAAAGATGCTCTTCTTCATCGTATAAAGAAGATGACAGTTGAATA
GCATGAGTGGCAGTCAAAAACTCAAATTACAGCTCTGGAGTATGGAGGTTATATTTATAA
TGTGATGCTACCAATTAGTGGAAGACTTTTCTTTTCATGAAAAGACAATAAAATGAAATA
GAATGTGATGAAGTGGTGACTATTCCAAAGCCAGTTTAGAAAATACTAGGTACGGGCATT
ACAATCTTTTGGTTGTTTTGTGTTTTGGGATTTAACCCTCTTTTAAACTGGTGTGATATA
CAGGGAAGTCATTGCATACTGTAAAAATAAGTACATGCACAATGAAAAGAAGTTGTCATT
TCCTAATTTTGGTATTACATTATAGGCATTTTTTAAAAAGAAAAATGAAAATCTATTGTG
TTCGCACAGATTTCTGAATTTATCTATCACTCTGTTAATAATTTACTATTATTTACAAAG
ATTCAGATGCTTTTAGGGCTAATGTAAAATAAAAGGAGGCTTACATCTTAAATGTTATTG
AAATTATGTACTTAAATCTATAACTATTTAATTACTGTAAAAAAAAGTCCAATCAAATTA
ATAAATTATCTTGATTGCCGGATTTTGAAAATTCTGGAAAATTATCACCCTACTGAACTT
ACAAAGTAATTCGAAATGTGAAAAAGAAGTCGTTTTAAATGATGGGTAAACTGTAAGTTG
AAGCTATAATCTTCAACAAAAAAGATGGTACAAATGTTAAAATAAAAAGCACAAACTGTA
AAAAGGCATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAATACACTCTTTGCTTGCAGAAAAAAATGGATTTCTGCAGTGCCATATAGAAAATTT
TAGCACTGAGTTTCTTACATCTTCTCTTATGAATATTCAGCATTTTTTGGAGGATGAAAC
TGTTGCAACAGTGATGCCAATGAAGATACAAGTTTCTAACACAAAAATAAATTTAAAGGA
TGACAGTCCTCGCAGTAGTACAATATCCCTTGAACCAGCTCCTGTAACTGTTCATATTGA
TCACCTTGTGGTAGAGAGAAATGACGATGGCTCTTTTCATATCAGAGATTCTTACGTGTT
TAACACTGAAAATGATTTGAAAGAAAATGTCAGAAGTGACTCAGTGCTGCTTACCAGTGG
AAAGTGTGATCTGAAGAAACAACACAGTGTCACTCAGGCCACTCAGACAAGCCCAGAAGT
TCCTTGGCCTTCCCAGTCACCCAACTTTCCTGAGTGCTCCTTTGACTTTACTAGAGAACA
GCTCATGGAAGAGAATGAATCTCTTAAGCAAGAATTGGCTAAAGCCAAAATGGCTCTTGC
AGAGGCTCACTTGGAAAAAGATGCTCTTCTTCATCGTATAAAGAAGATGACAGTTGAATA
GCATGAGTGGCAGTCAAAAACTCAAATTACAGCTCTGGAGTATGGAGGTTATATTTATAA
TGTGATGCTACCAATTAGTGGAAGACTTTTCTTTTCATGAAAAGACAATAAAATGAAATA
GAATGTGATGAAGTGGTGACTATTCCAAAGCCAGTTTAGAAAATACTAGGTACGGGCATT
ACAATCTTTTGGTTGTTTTGTGTTTTGGGATTTAACCCTCTTTTAAACTGGTGTGATATA
CAGGGAAGTCATTGCATACTGTAAAAATAAGTACATGCACAATGAAAAGAAGTTGTCATT
TCCTAATTTTGGTATTACATTATAGGCATTTTTTAAAAAGAAAAATGAAAATCTATTGTG
TTCGCACAGATTTCTGAATTTATCTATCACTCTGTTAATAATTTACTATTATTTACAAAG
ATTCAGATGCTTTTAGGGCTAATGTAAAATAAAAGGAGGCTTACATCTTAAATGTTATTG
AAATTATGTACTTAAATCTATAACTATTTAATTACTGTAAAAAAAAGTCCAATCAAATTA
ATAAATTATCTTGATTGCCGGATTTTGAAAATTCTGGAAAATTATCACCCTACTGAACTT
ACAAAGTAATTCGAAATGTGAAAAAGAAGTCGTTTTAAATGATGGGTAAACTGTAAGTTG
AAGCTATAATCTTCAACAAAAAAGATGGTACAAATGTTAAAATAAAAAGCACAAACTGTA
AAAAGGCATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61888292|ref|XP_613361.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888292|ref|XP_613361.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               479-597, + strand, RNAz p=0.832788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-597, + strand, RNAz p=0.832788

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-177, gnl|bosTau2|chr3 (12556530-12556706)
               

               
               1-177, gnl|Hg17|chr12 (98944366-98944190)
               

               
               1-177, gnl|Mm7|chr10 (89370335-89370511)
               


               
               479-1328, gnl|bosTau2|chr3 (12568377-12569205)
               

               
               479-1328, gnl|Hg17|chr12 (98934004-98933171)
               

               
               479-1328, gnl|Mm7|chr10 (89376704-89377447)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr3 (12556530-12556706)
               

               
               1-177, gnl|Hg17|chr12 (98944366-98944190)
               

               
               1-177, gnl|Mm7|chr10 (89370335-89370511)
               


               
               479-1328, gnl|bosTau2|chr3 (12568377-12569205)
               

               
               479-1328, gnl|Hg17|chr12 (98934004-98933171)
               

               
               479-1328, gnl|Mm7|chr10 (89376704-89377447)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cte (1.75644)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.75644)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-177, gnl\|bosTau2\|chr3 (12556530-12556706)
	1-177, gnl\|Hg17\|chr12 (98944366-98944190)
	1-177, gnl\|Mm7\|chr10 (89370335-89370511)

	479-1328, gnl\|bosTau2\|chr3 (12568377-12569205)
	479-1328, gnl\|Hg17\|chr12 (98934004-98933171)
	479-1328, gnl\|Mm7\|chr10 (89376704-89377447)

	cte (1.75644)
	tes (0.415628)
	kid (0.389206)
	fcc (0.197785)
	aor (0.195274)
	lin (0.145603)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)