Ss1.1-Pig4-TMW8058P22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTTTTCGCGGACTGAAGCGCTTCAGGGTTTGAGCTGCGCGGTGGCCACGCGGTTATC AGGAGTAGCTCGCTAACGCTTCGGCAGGTTACCATGTCACACCCGTCTCCCCAGGCAAAG CCCTCCAACCCAAGTAACCCCCGAGTCTTCTTTGATGTGGACATTGGAGGGGAGCGAGTT GGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCAGAGAATTTTCGT GCGTTGTGTACAGGAGAAAAAGGCATTGGACCCACCACTGGAAAACCGCTCCATTTCAAA GGATGCCCTTTCCATCGAATTATTAAGAAATTTATGATTCAGGGTGGAGACTTCTCAAAT CAGAATGGGACAGGTGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAATTTCCAT TATAAGCATGATAAGGAGGGGTTACTGAGCATGGCAAACGCTGGCTGCAACACAAACGGT TCTCAGTTCTTCATCACAACAGTTCCAACTCCGCACTTGGATGGGAAGCATGTAGTGTTT GGCCAAGTGATTAAGGGCATGGGTGTGGCAAGGATCCTGGAAAATGTGGAGGTGAAAGGT GAAAAGCCTGCCAAATTGTGCGTTATTGCAGAGTGCGGAGAACTGAAGGAAGGGGATGAT TGGGGAATATTCCCAAAAGATGGTTCTGGTGACAGTCATCCAGATTTCCCTGAGGACGCA GATATAGATTTAAAAGATATAGATAAAATTTTATTAATAACTGAAGACTTAAAAAACATT GGAAATACTTTTTTCAAATCCCAGAAGTGGGAGATGGCCATTAAAAAATACACAAAAGTT TTAAGGTATGTGGACGGCGCGAAGGCTGTTTCTGAGGAAGCAGATGGGTTAAAACTGCAG CCTGTCGCTTTAAGCTGCATGCTGAATATTGGTGCTTGTAAACTGAAGATGTCCGATTGG CAGGGCGCAGTCGACAGTTGTTTAGAGGCCCTTGAAATAGACCCATCAAATACCAAAGCA CTGTACCGTAGAGCCCAGGGATGGCAAGGATTAAAAGAATATGATCAAGCATTGGCTGAT CTTAAGAAAGCTCAGGAGATAGCGCCAGAGGATAAAGCTATCCAGGCAGAATTGCTGAAA GTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGCTTATGCAAAAATGTTT GCTTAAAAAGGAATTCAGTTTTGCTTGTGTGCATTGATTGTATAAAGACAATAAGAAAAT GTAACGGTTTGTCTATGTATGACCCCTAATGTGTTCCCTTTGATAGTTCAGTTCCCCATT GTTTAGTGGGAGGAAAACTGATAGGGACTCTGTTAATAAACTAGTATTATAAAATACAGT GAAGTTGATTTCTTTTTAAATGGCTGTCTGCATTATTCACAACGGATAATGATGTCCAGC CTGTTTTTAAACTCCTAAAGACACAAATCTTGTTTGAATAAACAGATGAAAGCTTAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTTTTCGCGGACTGAAGCGCTTCAGGGTTTGAGCTGCGCGGTGGCCACGCGGTTATC AGGAGTAGCTCGCTAACGCTTCGGCAGGTTACCATGTCACACCCGTCTCCCCAGGCAAAG CCCTCCAACCCAAGTAACCCCCGAGTCTTCTTTGATGTGGACATTGGAGGGGAGCGAGTT GGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCAGAGAATTTTCGT GCGTTGTGTACAGGAGAAAAAGGCATTGGACCCACCACTGGAAAACCGCTCCATTTCAAA GGATGCCCTTTCCATCGAATTATTAAGAAATTTATGATTCAGGGTGGAGACTTCTCAAAT CAGAATGGGACAGGTGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAATTTCCAT TATAAGCATGATAAGGAGGGGTTACTGAGCATGGCAAACGCTGGCTGCAACACAAACGGT TCTCAGTTCTTCATCACAACAGTTCCAACTCCGCACTTGGATGGGAAGCATGTAGTGTTT GGCCAAGTGATTAAGGGCATGGGTGTGGCAAGGATCCTGGAAAATGTGGAGGTGAAAGGT GAAAAGCCTGCCAAATTGTGCGTTATTGCAGAGTGCGGAGAACTGAAGGAAGGGGATGAT TGGGGAATATTCCCAAAAGATGGTTCTGGTGACAGTCATCCAGATTTCCCTGAGGACGCA GATATAGATTTAAAAGATATAGATAAAATTTTATTAATAACTGAAGACTTAAAAAACATT GGAAATACTTTTTTCAAATCCCAGAAGTGGGAGATGGCCATTAAAAAATACACAAAAGTT TTAAGGTATGTGGACGGCGCGAAGGCTGTTTCTGAGGAAGCAGATGGGTTAAAACTGCAG