Ss1.1-Pig4-TMW8058P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCAGCAAGACCGTGGAATATCTGCACTCCCAGGGAGTTGTGCACAGGGACCTCAAGCC CAGCAACATCCTGTATGTTGACGAGTCTGGAAACCCCGAGTGCCTGCGTATCTGTGACTT TGGCTTTGCCAAGCAGCTGCGGGCTGAGAATGGGCTTCTCATGACACCTTGCTATACTGC CAACTTTGTGGCACCTGAGGTACTGAAGCGCCAGGGCTATGACGAGGGCTGTGACATCTG GAGCCTGGGCATCCTGCTCTACACCATGCTGGCGGGATATACTCCATTTGCCAACGGACC CAGTGACACACCGGAGGAAATCCTGACCCGGATCGGCAGTGGGAAGTTTACCCTCAGCGG GGGAAATTGGAACACGGTTTCGGACGCAGCCAAGGACCTAGTGTCCAAGATGCTGCACGT GGACCCCCACCAACGCCTCACAGCTAAGCAGGTCCTGCAGCACCCATGGATCACGCAGAA AGACAAGCTTCCCCAGAGCCAGCTGTCCCACCAGGACTTGCAGCTTGTAAAGGGCGCCAT GGCAGCTACATACTCTGCGCTCAACAGCTCCAAGCCCACCCCTCAGCTGAAGCCCATCGA GTCATCTATCCTGGCCCAGCGGCGGGTGAGGAAGCTGCCATCCACCACCCTGTGAGGGGC CAGAGCATCAGGCGCCGGGCGGTGCTAGCTCGATGGAGGCAGCATACTTCCCAGAGGGAG CAGGCCTGAGTCACAGGGCCAAAGGGAGCGGAGCCCGAGGGGCCCAGGAAGCAGCCAGCC CCGATCACCCCAGTGAGGGTGTGAGAAGTGCCTTCTCCTTCCCCAGGATGGACTCTTCTC AGCTCAGGCTCTGCTGCTGGTTGAAATCAATCCACTGTACAGACTCATCTTTTTTTAAGG AAAAATGGCATCAACCACCATGGATTTTTACAGAATCCACTTGACTTTTCTGGGAGCAGA AGTAGCCAGTGCGGCCCCAGGAGGGGAACTGAGTCACACTATGGCTCTCTGTGGCTGAGA CTCCTTACAGCAGCTTTGGGGTCACCCCAAGGGGTTCCCCACGATTGGCTGTCTGTAGCC AGCTGTGCCCACCTCCGAGGCAGCCAGCATCACCTTCCAGAGCCGCTGGCTGTTTCGCAG AACTTGCTCTGTCCCCAACAGCTCCTTTTCTGTTCTGTTCTGTTCCGGGGTCTGGAACCA CTTTCTGCTAGAGGAGAGGACCAAGGCCCCGTGGCTCCCAGCTCCAGGCACCAGCATCCA CCCGGGCCCCTCCAGTGGGTCCCCTGCAATCAGGTTGGGCAGCCCCTGGAGGAGCATCCG GAAAGCACTTTTTGGCTGACTTCTGCTGGAGTCTGCCACAGGACAGAGTTCACAGGAGGC CTGTGGGGCGGGCCCAGAGAGGCAGGGGCTTTTTTCATTTCTTCCTCAGCTGGTAACTCA GGGCTTATCTGTCCATGGCCTTTCTAATAAAATTACAGTTGAGTTGAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCAGCAAGACCGTGGAATATCTGCACTCCCAGGGAGTTGTGCACAGGGACCTCAAGCC CAGCAACATCCTGTATGTTGACGAGTCTGGAAACCCCGAGTGCCTGCGTATCTGTGACTT TGGCTTTGCCAAGCAGCTGCGGGCTGAGAATGGGCTTCTCATGACACCTTGCTATACTGC CAACTTTGTGGCACCTGAGGTACTGAAGCGCCAGGGCTATGACGAGGGCTGTGACATCTG GAGCCTGGGCATCCTGCTCTACACCATGCTGGCGGGATATACTCCATTTGCCAACGGACC CAGTGACACACCGGAGGAAATCCTGACCCGGATCGGCAGTGGGAAGTTTACCCTCAGCGG GGGAAATTGGAACACGGTTTCGGACGCAGCCAAGGACCTAGTGTCCAAGATGCTGCACGT GGACCCCCACCAACGCCTCACAGCTAAGCAGGTCCTGCAGCACCCATGGATCACGCAGAA AGACAAGCTTCCCCAGAGCCAGCTGTCCCACCAGGACTTGCAGCTTGTAAAGGGCGCCAT GGCAGCTACATACTCTGCGCTCAACAGCTCCAAGCCCACCCCTCAGCTGAAGCCCATCGA GTCATCTATCCTGGCCCAGCGGCGGGTGAGGAAGCTGCCATCCACCACCCTGTGAGGGGC CAGAGCATCAGGCGCCGGGCGGTGCTAGCTCGATGGAGGCAGCATACTTCCCAGAGGGAG CAGGCCTGAGTCACAGGGCCAAAGGGAGCGGAGCCCGAGGGGCCCAGGAAGCAGCCAGCC CCGATCACCCCAGTGAGGGTGTGAGAAGTGCCTTCTCCTTCCCCAGGATGGACTCTTCTC AGCTCAGGCTCTGCTGCTGGTTGAAATCAATCCACTGTACAGACTCATCTTTTTTTAAGG AAAAATGGCATCAACCACCATGGATTTTTACAGAATCCACTTGACTTTTCTGGGAGCAGA AGTAGCCAGTGCGGCCCCAGGAGGGGAACTGAGTCACACTATGGCTCTCTGTGGCTGAGA CTCCTTACAGCAGCTTTGGGGTCACCCCAAGGGGTTCCCCACGATTGGCTGTCTGTAGCC AGCTGTGCCCACCTCCGAGGCAGCCAGCATCACCTTCCAGAGCCGCTGGCTGTTTCGCAG AACTTGCTCTGTCCCCAACAGCTCCTTTTCTGTTCTGTTCTGTTCCGGGGTCTGGAACCA CTTTCTGCTAGAGGAGAGGACCAAGGCCCCGTGGCTCCCAGCTCCAGGCACCAGCATCCA CCCGGGCCCCTCCAGTGGGTCCCCTGCAATCAGGTTGGGCAGCCCCTGGAGGAGCATCCG GAAAGCACTTTTTGGCTGACTTCTGCTGGAGTCTGCCACAGGACAGAGTTCACAGGAGGC CTGTGGGGCGGGCCCAGAGAGGCAGGGGCTTTTTTCATTTCTTCCTCAGCTGGTAACTCA GGGCTTATCTGTCCATGGCCTTTCTAATAAAATTACAGTTGAGTTGAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 688-805, - strand, RNAz p=0.828461 | |
| 1041-1155, + strand, RNAz p=0.825206 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 688-805, - strand, RNAz p=0.828461 | |
| 1041-1155, + strand, RNAz p=0.825206 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001006665, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 38-201, gnl|bosTau2|chr2 (78454209-78454372) | |
| 38-201, gnl|canFam2|chr2 (76392032-76391855) | |
| 38-201, gnl|danRer3|chr17 (31456067-31456243) | |
| 38-201, gnl|dasNov1|scaffold_136595 (526-703) | |
| 38-201, gnl|echTel1|scaffold_323702 (36035-35858) | |
| 38-201, gnl|fr1|chrUn (55385878-55386055) | |
| 38-201, gnl|galGal2|chr23 (114261-114089) | |
| 38-201, gnl|hg17|chr1 (26582076-26582253) | |
| 38-201, gnl|Hg17|chr1 (26582082-26582245) | |
| 38-201, gnl|loxAfr1|scaffold_19913 (5376-5200) | |
| 38-201, gnl|mm7|chr4 (133229767-133229593) | |
| 38-201, gnl|Mm7|chr4 (133229759-133229596) | |
| 38-201, gnl|monDom2|scaffold_91 (4211030-4211207) | |
| 38-201, gnl|oryCun1|scaffold_29045 (305-131) | |
| 38-201, gnl|panTro1|chr1 (27271912-27272089) | |
| 38-201, gnl|rheMac2|chr1 (29213698-29213875) | |
| 38-201, gnl|rn3|chr5 (151294358-151294534) | |
| 38-201, gnl|tetNig1|chr10 (6983579-6983752) | |
| 38-201, gnl|xenTro1|scaffold_98 (838289-838122) | |
| 276-395, gnl|bosTau2|chr2 (78454956-78455075) | |
| 276-395, gnl|canFam2|chr2 (76391291-76391148) | |
| 276-395, gnl|danRer3|chr17 (31457803-31457948) | |
| 276-395, gnl|dasNov1|scaffold_136595 (1200-1345) | |
| 276-395, gnl|echTel1|scaffold_323702 (35409-35265) | |
| 276-395, gnl|fr1|chrUn (55386277-55386405) | |
| 276-395, gnl|galGal2|chr23 (113402-113259) | |
| 276-395, gnl|hg17|chr1 (26582801-26582945) | |
| 276-395, gnl|Hg17|chr1 (26582808-26582927) | |
| 276-395, gnl|loxAfr1|scaffold_19913 (4743-4600) | |
| 276-395, gnl|mm7|chr4 (133229261-133229120) | |
| 276-395, gnl|Mm7|chr4 (133229252-133229133) | |
| 276-395, gnl|monDom2|scaffold_91 (4213388-4213534) | |
| 276-395, gnl|oryCun1|scaffold_185072 (14810-14941) | |
| 276-395, gnl|panTro1|chr1 (27272631-27272775) | |
| 276-395, gnl|rheMac2|chr1 (29214411-29214555) | |
| 276-395, gnl|rn3|chr5 (151294903-151295044) | |
| 276-395, gnl|tetNig1|chr10 (6983985-6984113) | |
| 276-395, gnl|xenTro1|scaffold_98 (836665-836535) | |
| 531-1488, gnl|bosTau2|chr2 (78456795-78457748) | |
| 531-1488, gnl|Hg17|chr1 (26584710-26585658) | |
| 531-1488, gnl|Mm7|chr4 (133226609-133225723) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-201, gnl|bosTau2|chr2 (78454209-78454372) | |
| 38-201, gnl|canFam2|chr2 (76392032-76391855) | |
| 38-201, gnl|danRer3|chr17 (31456067-31456243) | |
| 38-201, gnl|dasNov1|scaffold_136595 (526-703) | |
| 38-201, gnl|echTel1|scaffold_323702 (36035-35858) | |
| 38-201, gnl|fr1|chrUn (55385878-55386055) | |
| 38-201, gnl|galGal2|chr23 (114261-114089) | |
| 38-201, gnl|hg17|chr1 (26582076-26582253) | |
| 38-201, gnl|Hg17|chr1 (26582082-26582245) | |
| 38-201, gnl|loxAfr1|scaffold_19913 (5376-5200) | |
| 38-201, gnl|mm7|chr4 (133229767-133229593) | |
| 38-201, gnl|Mm7|chr4 (133229759-133229596) | |
| 38-201, gnl|monDom2|scaffold_91 (4211030-4211207) | |
| 38-201, gnl|oryCun1|scaffold_29045 (305-131) | |
| 38-201, gnl|panTro1|chr1 (27271912-27272089) | |
| 38-201, gnl|rheMac2|chr1 (29213698-29213875) | |
| 38-201, gnl|rn3|chr5 (151294358-151294534) | |
| 38-201, gnl|tetNig1|chr10 (6983579-6983752) | |
| 38-201, gnl|xenTro1|scaffold_98 (838289-838122) | |
| 276-395, gnl|bosTau2|chr2 (78454956-78455075) | |
| 276-395, gnl|canFam2|chr2 (76391291-76391148) | |
| 276-395, gnl|danRer3|chr17 (31457803-31457948) | |
| 276-395, gnl|dasNov1|scaffold_136595 (1200-1345) | |
| 276-395, gnl|echTel1|scaffold_323702 (35409-35265) | |
| 276-395, gnl|fr1|chrUn (55386277-55386405) | |
| 276-395, gnl|galGal2|chr23 (113402-113259) | |
| 276-395, gnl|hg17|chr1 (26582801-26582945) | |
| 276-395, gnl|Hg17|chr1 (26582808-26582927) | |
| 276-395, gnl|loxAfr1|scaffold_19913 (4743-4600) | |
| 276-395, gnl|mm7|chr4 (133229261-133229120) | |
| 276-395, gnl|Mm7|chr4 (133229252-133229133) | |
| 276-395, gnl|monDom2|scaffold_91 (4213388-4213534) | |
| 276-395, gnl|oryCun1|scaffold_185072 (14810-14941) | |
| 276-395, gnl|panTro1|chr1 (27272631-27272775) | |
| 276-395, gnl|rheMac2|chr1 (29214411-29214555) | |
| 276-395, gnl|rn3|chr5 (151294903-151295044) | |
| 276-395, gnl|tetNig1|chr10 (6983985-6984113) | |
| 276-395, gnl|xenTro1|scaffold_98 (836665-836535) | |
| 531-1488, gnl|bosTau2|chr2 (78456795-78457748) | |
| 531-1488, gnl|Hg17|chr1 (26584710-26585658) | |
| 531-1488, gnl|Mm7|chr4 (133226609-133225723) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| cga (0.279096) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| cga (0.279096) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cag (0.151194) | |
| eru (0.120048) |