Non-Coding RNA Search

Ss1.1-Pig4-TMW8059A10.3

Sequence:


               
               GGATTCTGGCTGATACGTCGGTGGTCTCGCAAGTGTAAGTGTCAGCCCCCCTCCCCCCCC
CTTGATGGTTAAATTGTGGTGGGCGATAGAAGCTCCTGCCTGGACCACAGCTACACATCA
CCTGGAGGAAACGCACGGCAGGTCTAAGGGAAGGCCAAACGCAGTCCCCAGAGAAAGTCC
TGAGGCTCCGTTTCAGATAAAGCCTTTTCTCCAACGAACCATGAGTGAAGATGGATCCAT
TTGCTGCTTCCACCCTCGCCCGGAGGTTTGGGTTACACACCTCGGCTGAAGGGGCGTTGA
CTGTTGGGCAGAGTGTGCTTTTTCTGTGACTCGCGTCTCATGACGTTTCTCGGGATGTTG
GGTCACGTGTGCTCACAGCATCTCTGCTGTAGTTGGAATTGCCCATGTTTATGTCGGTCA
CTTTAATTTTCTTTAAAAAGATACTATTCGTGTTAAGAACCAGCTGAAGCCGTTATTAAT
ACTGTACAAAGAATCCAGGCAGTATTTCTCGTTCCTGTCACCCCGTGTCCAAGCTTGGGG
GAGCGCTTCGGAGCTTGTCGCCGGCACCTGCGGGTTGAGTTGAGGCTCCCACACGGCGCG
ATCGGAAGAGTGAGGCTGGGGCTCCTCTCTCCATGGGCTGTTTGTAAAGCCGTAAGCAGA
AATGTTGGGGACTCCGTGTTATAACTCCGTGAGTGAGCTGTGGTGTGGGTAGGGTTTCCT
ACTTCTCTGTACTTTTATCTGTAGACTGTTTTACTACGGTGCTTTATAATGTGTTTTAAA
GCATTGCATTTACAGAAAAAGAAAAATGCTGTAAATATTGCATATTTTATGTATTTGGAC
CAAAAGGCTAGAAGTAATGAGGACAAAAGTGATTTTGCACCAATTTTATGATGTCCAGTA
AAACCATCAGACCTATCGTCCCTGTGTTTCTCCTTGAACTTGACTGTTAAGATGTCACTG
AAATGGAACTCGGTAACCTTGCAGGTTTGACACGCAGTTATTCCTCAGTGGGGGCAGTGG
TTACAGTGGAAAGACGACCGGACAAGGAGTCAGAGCTCATGGTTTCGTGTCCTGCCTCTG
CCACATACGTGCTGTGTGACCTTGGGCAAGTCGCTTAACCTCTCTCTGCCTCAGTTTCCT
CAGCTTGGTGAGGACGGTCATTCTGCTGTACCTGCCTCCCCGGGGAGCTGTGGGGCTTGA
AGGAGGTGACCTGTGCGGGCACCTGGAAACCCCGTAACGAGCTGCGGAAACATCAGCTCT
TAGAAACCATGGGTGACGTATAGTTTCATGCCATTCGTTTTTTAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTCTGGCTGATACGTCGGTGGTCTCGCAAGTGTAAGTGTCAGCCCCCCTCCCCCCCC
CTTGATGGTTAAATTGTGGTGGGCGATAGAAGCTCCTGCCTGGACCACAGCTACACATCA
CCTGGAGGAAACGCACGGCAGGTCTAAGGGAAGGCCAAACGCAGTCCCCAGAGAAAGTCC
TGAGGCTCCGTTTCAGATAAAGCCTTTTCTCCAACGAACCATGAGTGAAGATGGATCCAT
TTGCTGCTTCCACCCTCGCCCGGAGGTTTGGGTTACACACCTCGGCTGAAGGGGCGTTGA
CTGTTGGGCAGAGTGTGCTTTTTCTGTGACTCGCGTCTCATGACGTTTCTCGGGATGTTG
GGTCACGTGTGCTCACAGCATCTCTGCTGTAGTTGGAATTGCCCATGTTTATGTCGGTCA
CTTTAATTTTCTTTAAAAAGATACTATTCGTGTTAAGAACCAGCTGAAGCCGTTATTAAT
ACTGTACAAAGAATCCAGGCAGTATTTCTCGTTCCTGTCACCCCGTGTCCAAGCTTGGGG
GAGCGCTTCGGAGCTTGTCGCCGGCACCTGCGGGTTGAGTTGAGGCTCCCACACGGCGCG
ATCGGAAGAGTGAGGCTGGGGCTCCTCTCTCCATGGGCTGTTTGTAAAGCCGTAAGCAGA
AATGTTGGGGACTCCGTGTTATAACTCCGTGAGTGAGCTGTGGTGTGGGTAGGGTTTCCT
ACTTCTCTGTACTTTTATCTGTAGACTGTTTTACTACGGTGCTTTATAATGTGTTTTAAA
GCATTGCATTTACAGAAAAAGAAAAATGCTGTAAATATTGCATATTTTATGTATTTGGAC
CAAAAGGCTAGAAGTAATGAGGACAAAAGTGATTTTGCACCAATTTTATGATGTCCAGTA
AAACCATCAGACCTATCGTCCCTGTGTTTCTCCTTGAACTTGACTGTTAAGATGTCACTG
AAATGGAACTCGGTAACCTTGCAGGTTTGACACGCAGTTATTCCTCAGTGGGGGCAGTGG
TTACAGTGGAAAGACGACCGGACAAGGAGTCAGAGCTCATGGTTTCGTGTCCTGCCTCTG
CCACATACGTGCTGTGTGACCTTGGGCAAGTCGCTTAACCTCTCTCTGCCTCAGTTTCCT
CAGCTTGGTGAGGACGGTCATTCTGCTGTACCTGCCTCCCCGGGGAGCTGTGGGGCTTGA
AGGAGGTGACCTGTGCGGGCACCTGGAAACCCCGTAACGAGCTGCGGAAACATCAGCTCT
TAGAAACCATGGGTGACGTATAGTTTCATGCCATTCGTTTTTTAACCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               654-800, - strand, RNAz p=0.858909
               

