Ss1.1-Pig4-TMW8058P15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCCTCAGGACCAGGCGGGCCCCGGAGGAGCCCCACGCGTCGCCAGCCGCAACCTGTT CCCCAAAGACACTTTAATGAACCTGCACGTGTACATCTCAGAGCACGAGCACTTTACAGA CTTCAATGCCACGTCGGCGCTCTTCTGGGAGCAGCATGACCTCGTGTATGGCGACTGGAC TAGTGGCGAGAACTCAGACGGCTGCTACGAGCACTTCGCCGAGCTCGACATTCCACAGAG TGTCCAGCAGAACGGCTCCATCTACATCCACGTCTACTTCACCAAGAGTGGCTTCCACCC GGACCCCCGGCAGAAGGCGCTGTACCGCCGGCTCGCCACAGTCCACATGTCTCGGATGAT CAACAAATACAAGCGCCGGCGGTTTCAGAAAACCAAGAACCTGTTGACGGGAGAGACAGA AGCTGACCCAGAAATGATCAAGAGGGCCGAGGACTACGGGCCTGTGGAGGTGATCTCCCA CTGGCACCCCAACATCACCATCAACATCGTGGACGACCACACGCCGTGGGTGAAGGGCAG CGTGCCTCCGCCCCTGGACCAGTACGTGAAGTTTGACGCGGTGAGCGGTGACTACTACCC CATCATCTACTTCAATGACTACTGGAACCTGCAGAAGGACTACTACCCCATCAATGAGAG TCTGGCCAGCCTGCCGCTCCGCGTCTCCTTCTGCCCGCTCTCGCTCTGGCGCTGGCAGCT CTACGCCGCCCAGAGCACCAAGTCCCCCTGGAACTTCTTGGGTGATGAGCTATACGAGCA GTCGGACGAGGAGCAGGACTCAGTGAAGGTTGCCCTCCTGGAGACCAACCCCTACCTGCT GGCGCTCACCATCGTCGTGTCCATCGTCCACAGCGTCTTTGAGTTCCTGGCCTTCAAGAA CGATATCCAGTTCTGGAACAGCCGGCAGTCCCTGGAGGGCCTGTCCGTGCGCTCCGTCTT CTTTGGCGTCTTCCAGTCTTTCGTGGTCCTCCTCTATATCCTGGACAATGAGACCAACTT CGTGGTCCAGGTCAGCGTCTTCATCGGGGTCCTCATCGACCTCTGGAAGATCACCAAGGT CATGGACGTCCGGCTGGACCGGGAGCACAAAGTGGCAGGACTCTTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCCTCAGGACCAGGCGGGCCCCGGAGGAGCCCCACGCGTCGCCAGCCGCAACCTGTT CCCCAAAGACACTTTAATGAACCTGCACGTGTACATCTCAGAGCACGAGCACTTTACAGA CTTCAATGCCACGTCGGCGCTCTTCTGGGAGCAGCATGACCTCGTGTATGGCGACTGGAC TAGTGGCGAGAACTCAGACGGCTGCTACGAGCACTTCGCCGAGCTCGACATTCCACAGAG TGTCCAGCAGAACGGCTCCATCTACATCCACGTCTACTTCACCAAGAGTGGCTTCCACCC GGACCCCCGGCAGAAGGCGCTGTACCGCCGGCTCGCCACAGTCCACATGTCTCGGATGAT CAACAAATACAAGCGCCGGCGGTTTCAGAAAACCAAGAACCTGTTGACGGGAGAGACAGA AGCTGACCCAGAAATGATCAAGAGGGCCGAGGACTACGGGCCTGTGGAGGTGATCTCCCA CTGGCACCCCAACATCACCATCAACATCGTGGACGACCACACGCCGTGGGTGAAGGGCAG CGTGCCTCCGCCCCTGGACCAGTACGTGAAGTTTGACGCGGTGAGCGGTGACTACTACCC CATCATCTACTTCAATGACTACTGGAACCTGCAGAAGGACTACTACCCCATCAATGAGAG TCTGGCCAGCCTGCCGCTCCGCGTCTCCTTCTGCCCGCTCTCGCTCTGGCGCTGGCAGCT CTACGCCGCCCAGAGCACCAAGTCCCCCTGGAACTTCTTGGGTGATGAGCTATACGAGCA GTCGGACGAGGAGCAGGACTCAGTGAAGGTTGCCCTCCTGGAGACCAACCCCTACCTGCT GGCGCTCACCATCGTCGTGTCCATCGTCCACAGCGTCTTTGAGTTCCTGGCCTTCAAGAA CGATATCCAGTTCTGGAACAGCCGGCAGTCCCTGGAGGGCCTGTCCGTGCGCTCCGTCTT CTTTGGCGTCTTCCAGTCTTTCGTGGTCCTCCTCTATATCCTGGACAATGAGACCAACTT CGTGGTCCAGGTCAGCGTCTTCATCGGGGTCCTCATCGACCTCTGGAAGATCACCAAGGT CATGGACGTCCGGCTGGACCGGGAGCACAAAGTGGCAGGACTCTTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 645-804, - strand, RNAz p=0.954019 | |
| 981-1099, + strand, RNAz p=0.604271 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 645-804, - strand, RNAz p=0.954019 | |
| 981-1099, + strand, RNAz p=0.604271 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 79-238, gnl|bosTau2|chr18 (38838573-38838414) | |
| 79-238, gnl|canFam2|chr1 (113375883-113375670) | |
| 79-238, gnl|danRer3|chr15 (14029394-14029590) | |
| 79-238, gnl|dasNov1|scaffold_33480 (5130-4936) | |
| 79-238, gnl|echTel1|scaffold_267263 (12575-12779) | |
| 79-238, gnl|hg17|chr19 (50169502-50169714) | |
| 79-238, gnl|Hg17|chr19 (50169535-50169694) | |
| 79-238, gnl|loxAfr1|scaffold_8418 (1719-1931) | |
| 79-238, gnl|mm7|chr7 (17328402-17328198) | |
| 79-238, gnl|Mm7|chr7 (17328375-17328216) | |
| 79-238, gnl|monDom2|scaffold_221 (124000-123794) | |
| 79-238, gnl|oryCun1|scaffold_7848 (12312-12102) | |
| 79-238, gnl|panTro1|chr20 (47309160-47309372) | |
| 79-238, gnl|rn3|chr1 (79028529-79028338) | |
| 79-238, gnl|tetNig1|chr16 (1659068-1658872) | |
| 441-563, gnl|bosTau2|chr18 (38830933-38830811) | |
| 441-563, gnl|canFam2|chr1 (113367920-113367785) | |
| 441-563, gnl|danRer3|chr15 (14032757-14032887) | |
| 441-563, gnl|echTel1|scaffold_267263 (21071-21202) | |
| 441-563, gnl|fr1|chrUn (87388710-87388574) | |
| 441-563, gnl|hg17|chr19 (50181549-50181685) | |
| 441-563, gnl|Hg17|chr19 (50181551-50181673) | |
| 441-563, gnl|mm7|chr7 (17320617-17320486) | |
| 441-563, gnl|Mm7|chr7 (17320613-17320491) | |
| 441-563, gnl|monDom2|scaffold_221 (117305-117166) | |
| 441-563, gnl|oryCun1|scaffold_188405 (4705-4840) | |
| 441-563, gnl|panTro1|chr20 (47321252-47321388) | |
| 441-563, gnl|rn3|chr1 (79022154-79022023) | |
| 441-563, gnl|tetNig1|chr16 (1658154-1658018) | |
| 441-563, gnl|xenTro1|scaffold_105 (474296-474165) | |
| 566-810, gnl|bosTau2|chr18 (38830204-38829960) | |
| 566-810, gnl|Hg17|chr19 (50182279-50182527) | |
| 566-810, gnl|Mm7|chr7 (17320085-17319841) | |
| 902-1120, gnl|bosTau2|chr18 (38827172-38826951) | |
| 902-1120, gnl|Hg17|chr19 (50185492-50185713) | |
| 902-1120, gnl|Mm7|chr7 (17318226-17318007) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-238, gnl|bosTau2|chr18 (38838573-38838414) | |
| 79-238, gnl|canFam2|chr1 (113375883-113375670) | |
| 79-238, gnl|danRer3|chr15 (14029394-14029590) | |
| 79-238, gnl|dasNov1|scaffold_33480 (5130-4936) | |
| 79-238, gnl|echTel1|scaffold_267263 (12575-12779) | |
| 79-238, gnl|hg17|chr19 (50169502-50169714) | |
| 79-238, gnl|Hg17|chr19 (50169535-50169694) | |
| 79-238, gnl|loxAfr1|scaffold_8418 (1719-1931) | |
| 79-238, gnl|mm7|chr7 (17328402-17328198) | |
| 79-238, gnl|Mm7|chr7 (17328375-17328216) | |
| 79-238, gnl|monDom2|scaffold_221 (124000-123794) | |
| 79-238, gnl|oryCun1|scaffold_7848 (12312-12102) | |
| 79-238, gnl|panTro1|chr20 (47309160-47309372) | |
| 79-238, gnl|rn3|chr1 (79028529-79028338) | |
| 79-238, gnl|tetNig1|chr16 (1659068-1658872) | |
| 441-563, gnl|bosTau2|chr18 (38830933-38830811) | |
| 441-563, gnl|canFam2|chr1 (113367920-113367785) | |
| 441-563, gnl|danRer3|chr15 (14032757-14032887) | |
| 441-563, gnl|echTel1|scaffold_267263 (21071-21202) | |
| 441-563, gnl|fr1|chrUn (87388710-87388574) | |
| 441-563, gnl|hg17|chr19 (50181549-50181685) | |
| 441-563, gnl|Hg17|chr19 (50181551-50181673) | |
| 441-563, gnl|mm7|chr7 (17320617-17320486) | |
| 441-563, gnl|Mm7|chr7 (17320613-17320491) | |
| 441-563, gnl|monDom2|scaffold_221 (117305-117166) | |
| 441-563, gnl|oryCun1|scaffold_188405 (4705-4840) | |
| 441-563, gnl|panTro1|chr20 (47321252-47321388) | |
| 441-563, gnl|rn3|chr1 (79022154-79022023) | |
| 441-563, gnl|tetNig1|chr16 (1658154-1658018) | |
| 441-563, gnl|xenTro1|scaffold_105 (474296-474165) | |
| 566-810, gnl|bosTau2|chr18 (38830204-38829960) | |
| 566-810, gnl|Hg17|chr19 (50182279-50182527) | |
| 566-810, gnl|Mm7|chr7 (17320085-17319841) | |
| 902-1120, gnl|bosTau2|chr18 (38827172-38826951) | |
| 902-1120, gnl|Hg17|chr19 (50185492-50185713) | |
| 902-1120, gnl|Mm7|chr7 (17318226-17318007) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| eep (0.122564) |