Ss1.1-Pig4-TMW8059A05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACGTGTAAGTTAGAGAGGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCC GCCGCAAGGTACCTCCGCACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGC GGCGACGGCGACGGCCGGGGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGT CTGTGGAGCGGCTGCAGCAGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAA GTCGCCAGGTCGTGGGGGACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGA GCCCGGAGGTGGTGGACTCCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAA TTGTAAGCGACTATGAGAAAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAG TTGGCAGTGTGACTGCTGAAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTG ACTATGACAAGGTGGAACTGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAG GATTAAGTAAAGTTCAAGCAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTT TTGAAGTGCACAACTACAACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAA TAAGTAATGGTGGATTAGAAGAAGGAAAACCTGTTGATCTCGTTCTTAGTTGTGTGGACA ATTTTGAAGCTCGAATGACAATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGG AGTCTGGGGTCAGTGAAAATGCAGTATCAGGGCATATACAGCTCATAATTCCTGGAGAAT CTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAGAAGACTC TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGAGTGGTTGCTGGGA TCTTGGTACAAAATGTATTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTG GATACAACGCAATGCAGGATTTTTTTCCTACTATGTCTATGAAGCCAAATCCTCAGTGTG ATGACAGAAATTGCAGGAAGCAGCAGGAAGAATATAAGAAAAGGGTAGCAGCATTGCCCA AGCAGGAGGCTGTTCAAGAAGAGGAAGAGATAATACATGAAGACAATGAGTGGGGTATTG AATTGGTATCTGAGGTTTCCGAAGAGGAACTGAAAAATTCTTCAGGTCCAATTCCTGACT TACCTGAAGGAATTACAGTGGCATATACAGTTCCCCAAAAGCAAGAAGATTCTGTACCTG AAGTAACAGTGGAAGATTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAGATGAAGAACA TGTAAATAATGGACCAGCCTATATTTTATTTCCTGTATTTAAGCCTTTTCCCTTGCAACA AAAACAAAAACAAACAAAAAAATCACTTTAAAACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACGTGTAAGTTAGAGAGGTGAAGGGAGCCCTTTTCCGGGGTTGTGGGCTAGCAAGGCC GCCGCAAGGTACCTCCGCACATACCTCTTGCCCGCCCAGCAGCCAACAGTGTGGGGCGGC GGCGACGGCGACGGCCGGGGCTGGGAGGGCTGGCGGCCGGGGTCCCAGCCATGGCCGAGT CTGTGGAGCGGCTGCAGCAGCGGATCCAGGAACTGGAACGGGAACTGGCCCAGGAGAGAA GTCGCCAGGTCGTGGGGGACCGCGACGGAAAAGGCGGTCGGACCCGCATCGAGAAGATGA GCCCGGAGGTGGTGGACTCCAACCCCTACAGCCGGCTGATGGCATTGAAACGAATGGGAA TTGTAAGCGACTATGAGAAAATCCGTACCTTTGCTGTAGCAATAGTAGGTGTTGGTGGAG TTGGCAGTGTGACTGCTGAAATGCTGACCAGATGTGGCATTGGTAAGTTGCTACTCTTTG ACTATGACAAGGTGGAACTGGCCAATATGAACAGACTTTTCTTCCAACCTCATCAAGCAG GATTAAGTAAAGTTCAAGCAGCAGAACATACTTTGAGGAACATTAATCCTGATGTTCTTT TTGAAGTGCACAACTACAACATAACCACAGTAGAAAACTTTGAACACTTCATGGATAGAA TAAGTAATGGTGGATTAGAAGAAGGAAAACCTGTTGATCTCGTTCTTAGTTGTGTGGACA ATTTTGAAGCTCGAATGACAATAAATACAGCTTGTAATGAGCTTGGACAAACATGGATGG AGTCTGGGGTCAGTGAAAATGCAGTATCAGGGCATATACAGCTCATAATTCCTGGAGAAT CTGCTTGTTTTGCGTGTGCTCCACCACTTGTAGTTGCTGCAAATATTGATGAGAAGACTC TGAAACGAGAAGGTGTTTGTGCAGCCAGTCTTCCTACCACTATGGGAGTGGTTGCTGGGA TCTTGGTACAAAATGTATTAAAGTTTCTGTTAAATTTTGGTACTGTTAGTTTTTACCTTG GATACAACGCAATGCAGGATTTTTTTCCTACTATGTCTATGAAGCCAAATCCTCAGTGTG ATGACAGAAATTGCAGGAAGCAGCAGGAAGAATATAAGAAAAGGGTAGCAGCATTGCCCA AGCAGGAGGCTGTTCAAGAAGAGGAAGAGATAATACATGAAGACAATGAGTGGGGTATTG AATTGGTATCTGAGGTTTCCGAAGAGGAACTGAAAAATTCTTCAGGTCCAATTCCTGACT TACCTGAAGGAATTACAGTGGCATATACAGTTCCCCAAAAGCAAGAAGATTCTGTACCTG AAGTAACAGTGGAAGATTCTGGTGAAAGCTTGGAAGACCTCATGGCCAAGATGAAGAACA TGTAAATAATGGACCAGCCTATATTTTATTTCCTGTATTTAAGCCTTTTCCCTTGCAACA AAAACAAAAACAAACAAAAAAATCACTTTAAAACTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-331, gnl|bosTau2|chr9 (59558665-59558334) | |
| 1-331, gnl|Hg17|chr3 (133861912-133862240) | |
| 1-331, gnl|Mm7|chr9 (103779253-103778931) | |
| 560-1283, gnl|bosTau2|chr3 (33714257-33713538) | |
| 560-1283, gnl|Hg17|chr3 (133871738-133877447) | |
| 665-771, gnl|bosTau2|chr2 (58319076-58318970) | |
| 665-771, gnl|canFam2|chr37 (18215267-18215377) | |
| 665-771, gnl|dasNov1|scaffold_25370 (1515-1377) | |
| 665-771, gnl|hg17|chr2 (207369090-207369221) | |
| 665-771, gnl|Mm7|chr1 (63887698-63887808) | |
| 665-771, gnl|oryCun1|scaffold_112528 (4149-4264) | |
| 665-771, gnl|panTro1|chr13 (97401871-97402002) | |
| 665-771, gnl|rheMac2|chr12 (70568457-70568587) | |
| 1300-1447, gnl|bosTau2|chr9 (59528646-59528499) | |
| 1300-1447, gnl|canFam2|chr14 (21309203-21309369) | |
| 1300-1447, gnl|dasNov1|scaffold_36004 (6128-6303) | |
| 1300-1447, gnl|echTel1|scaffold_312325 (39864-39677) | |
| 1300-1447, gnl|hg17|chr1 (223759081-223759250) | |
| 1300-1447, gnl|Hg17|chr3 (133877983-133878130) | |
| 1300-1447, gnl|loxAfr1|scaffold_34679 (17031-17202) | |
| 1300-1447, gnl|mm7|chr9 (103763660-103763823) | |
| 1300-1447, gnl|Mm7|chr9 (103763827-103763683) | |
| 1300-1447, gnl|monDom2|scaffold_6 (108239425-108239608) | |
| 1300-1447, gnl|oryCun1|scaffold_206848 (312-487) | |
| 1300-1447, gnl|panTro1|chr1 (207595221-207595390) | |
| 1300-1447, gnl|rheMac2|chr1 (143103060-143102893) | |
| 1300-1447, gnl|rn3|chr8 (109129054-109129223) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-331, gnl|bosTau2|chr9 (59558665-59558334) | |
| 1-331, gnl|Hg17|chr3 (133861912-133862240) | |
| 1-331, gnl|Mm7|chr9 (103779253-103778931) | |
| 560-1283, gnl|bosTau2|chr3 (33714257-33713538) | |
| 560-1283, gnl|Hg17|chr3 (133871738-133877447) | |
| 665-771, gnl|bosTau2|chr2 (58319076-58318970) | |
| 665-771, gnl|canFam2|chr37 (18215267-18215377) | |
| 665-771, gnl|dasNov1|scaffold_25370 (1515-1377) | |
| 665-771, gnl|hg17|chr2 (207369090-207369221) | |
| 665-771, gnl|Mm7|chr1 (63887698-63887808) | |
| 665-771, gnl|oryCun1|scaffold_112528 (4149-4264) | |
| 665-771, gnl|panTro1|chr13 (97401871-97402002) | |
| 665-771, gnl|rheMac2|chr12 (70568457-70568587) | |
| 1300-1447, gnl|bosTau2|chr9 (59528646-59528499) | |
| 1300-1447, gnl|canFam2|chr14 (21309203-21309369) | |
| 1300-1447, gnl|dasNov1|scaffold_36004 (6128-6303) | |
| 1300-1447, gnl|echTel1|scaffold_312325 (39864-39677) | |
| 1300-1447, gnl|hg17|chr1 (223759081-223759250) | |
| 1300-1447, gnl|Hg17|chr3 (133877983-133878130) | |
| 1300-1447, gnl|loxAfr1|scaffold_34679 (17031-17202) | |
| 1300-1447, gnl|mm7|chr9 (103763660-103763823) | |
| 1300-1447, gnl|Mm7|chr9 (103763827-103763683) | |
| 1300-1447, gnl|monDom2|scaffold_6 (108239425-108239608) | |
| 1300-1447, gnl|oryCun1|scaffold_206848 (312-487) | |
| 1300-1447, gnl|panTro1|chr1 (207595221-207595390) | |
| 1300-1447, gnl|rheMac2|chr1 (143103060-143102893) | |
| 1300-1447, gnl|rn3|chr8 (109129054-109129223) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cte (0.29274) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fty (0.17584) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| ebs (0.236602) | |
| tes (0.207814) | |
| fty (0.17584) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) |