Non-Coding RNA Search

Ss1.1-Pig4-TMW8058P16.5

Sequence:


               
               GGCGGAGCGCGGCGCCGGACGGGACTCAGAATGGCGGCCGAGCGCAAGACTAAGTTGTCC
AAGAACCTGCTGCGCATGAAGTTCATGCAAAGGGGACTGGACTCGGAAACCAAGAAACAA
CTAGAAGAGGAAGAAAAGAAAATTATTAGTGAAGAGCACTGGTACTTGGATTTGCCTGAG
CTTAAAGAAAAAGAGAGTTTCATAATAGAAGAGCAGAGTTTCTTGTTATGTGAAGATCTT
CTCTATGGAAGAATGTCATTCAGAGGATTTAATCCCGAGGTTGAGAAATTAATGCTTCAG
ATGAATGCTAAAAACAAAGCAGAAGAAGTTGAAGATGAAACAGTGGAGCTCGATGTGTCA
GATGAAGAAATGGCCAGAAGATATGAGACCTTGGTGGGGACAATTGGGAAAAAGTTTGCC
AAAAAAAGAGACCGTGCCAATTATGAAGAAGATGAAAATGGAGACATAAAGCCAATTAAA
GCAAAGAAGATGTTCTTAAAGCCCCAAGATTAAAATGGATGCCTTAAGATAGGGCTCAGG
GATGCCTCGCGAGAGCACATTTTGGAACTCATTCTATTGGTTTCTCTCTAGTCATTAGTG
TTGTTTATTTGTAAAGAAATGTATAATTGTGAAAACATGCTGTTTTTCGAACAGATGTGT
GATGGATGTTATACATCCTTTGCTTAATGGGATTCATCAGGAATGGATTTTTAACCCTTG
ATCTTCAGACGTACATAGGTACATGGTTGCTTCCTAAAGAATTATTTATCTCTGATTTTT
TTTAAATACAGCTCTCCCAGTCACTGACCTCATGTTTATAGTCTCCTTTAAATTGTTAAT
CATGTCAAACCATTTCATGCATATATTTTGGAATCAAATGTCATGAGAATTTATTATATG
TAAATTCATCAAGAACAAACATTTCTCTCCAGCCTAAGGTATTGCCATGCTACTAAATCA
TTGTCAGTGTGTGGAATTATGCTTTTTTGTTTAAAGCCTTTAAATACTGTTTAAAAATAT
TGTTCTGTAATAAATATCTGTTTCATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAGCGCGGCGCCGGACGGGACTCAGAATGGCGGCCGAGCGCAAGACTAAGTTGTCC
AAGAACCTGCTGCGCATGAAGTTCATGCAAAGGGGACTGGACTCGGAAACCAAGAAACAA
CTAGAAGAGGAAGAAAAGAAAATTATTAGTGAAGAGCACTGGTACTTGGATTTGCCTGAG
CTTAAAGAAAAAGAGAGTTTCATAATAGAAGAGCAGAGTTTCTTGTTATGTGAAGATCTT
CTCTATGGAAGAATGTCATTCAGAGGATTTAATCCCGAGGTTGAGAAATTAATGCTTCAG
ATGAATGCTAAAAACAAAGCAGAAGAAGTTGAAGATGAAACAGTGGAGCTCGATGTGTCA
GATGAAGAAATGGCCAGAAGATATGAGACCTTGGTGGGGACAATTGGGAAAAAGTTTGCC
AAAAAAAGAGACCGTGCCAATTATGAAGAAGATGAAAATGGAGACATAAAGCCAATTAAA
GCAAAGAAGATGTTCTTAAAGCCCCAAGATTAAAATGGATGCCTTAAGATAGGGCTCAGG
GATGCCTCGCGAGAGCACATTTTGGAACTCATTCTATTGGTTTCTCTCTAGTCATTAGTG
TTGTTTATTTGTAAAGAAATGTATAATTGTGAAAACATGCTGTTTTTCGAACAGATGTGT
GATGGATGTTATACATCCTTTGCTTAATGGGATTCATCAGGAATGGATTTTTAACCCTTG
ATCTTCAGACGTACATAGGTACATGGTTGCTTCCTAAAGAATTATTTATCTCTGATTTTT
TTTAAATACAGCTCTCCCAGTCACTGACCTCATGTTTATAGTCTCCTTTAAATTGTTAAT
CATGTCAAACCATTTCATGCATATATTTTGGAATCAAATGTCATGAGAATTTATTATATG
TAAATTCATCAAGAACAAACATTTCTCTCCAGCCTAAGGTATTGCCATGCTACTAAATCA
TTGTCAGTGTGTGGAATTATGCTTTTTTGTTTAAAGCCTTTAAATACTGTTTAAAAATAT
TGTTCTGTAATAAATATCTGTTTCATAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NHT4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NHT4_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               439-558, - strand, RNAz p=0.839761
               

               
               598-712, + strand, RNAz p=0.963218

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-558, - strand, RNAz p=0.839761
               

               
               598-712, + strand, RNAz p=0.963218

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-810, gnl|bosTau2|chr15 (11696120-11696922)
               

               
               4-810, gnl|Mm7|chr2 (161028107-161028871)
               


               
               813-1056, gnl|bosTau2|chr15 (11696952-11697189)
               

               
               813-1056, gnl|Hg17|chr16 (80739502-80739268)
               

               
               813-1056, gnl|Mm7|chr2 (161028903-161029130)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-810, gnl|bosTau2|chr15 (11696120-11696922)
               

               
               4-810, gnl|Mm7|chr2 (161028107-161028871)
               


               
               813-1056, gnl|bosTau2|chr15 (11696952-11697189)
               

               
               813-1056, gnl|Hg17|chr16 (80739502-80739268)
               

               
               813-1056, gnl|Mm7|chr2 (161028903-161029130)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               liv (0.585137)
               

               
               fcc (0.39557)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               fcc (0.39557)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	439-558, - strand, RNAz p=0.839761
	598-712, + strand, RNAz p=0.963218

	4-810, gnl\|bosTau2\|chr15 (11696120-11696922)
	4-810, gnl\|Mm7\|chr2 (161028107-161028871)

	813-1056, gnl\|bosTau2\|chr15 (11696952-11697189)
	813-1056, gnl\|Hg17\|chr16 (80739502-80739268)
	813-1056, gnl\|Mm7\|chr2 (161028903-161029130)

	liv (0.585137)
	fcc (0.39557)
	kid (0.389206)
	tra (0.369276)
	lin (0.291206)
	sug (0.254582)
	hea (0.204499)
	aor (0.195274)
	mcp (0.170648)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	fat (0.147427)
	spl (0.143184)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	ova (0.129132)
	bla (0.124347)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)
	ldo (0.0970026)