               
               1109-1223, - strand, RNAz p=0.634744

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               654-800, - strand, RNAz p=0.858909
               

               
               1109-1223, - strand, RNAz p=0.634744

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

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               2-321, gnl|bosTau2|chr3 (41794056-41793751)
               

               
               2-321, gnl|canFam2|chr6 (64187477-64186968)
               

               
               2-321, gnl|dasNov1|scaffold_2376 (128206-127757)
               

               
               2-321, gnl|echTel1|scaffold_292160 (40124-40588)
               

               
               2-321, gnl|galGal2|chr8 (16169312-16168843)
               

               
               2-321, gnl|hg17|chr1 (87282473-87282934)
               

               
               2-321, gnl|Hg17|chr1 (87282552-87282859)
               

               
               2-321, gnl|loxAfr1|scaffold_1204 (93292-92818)
               

               
               2-321, gnl|mm7|chr3 (144327483-144327035)
               

               
               2-321, gnl|Mm7|chr3 (144327416-144327107)
               

               
               2-321, gnl|monDom2|scaffold_123 (1004027-1004479)
               

               
               2-321, gnl|panTro1|chr1 (85942478-85942941)
               

               
               2-321, gnl|rheMac2|chr1 (89805381-89805847)
               

               
               2-321, gnl|rn3|chr2 (242611713-242611213)
               


               
               355-558, gnl|bosTau2|chr3 (41793742-41793542)
               

               
               355-558, gnl|Hg17|chr1 (87282895-87283101)
               

               
               355-558, gnl|Mm7|chr3 (144327071-144326862)
               


               
               575-1306, gnl|bosTau2|chr3 (41789313-41788569)
               

               
               575-1306, gnl|Hg17|chr1 (87283118-87283854)
               

               
               575-1306, gnl|Mm7|chr3 (144326838-144326114)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-321, gnl|bosTau2|chr3 (41794056-41793751)
               

               
               2-321, gnl|canFam2|chr6 (64187477-64186968)
               

               
               2-321, gnl|dasNov1|scaffold_2376 (128206-127757)
               

               
               2-321, gnl|echTel1|scaffold_292160 (40124-40588)
               

               
               2-321, gnl|galGal2|chr8 (16169312-16168843)
               

               
               2-321, gnl|hg17|chr1 (87282473-87282934)
               

               
               2-321, gnl|Hg17|chr1 (87282552-87282859)
               

               
               2-321, gnl|loxAfr1|scaffold_1204 (93292-92818)
               

               
               2-321, gnl|mm7|chr3 (144327483-144327035)
               

               
               2-321, gnl|Mm7|chr3 (144327416-144327107)
               

               
               2-321, gnl|monDom2|scaffold_123 (1004027-1004479)
               

               
               2-321, gnl|panTro1|chr1 (85942478-85942941)
               

               
               2-321, gnl|rheMac2|chr1 (89805381-89805847)
               

               
               2-321, gnl|rn3|chr2 (242611713-242611213)
               


               
               355-558, gnl|bosTau2|chr3 (41793742-41793542)
               

               
               355-558, gnl|Hg17|chr1 (87282895-87283101)
               

               
               355-558, gnl|Mm7|chr3 (144327071-144326862)
               


               
               575-1306, gnl|bosTau2|chr3 (41789313-41788569)
               

               
               575-1306, gnl|Hg17|chr1 (87283118-87283854)
               

               
               575-1306, gnl|Mm7|chr3 (144326838-144326114)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               sto (0.179824)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

	654-800, - strand, RNAz p=0.858909
	1109-1223, - strand, RNAz p=0.634744

	2-321, gnl\|bosTau2\|chr3 (41794056-41793751)
	2-321, gnl\|canFam2\|chr6 (64187477-64186968)
	2-321, gnl\|dasNov1\|scaffold_2376 (128206-127757)
	2-321, gnl\|echTel1\|scaffold_292160 (40124-40588)
	2-321, gnl\|galGal2\|chr8 (16169312-16168843)
	2-321, gnl\|hg17\|chr1 (87282473-87282934)
	2-321, gnl\|Hg17\|chr1 (87282552-87282859)
	2-321, gnl\|loxAfr1\|scaffold_1204 (93292-92818)
	2-321, gnl\|mm7\|chr3 (144327483-144327035)
	2-321, gnl\|Mm7\|chr3 (144327416-144327107)
	2-321, gnl\|monDom2\|scaffold_123 (1004027-1004479)
	2-321, gnl\|panTro1\|chr1 (85942478-85942941)
	2-321, gnl\|rheMac2\|chr1 (89805381-89805847)
	2-321, gnl\|rn3\|chr2 (242611713-242611213)

	355-558, gnl\|bosTau2\|chr3 (41793742-41793542)
	355-558, gnl\|Hg17\|chr1 (87282895-87283101)
	355-558, gnl\|Mm7\|chr3 (144327071-144326862)

	575-1306, gnl\|bosTau2\|chr3 (41789313-41788569)
	575-1306, gnl\|Hg17\|chr1 (87283118-87283854)
	575-1306, gnl\|Mm7\|chr3 (144326838-144326114)

	sto (0.179824)
	hyp (0.142837)
	pty (0.142714)
	ute (0.132784)
	eje (0.0988338)