CCTGTCGCTTTAAGCTGCATGCTGAATATTGGTGCTTGTAAACTGAAGATGTCCGATTGG CAGGGCGCAGTCGACAGTTGTTTAGAGGCCCTTGAAATAGACCCATCAAATACCAAAGCA CTGTACCGTAGAGCCCAGGGATGGCAAGGATTAAAAGAATATGATCAAGCATTGGCTGAT CTTAAGAAAGCTCAGGAGATAGCGCCAGAGGATAAAGCTATCCAGGCAGAATTGCTGAAA GTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGCTTATGCAAAAATGTTT GCTTAAAAAGGAATTCAGTTTTGCTTGTGTGCATTGATTGTATAAAGACAATAAGAAAAT GTAACGGTTTGTCTATGTATGACCCCTAATGTGTTCCCTTTGATAGTTCAGTTCCCCATT GTTTAGTGGGAGGAAAACTGATAGGGACTCTGTTAATAAACTAGTATTATAAAATACAGT GAAGTTGATTTCTTTTTAAATGGCTGTCTGCATTATTCACAACGGATAATGATGTCCAGC CTGTTTTTAAACTCCTAAAGACACAAATCTTGTTTGAATAAACAGATGAAAGCTTAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 616-738, + strand, RNAz p=0.854941 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 616-738, + strand, RNAz p=0.854941 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr17 (21899472-21899293) | |
| 1-181, gnl|Hg17|chr4 (160002139-160001927) | |
| 1-181, gnl|Mm7|chr3 (79696419-79696594) | |
| 298-561, gnl|bosTau2|chr10 (14393183-14393446) | |
| 298-561, gnl|canFam2|chr6 (31028356-31028099) | |
| 298-561, gnl|canFam2|chr9 (47298970-47298706) | |
| 298-561, gnl|danRer3|chr8 (39407053-39406720) | |
| 298-561, gnl|danRer3|chr8 (39407065-39406720) | |
| 298-561, gnl|dasNov1|scaffold_261643 (1089-1346) | |
| 298-561, gnl|dasNov1|scaffold_261643 (1077-1346) | |
| 298-561, gnl|echTel1|scaffold_186705 (6642-6385) | |
| 298-561, gnl|echTel1|scaffold_186705 (6654-6385) | |
| 298-561, gnl|fr1|chrUn (217324180-217324508) | |
| 298-561, gnl|fr1|chrUn (217324168-217324508) | |
| 298-561, gnl|hg17|chr17 (8404626-8404880) | |
| 298-561, gnl|Hg17|chr21 (19152112-19152375) | |
| 298-561, gnl|hg17|chr3 (44889959-44890228) | |
| 298-561, gnl|loxAfr1|scaffold_6995 (1137-885) | |
| 298-561, gnl|loxAfr1|scaffold_6995 (1149-885) | |
| 298-561, gnl|mm7|chr2 (51878821-51878564) | |
| 298-561, gnl|mm7|chr9 (96537399-96537668) | |
| 298-561, gnl|Mm7|chr9 (96537445-96537708) | |
| 298-561, gnl|monDom2|scaffold_312 (77203-76946) | |
| 298-561, gnl|monDom2|scaffold_312 (77215-76946) | |
| 298-561, gnl|oryCun1|scaffold_173019 (891-635) | |
| 298-561, gnl|oryCun1|scaffold_177612 (55478-55747) | |
| 298-561, gnl|panTro1|chr19_random (30048128-30047874) | |
| 298-561, gnl|panTro1|chr2 (46208541-46208810) | |
| 298-561, gnl|rheMac2|chr16 (8333651-8333906) | |
| 298-561, gnl|rheMac2|chr2 (91659048-91658781) | |
| 298-561, gnl|rn3|chr4_random (278172-277915) | |
| 298-561, gnl|rn3|chr4_random (278184-277915) | |
| 298-561, gnl|tetNig1|chrUn_random (755744-755379) | |
| 298-561, gnl|xenTro1|scaffold_143 (1715046-1715303) | |
| 298-561, gnl|xenTro1|scaffold_143 (1715034-1715303) | |
| 616-738, gnl|bosTau2|chr17 (21891843-21891721) | |
| 616-738, gnl|Hg17|chr4 (159994441-159994319) | |
| 616-738, gnl|Mm7|chr3 (79703826-79703948) | |
| 844-988, gnl|bosTau2|chr17 (21889445-21889301) | |
| 844-988, gnl|canFam2|chr15 (58805278-58805387) | |
| 844-988, gnl|danRer3|chrUn (125326877-125326770) | |
| 844-988, gnl|dasNov1|scaffold_8465 (34546-34657) | |
| 844-988, gnl|echTel1|scaffold_214272 (2399-2496) | |
| 844-988, gnl|fr1|chrUn (254071047-254071159) | |
| 844-988, gnl|galGal2|chr4 (22523450-22523555) | |
| 844-988, gnl|hg17|chr4 (159991860-159991972) | |
| 844-988, gnl|Hg17|chr4 (159992019-159991875) | |
| 844-988, gnl|loxAfr1|scaffold_264 (43729-43620) | |
| 844-988, gnl|mm7|chr3 (79705452-79705339) | |
| 844-988, gnl|Mm7|chr3 (79705290-79705434) | |
| 844-988, gnl|oryCun1|scaffold_149948 (918-805) | |
| 844-988, gnl|panTro1|chr3 (177422058-177422170) | |
| 844-988, gnl|rheMac2|chr5 (150886181-150886293) | |
| 844-988, gnl|rn3|chr2 (170955243-170955128) | |
| 844-988, gnl|tetNig1|chr20 (1551548-1551652) | |
| 844-988, gnl|xenTro1|scaffold_231 (892014-891908) | |
| 1116-1495, gnl|bosTau2|chr17 (21886815-21886435) | |
| 1116-1495, gnl|Hg17|chr4 (159988583-159987893) | |
| 1116-1495, gnl|Mm7|chr3 (79708063-79708397) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr17 (21899472-21899293) | |
| 1-181, gnl|Hg17|chr4 (160002139-160001927) | |
| 1-181, gnl|Mm7|chr3 (79696419-79696594) | |
| 298-561, gnl|bosTau2|chr10 (14393183-14393446) | |
| 298-561, gnl|canFam2|chr6 (31028356-31028099) | |
| 298-561, gnl|canFam2|chr9 (47298970-47298706) | |
| 298-561, gnl|danRer3|chr8 (39407053-39406720) | |
| 298-561, gnl|danRer3|chr8 (39407065-39406720) | |
| 298-561, gnl|dasNov1|scaffold_261643 (1089-1346) | |
| 298-561, gnl|dasNov1|scaffold_261643 (1077-1346) | |
| 298-561, gnl|echTel1|scaffold_186705 (6642-6385) | |
| 298-561, gnl|echTel1|scaffold_186705 (6654-6385) | |
| 298-561, gnl|fr1|chrUn (217324180-217324508) | |
| 298-561, gnl|fr1|chrUn (217324168-217324508) | |
| 298-561, gnl|hg17|chr17 (8404626-8404880) | |
| 298-561, gnl|Hg17|chr21 (19152112-19152375) | |
| 298-561, gnl|hg17|chr3 (44889959-44890228) | |
| 298-561, gnl|loxAfr1|scaffold_6995 (1137-885) | |
| 298-561, gnl|loxAfr1|scaffold_6995 (1149-885) | |
| 298-561, gnl|mm7|chr2 (51878821-51878564) | |
| 298-561, gnl|mm7|chr9 (96537399-96537668) | |
| 298-561, gnl|Mm7|chr9 (96537445-96537708) | |
| 298-561, gnl|monDom2|scaffold_312 (77203-76946) | |
| 298-561, gnl|monDom2|scaffold_312 (77215-76946) | |
| 298-561, gnl|oryCun1|scaffold_173019 (891-635) | |
