Non-Coding RNA Search

Ss1.1-Pig4-TMW8058P09.5

Sequence:


               
               TGAGCTGCTGCCCGACGTGCAGGGGCGCCCTGACGCCCAGCATCAGGAACCTGGCTATGG
AGAAGGTGGCCTCGGCAGTCCTGTTTCCCTGCAAGTATGCCACCACGGGCTGTTCCCTGA
CCTTGCACCACACGGAGAAACCAGAACACGAAGACATCTGTGAATACCGTCCCTACTCCT
GCCCTTGTCCTGGCGCTTCCTGCAAGTGGCAGGGGTCCCTGGAAGCCGTGATGTCCCATC
TCATGCACGCCCATAAGAGCATCACCACCCTCCAGGGGGAAGACATCGTCTTTCTGGCCA
CAGACATTAACCTGCCAGGGGCCGTGGACTGGGTGATGATGCAGTCCTGTTTCGGCCATC
ACTTCATGCTGGTGCTGGAGAAACAGGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCCA
TCGTCCTGCTCATTGGCACCCGCAAGCAGGCCGAGAACTTCGCCTACAGACTGGAGTTGA
ACGGGAACCGGAGGAGACTGACCTGGGAGGCCACGCCACGCTCCATCCACGACGGCGTGT
CTGCAGCCATCATGAACAGCGACTGCCTGGTGTTCGACACAGCCATAGCGCATCTTTTTG
CAGATAATGGGAACCTTGGAATCAATGTGACTATTTCTACCTGTTGTCCGTGATGCACCG
AAATGATGTGGGCAGAACACTCTATGGTTAATAAAGGTTTTTATAGATGTTTTATTCGCT
ATGTCGTCACAAGTCAAGACCCACAGTTACCCCATGTTCTGTTCGAACAGCAGCTTCCCG
TCTGGCGTTGGCCCAACAAAAGTTCATTAAACTGGGATGGATGAGGTTGGCCTGTTAGTC
ATTTGGAGGCCGCTCCACGCTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCTGCTGCCCGACGTGCAGGGGCGCCCTGACGCCCAGCATCAGGAACCTGGCTATGG
AGAAGGTGGCCTCGGCAGTCCTGTTTCCCTGCAAGTATGCCACCACGGGCTGTTCCCTGA
CCTTGCACCACACGGAGAAACCAGAACACGAAGACATCTGTGAATACCGTCCCTACTCCT
GCCCTTGTCCTGGCGCTTCCTGCAAGTGGCAGGGGTCCCTGGAAGCCGTGATGTCCCATC
TCATGCACGCCCATAAGAGCATCACCACCCTCCAGGGGGAAGACATCGTCTTTCTGGCCA
CAGACATTAACCTGCCAGGGGCCGTGGACTGGGTGATGATGCAGTCCTGTTTCGGCCATC
ACTTCATGCTGGTGCTGGAGAAACAGGAGAAGTACGAGGGCCACCAGCAGTTCTTTGCCA
TCGTCCTGCTCATTGGCACCCGCAAGCAGGCCGAGAACTTCGCCTACAGACTGGAGTTGA
ACGGGAACCGGAGGAGACTGACCTGGGAGGCCACGCCACGCTCCATCCACGACGGCGTGT
CTGCAGCCATCATGAACAGCGACTGCCTGGTGTTCGACACAGCCATAGCGCATCTTTTTG
CAGATAATGGGAACCTTGGAATCAATGTGACTATTTCTACCTGTTGTCCGTGATGCACCG
AAATGATGTGGGCAGAACACTCTATGGTTAATAAAGGTTTTTATAGATGTTTTATTCGCT
ATGTCGTCACAAGTCAAGACCCACAGTTACCCCATGTTCTGTTCGAACAGCAGCTTCCCG
TCTGGCGTTGGCCCAACAAAAGTTCATTAAACTGGGATGGATGAGGTTGGCCTGTTAGTC
ATTTGGAGGCCGCTCCACGCTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19550385|gb|AAL91363.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19550385|gb|AAL91363.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-646, + strand, RNAz p=0.669786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-646, + strand, RNAz p=0.669786

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-646, gnl|bosTau2|chr18 (17419845-17420482)
               

               
               6-646, gnl|Hg17|chr16 (46953630-46952993)
               

               
               6-646, gnl|Mm7|chr8 (85316194-85315557)
               


               
               178-465, gnl|bosTau2|chr12 (7009425-7009709)
               

               
               178-465, gnl|Hg17|chr13 (45256018-45255728)
               

               
               178-465, gnl|Mm7|chr14 (70205971-70206255)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-646, gnl|bosTau2|chr18 (17419845-17420482)
               

               
               6-646, gnl|Hg17|chr16 (46953630-46952993)
               

               
               6-646, gnl|Mm7|chr8 (85316194-85315557)
               


               
               178-465, gnl|bosTau2|chr12 (7009425-7009709)
               

               
               178-465, gnl|Hg17|chr13 (45256018-45255728)
               

               
               178-465, gnl|Mm7|chr14 (70205971-70206255)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sto (0.179824)
               

               
               ton (0.1755)
               

               
               che (0.136314)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               che (0.136314)

	6-646, gnl\|bosTau2\|chr18 (17419845-17420482)
	6-646, gnl\|Hg17\|chr16 (46953630-46952993)
	6-646, gnl\|Mm7\|chr8 (85316194-85315557)

	178-465, gnl\|bosTau2\|chr12 (7009425-7009709)
	178-465, gnl\|Hg17\|chr13 (45256018-45255728)
	178-465, gnl\|Mm7\|chr14 (70205971-70206255)