Non-Coding RNA Search

Ss1.1-Pig4-TMW8058O14.3.5

Sequence:


               
               GGGAATCAAGTCCCCCTTCCAGATTACTGTCTCCTGAATAGTTGCAATCTTGGCAACTTG
AGATTGGTGCTATGCTGTTTTGTGTGCCTTCCTTGGTTCTGCTGAGGTATTTTCATGATC
CCACCATGGTCATATCTTTTGGTAAGGTCTAGAAAATCCCCTTAGTATTTTATTACATTG
AAGCAGTTACATTGCAAGAATTATTCTGAACATTTACCAGGACACATCAGTGATGTTTTA
TAGTAGCATAATAGCCCAGATAATTTTCCATTAAAAAAAAATTCCAAGCCAAGTGGATTG
AGCATTTAACCATTTTTAGAGTAATAAAACTGATTGCTATATGTTTTATCAAAGCTTAAT
AAGTAACTTTTAAAAAGCATCCTCATAAGTATTGATACTTTTATTCTAATAGTTCATATA
TACCTATTTTCACTTTAAGGAAAAAAAAAATACACCTCATTTTAGAAATACAGTACAGCT
TCTAGATTTTTTTGATACCAAATGGTGCTCACATTGACTGAACATCCCAAATAAGGATGA
TTTTCAGTGACTTTGTGAAATCTGCTGAACAAGTTGTGATAATAGAAAAAAATATTACTT
TGTCCTCAGATGACTGTTATAGCATGGATCTTTGCTCAAACATTTTTGATATGACCTTCC
ATTCAGTTAGCTCCATAACTTTTACAGTCCAGCACTTTGGAGATTTTCTTGTCAATTAGA
ATCAATTTTTCAAAATAGCCATGAGACAGTTTCTTTTTCTTGAAAATCTTGTATGTTCAA
ATCAGCATAAATGTTAAACGTCATTACACTGTATATGGTGGTAACAGACTCTGGAAGCAA
TTGCCAAGATGTATTCTATTTTTATGAAGTGTATATAGATATTACCTTAGTGTGTATTTT
CTATATAATATCTTGATGGACTCTTTTATAAAATTATTTTATAAAACAAAATATCGTTAC
AGTAAAACCTGCCTAAATAAAACGTTTTCACATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAATCAAGTCCCCCTTCCAGATTACTGTCTCCTGAATAGTTGCAATCTTGGCAACTTG
AGATTGGTGCTATGCTGTTTTGTGTGCCTTCCTTGGTTCTGCTGAGGTATTTTCATGATC
CCACCATGGTCATATCTTTTGGTAAGGTCTAGAAAATCCCCTTAGTATTTTATTACATTG
AAGCAGTTACATTGCAAGAATTATTCTGAACATTTACCAGGACACATCAGTGATGTTTTA
TAGTAGCATAATAGCCCAGATAATTTTCCATTAAAAAAAAATTCCAAGCCAAGTGGATTG
AGCATTTAACCATTTTTAGAGTAATAAAACTGATTGCTATATGTTTTATCAAAGCTTAAT
AAGTAACTTTTAAAAAGCATCCTCATAAGTATTGATACTTTTATTCTAATAGTTCATATA
TACCTATTTTCACTTTAAGGAAAAAAAAAATACACCTCATTTTAGAAATACAGTACAGCT
TCTAGATTTTTTTGATACCAAATGGTGCTCACATTGACTGAACATCCCAAATAAGGATGA
TTTTCAGTGACTTTGTGAAATCTGCTGAACAAGTTGTGATAATAGAAAAAAATATTACTT
TGTCCTCAGATGACTGTTATAGCATGGATCTTTGCTCAAACATTTTTGATATGACCTTCC
ATTCAGTTAGCTCCATAACTTTTACAGTCCAGCACTTTGGAGATTTTCTTGTCAATTAGA
ATCAATTTTTCAAAATAGCCATGAGACAGTTTCTTTTTCTTGAAAATCTTGTATGTTCAA
ATCAGCATAAATGTTAAACGTCATTACACTGTATATGGTGGTAACAGACTCTGGAAGCAA
TTGCCAAGATGTATTCTATTTTTATGAAGTGTATATAGATATTACCTTAGTGTGTATTTT
CTATATAATATCTTGATGGACTCTTTTATAAAATTATTTTATAAAACAAAATATCGTTAC
AGTAAAACCTGCCTAAATAAAACGTTTTCACATCCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               33-996, gnl|bosTau2|chr16 (49226370-49225399)
               

               
               33-996, gnl|Hg17|chr1 (182890727-182891729)
               

               
               33-996, gnl|Mm7|chr1 (150489110-150488179)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-996, gnl|bosTau2|chr16 (49226370-49225399)
               

               
               33-996, gnl|Hg17|chr1 (182890727-182891729)
               

               
               33-996, gnl|Mm7|chr1 (150489110-150488179)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               liv (0.877706)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.877706)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

	33-996, gnl\|bosTau2\|chr16 (49226370-49225399)
	33-996, gnl\|Hg17\|chr1 (182890727-182891729)
	33-996, gnl\|Mm7\|chr1 (150489110-150488179)

	liv (0.877706)
	fco (0.314416)
	spl (0.286369)
	tra (0.246184)
	mgp (0.230681)
	aor (0.195274)
	isp (0.150376)
	bfe (0.149858)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	eru (0.120048)