| 298-561, gnl|oryCun1|scaffold_177612 (55478-55747) | |
| 298-561, gnl|panTro1|chr19_random (30048128-30047874) | |
| 298-561, gnl|panTro1|chr2 (46208541-46208810) | |
| 298-561, gnl|rheMac2|chr16 (8333651-8333906) | |
| 298-561, gnl|rheMac2|chr2 (91659048-91658781) | |
| 298-561, gnl|rn3|chr4_random (278172-277915) | |
| 298-561, gnl|rn3|chr4_random (278184-277915) | |
| 298-561, gnl|tetNig1|chrUn_random (755744-755379) | |
| 298-561, gnl|xenTro1|scaffold_143 (1715046-1715303) | |
| 298-561, gnl|xenTro1|scaffold_143 (1715034-1715303) | |
| 616-738, gnl|bosTau2|chr17 (21891843-21891721) | |
| 616-738, gnl|Hg17|chr4 (159994441-159994319) | |
| 616-738, gnl|Mm7|chr3 (79703826-79703948) | |
| 844-988, gnl|bosTau2|chr17 (21889445-21889301) | |
| 844-988, gnl|canFam2|chr15 (58805278-58805387) | |
| 844-988, gnl|danRer3|chrUn (125326877-125326770) | |
| 844-988, gnl|dasNov1|scaffold_8465 (34546-34657) | |
| 844-988, gnl|echTel1|scaffold_214272 (2399-2496) | |
| 844-988, gnl|fr1|chrUn (254071047-254071159) | |
| 844-988, gnl|galGal2|chr4 (22523450-22523555) | |
| 844-988, gnl|hg17|chr4 (159991860-159991972) | |
| 844-988, gnl|Hg17|chr4 (159992019-159991875) | |
| 844-988, gnl|loxAfr1|scaffold_264 (43729-43620) | |
| 844-988, gnl|mm7|chr3 (79705452-79705339) | |
| 844-988, gnl|Mm7|chr3 (79705290-79705434) | |
| 844-988, gnl|oryCun1|scaffold_149948 (918-805) | |
| 844-988, gnl|panTro1|chr3 (177422058-177422170) | |
| 844-988, gnl|rheMac2|chr5 (150886181-150886293) | |
| 844-988, gnl|rn3|chr2 (170955243-170955128) | |
| 844-988, gnl|tetNig1|chr20 (1551548-1551652) | |
| 844-988, gnl|xenTro1|scaffold_231 (892014-891908) | |
| 1116-1495, gnl|bosTau2|chr17 (21886815-21886435) | |
| 1116-1495, gnl|Hg17|chr4 (159988583-159987893) | |
| 1116-1495, gnl|Mm7|chr3 (79708063-79708397) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cbe (0.478469) | |
| isp (0.451128) | |
| tes (0.415628) | |
| ldo (0.38801) | |
| thg (0.380373) | |
| vin (0.332557) | |
| lin (0.291206) | |
| csk (0.281492) | |
| ese (0.253004) | |
| med (0.232504) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fat (0.147427) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.478469) | |
| isp (0.451128) | |
| tes (0.415628) | |
| ldo (0.38801) | |
| thg (0.380373) | |
| vin (0.332557) | |
| lin (0.291206) | |
| csk (0.281492) | |
| ese (0.253004) | |
| med (0.232504) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| fty (0.17584) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fat (0.147427) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ute (0.132784) | |
| sug (0.127291) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |