Ss1.1-Pig4-TMW8059A06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGTTCTGGGAGGAGAGGGAGAGGCGGCGGCGGAGGCTGGAGAATGAAGAAGGAGCATG TGCTGCACTGTCAGTTCTCCGCGTGGTATCCACTGTTCCGAAGCCTTACCATCAAGAGTG TCATTCTTCCGCTTCCTCAGAATGTGAAGGATTATTTACTGGATGATGGAACGCTGGTGG TTTCAGGAAGGGAAGATCCGCCAGCACGTTCTCAGCCAGACAGTGATGATGAAGCAGAAG AAATACAGTGGTCAGACGACGAGAACACAGCCACGCTTACGGCACCAGAATTTCCCGAGT TCACCACTAAAGTCCAAGAAGCTATCAATTCCCTGGGGGGCAGTGTGTTTCCTAAGCTTA ACTGGAGTGCCCCAAGGGATGCATACTGGATAGCGATGAACAGCTCTCTGAAATGTAAAA CCCTCAGTGACATCTTTCTGCTCTTCAAGAGTTCCGATTTCATCACTCGTGACTTCACCC AACCATTTATTCATTGTACGGATGATTCTCCAGACCCGTGTATGGAATATGAGCTCGTTC TTCGAAAATGGTGTGAATTAATTCCTGGGGCTGAGTTCCGATGTTTCGTCAAGGAAAATA AGCTTATTGGTATTTCTCAGAGGGACTACACACAATATTATGATCATATTTCTAAGCAAA AGGAAGAGATTTGCAGATGCATACAAGACTTCTTCAAGAAACACATACAGTATAAATTCT TAGATGAAGACTTTGTGTTCGATATATATAGAGACAGTAGGGGGAAGGTGTGGCTGATTG ATTTTAACCCATTTGGTGAAGTCACAGATGCACTGCTGTTTACTTGGGAGGAGCTGTTAT CTGGGAGAAGCGTCAGAGGTGACTTGAGCGAAGGCGAAGCTCCGGAGCAGGATGCTCCAA CCTTCCGCTGCACCAACAGCGAAGTCACAGTGCAGCCGAGTCCCTACCTGAGCTACCGGC TGCCCAAGGACTTCGTGGACCTCTCAACGGGGGAGGACGCCCACAAGCTCATCGATTTCC TGAAACTGAAGAGAAATCAGCAAGAGGATGACTGATGAGTGTGCTAGCGCGCAAGGCCGA GTTCCAGAGGAAACCACCGCTGCTGCTTCGGGAGGCCACGCAGAGTCCACAGCCTCCTAT TAACCCGGTTGGGGGTGGGGGGCGCGGCGGGAAATCAGTAGCTTTTTATATTCATGTATA AAGCGGGGGGGAGAAGGAGGGACTTTGCTACTTGTACAAATAACGTAATAAAGAGATCTT AAACATAGGAAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGTTCTGGGAGGAGAGGGAGAGGCGGCGGCGGAGGCTGGAGAATGAAGAAGGAGCATG TGCTGCACTGTCAGTTCTCCGCGTGGTATCCACTGTTCCGAAGCCTTACCATCAAGAGTG TCATTCTTCCGCTTCCTCAGAATGTGAAGGATTATTTACTGGATGATGGAACGCTGGTGG TTTCAGGAAGGGAAGATCCGCCAGCACGTTCTCAGCCAGACAGTGATGATGAAGCAGAAG AAATACAGTGGTCAGACGACGAGAACACAGCCACGCTTACGGCACCAGAATTTCCCGAGT TCACCACTAAAGTCCAAGAAGCTATCAATTCCCTGGGGGGCAGTGTGTTTCCTAAGCTTA ACTGGAGTGCCCCAAGGGATGCATACTGGATAGCGATGAACAGCTCTCTGAAATGTAAAA CCCTCAGTGACATCTTTCTGCTCTTCAAGAGTTCCGATTTCATCACTCGTGACTTCACCC AACCATTTATTCATTGTACGGATGATTCTCCAGACCCGTGTATGGAATATGAGCTCGTTC TTCGAAAATGGTGTGAATTAATTCCTGGGGCTGAGTTCCGATGTTTCGTCAAGGAAAATA AGCTTATTGGTATTTCTCAGAGGGACTACACACAATATTATGATCATATTTCTAAGCAAA AGGAAGAGATTTGCAGATGCATACAAGACTTCTTCAAGAAACACATACAGTATAAATTCT TAGATGAAGACTTTGTGTTCGATATATATAGAGACAGTAGGGGGAAGGTGTGGCTGATTG ATTTTAACCCATTTGGTGAAGTCACAGATGCACTGCTGTTTACTTGGGAGGAGCTGTTAT CTGGGAGAAGCGTCAGAGGTGACTTGAGCGAAGGCGAAGCTCCGGAGCAGGATGCTCCAA CCTTCCGCTGCACCAACAGCGAAGTCACAGTGCAGCCGAGTCCCTACCTGAGCTACCGGC TGCCCAAGGACTTCGTGGACCTCTCAACGGGGGAGGACGCCCACAAGCTCATCGATTTCC TGAAACTGAAGAGAAATCAGCAAGAGGATGACTGATGAGTGTGCTAGCGCGCAAGGCCGA GTTCCAGAGGAAACCACCGCTGCTGCTTCGGGAGGCCACGCAGAGTCCACAGCCTCCTAT TAACCCGGTTGGGGGTGGGGGGCGCGGCGGGAAATCAGTAGCTTTTTATATTCATGTATA AAGCGGGGGGGAGAAGGAGGGACTTTGCTACTTGTACAAATAACGTAATAAAGAGATCTT AAACATAGGAAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 120-320, gnl|bosTau2|chr13 (16526549-16526746) | |
| 120-320, gnl|Hg17|chr10 (28767369-28767998) | |
| 609-738, gnl|bosTau2|chr13 (5368452-5368581) | |
| 609-738, gnl|canFam2|chr2 (27038467-27038326) | |
| 609-738, gnl|dasNov1|scaffold_119468 (706-565) | |
| 609-738, gnl|echTel1|scaffold_187425 (10133-10274) | |
| 609-738, gnl|fr1|chrUn (340411050-340411192) | |
| 609-738, gnl|hg17|chr10 (12319147-12319289) | |
| 609-738, gnl|Hg17|chr10 (12319148-12319277) | |
| 609-738, gnl|loxAfr1|scaffold_33070 (4345-4205) | |
| 609-738, gnl|mm7|chr2 (5722310-5722169) | |
| 609-738, gnl|Mm7|chr2 (5722307-5722178) | |
| 609-738, gnl|monDom2|scaffold_30 (11080761-11080902) | |
| 609-738, gnl|oryCun1|scaffold_191593 (38828-38687) | |
| 609-738, gnl|panTro1|chr8 (12531558-12531700) | |
| 609-738, gnl|rheMac2|chr9 (12497406-12497548) | |
| 609-738, gnl|rn3|chr17 (83563327-83563468) | |
| 609-738, gnl|tetNig1|chrUn_random (54882407-54882546) | |
| 609-738, gnl|xenTro1|scaffold_200 (25964-26106) | |
| 761-891, gnl|bosTau2|chr13 (5376181-5376308) | |
| 761-891, gnl|canFam2|chr2 (27031187-27031050) | |
| 761-891, gnl|danRer3|chr4 (5060129-5060236) | |
| 761-891, gnl|echTel1|scaffold_288930 (47107-46988) | |
| 761-891, gnl|fr1|chrUn (346914728-346914817) | |
| 761-891, gnl|hg17|chr10 (12328149-12328286) | |
| 761-891, gnl|Hg17|chr10 (12328153-12328283) | |
| 761-891, gnl|loxAfr1|scaffold_83983 (7575-7438) | |
| 761-891, gnl|mm7|chr2 (5715769-5715634) | |
| 761-891, gnl|Mm7|chr2 (5715763-5715633) | |
| 761-891, gnl|monDom2|scaffold_30 (11104958-11105095) | |
| 761-891, gnl|oryCun1|scaffold_119917 (745-882) | |
| 761-891, gnl|panTro1|chr8 (12540271-12540408) | |
| 761-891, gnl|rheMac2|chr9 (12507134-12507271) | |
| 761-891, gnl|rn3|chr17 (83570733-83570870) | |
| 761-891, gnl|tetNig1|chrUn_random (54882710-54882794) | |
| 761-891, gnl|xenTro1|scaffold_200 (32051-32176) | |
| 1016-1265, gnl|bosTau2|chr13 (5342002-5342245) | |
| 1016-1265, gnl|Hg17|chr10 (12332303-12332548) | |
| 1016-1265, gnl|Mm7|chr2 (5712166-5711939) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-320, gnl|bosTau2|chr13 (16526549-16526746) | |
| 120-320, gnl|Hg17|chr10 (28767369-28767998) | |
| 609-738, gnl|bosTau2|chr13 (5368452-5368581) | |
| 609-738, gnl|canFam2|chr2 (27038467-27038326) | |
| 609-738, gnl|dasNov1|scaffold_119468 (706-565) | |
| 609-738, gnl|echTel1|scaffold_187425 (10133-10274) | |
| 609-738, gnl|fr1|chrUn (340411050-340411192) | |
| 609-738, gnl|hg17|chr10 (12319147-12319289) | |
| 609-738, gnl|Hg17|chr10 (12319148-12319277) | |
| 609-738, gnl|loxAfr1|scaffold_33070 (4345-4205) | |
| 609-738, gnl|mm7|chr2 (5722310-5722169) | |
| 609-738, gnl|Mm7|chr2 (5722307-5722178) | |
| 609-738, gnl|monDom2|scaffold_30 (11080761-11080902) | |
| 609-738, gnl|oryCun1|scaffold_191593 (38828-38687) | |
| 609-738, gnl|panTro1|chr8 (12531558-12531700) | |
| 609-738, gnl|rheMac2|chr9 (12497406-12497548) | |
| 609-738, gnl|rn3|chr17 (83563327-83563468) | |
| 609-738, gnl|tetNig1|chrUn_random (54882407-54882546) | |
| 609-738, gnl|xenTro1|scaffold_200 (25964-26106) | |
| 761-891, gnl|bosTau2|chr13 (5376181-5376308) | |
| 761-891, gnl|canFam2|chr2 (27031187-27031050) | |
| 761-891, gnl|danRer3|chr4 (5060129-5060236) | |
| 761-891, gnl|echTel1|scaffold_288930 (47107-46988) | |
| 761-891, gnl|fr1|chrUn (346914728-346914817) | |
| 761-891, gnl|hg17|chr10 (12328149-12328286) | |
| 761-891, gnl|Hg17|chr10 (12328153-12328283) | |
| 761-891, gnl|loxAfr1|scaffold_83983 (7575-7438) | |
| 761-891, gnl|mm7|chr2 (5715769-5715634) | |
| 761-891, gnl|Mm7|chr2 (5715763-5715633) | |
| 761-891, gnl|monDom2|scaffold_30 (11104958-11105095) | |
| 761-891, gnl|oryCun1|scaffold_119917 (745-882) | |
| 761-891, gnl|panTro1|chr8 (12540271-12540408) | |
| 761-891, gnl|rheMac2|chr9 (12507134-12507271) | |
| 761-891, gnl|rn3|chr17 (83570733-83570870) | |
| 761-891, gnl|tetNig1|chrUn_random (54882710-54882794) | |
| 761-891, gnl|xenTro1|scaffold_200 (32051-32176) | |
| 1016-1265, gnl|bosTau2|chr13 (5342002-5342245) | |
| 1016-1265, gnl|Hg17|chr10 (12332303-12332548) | |
| 1016-1265, gnl|Mm7|chr2 (5712166-5711939) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| sto (0.899119) | |
| fli (0.405762) | |
| eep (0.367692) | |
| cut (0.339847) | |
| lin (0.291206) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.899119) | |
| fli (0.405762) | |
| eep (0.367692) | |
| cut (0.339847) | |
| lin (0.291206) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |