Non-Coding RNA Search

Ss1.1-Pig4-TMW8059A12.3

Sequence:


               
               AGTGCAAGTAGGAGCGGCACAGGCAGAGAACCACGTCAGTGGCTGGCCGCCAGCAGCGCG
GGCCTCGGACTCTTGGCTTATTGGCAGTGGAAGATGGAAGGGACACCTCAGTTCTCACAC
GGTCTCCATCTGTGGGGAGTGACGGAAGAGGAGGAAGACTTAAGCAGGCCTTGTGACCGG
TGCCATGCTTGATGGCGCGGAGGCCCAGGCCCTACCTGCAGACCAGCTCTAAAGTAGAAG
CCGGATTCACCAGGAGATGCCCAGCCAACTTGGCCACGAGCTCATTTCCCTTGACGGTGA
AGCAAGAAACACGAAGCCTCTGGCTAAGAATTCTTGATGTCCAGAGGATCAGCTATCTAG
CATCTTCCCCTCAGACCCAAGCCTCTTAAACCAGTGGGAGTGTGTGGAGGAGGGGCCCTG
AGCACGCACACTCCCCACCCACCCAGGACTGGGTGCGAGGGGCCAGCCTCCCACCCTCTC
CCATCAGTTGTGTCATGAGAAGGCTCAGGCCAGGTGCTGGTACTGCTCACTCTTTAAAAA
TGGAAAAACAGCCTTTTTGATTTGCAAAGTTAAACAGGGTTTTCATTTTTACTCCAAATG
GTTTAGTTTTAGAAAAAAAGAATACTGATCCAGGCTGATCCCCAGTGAGATAATTTGAAA
CCTGATTCCTCTGAGACATGCCGGTCCTTAGTTCAGTTGTTTTAGCTGTTTTGAGTTTTC
GTTTTTTGAATGTTAGCCATTTGCTGTTACCCACAGAAACAAAAGGTTCTAAGGAAACAG
AGCTGAGGCATCTTCGGGTGTCCAAACGAGGACGCTCTTGGAGAACCTGTACCCTTAGTG
TCTCTACTTGCGTTTTTCACTTAGAGGAACCCCCACACCAGCACTCACGTGCGACGGCCC
ATTCGCATCCAGAGTGTGGAGAGCCACCACCGGCCCTGCCTCCTGCTCTTGTCACTTCCT
TTGCCTGCCCCCAGCCACTCCCACAGGGAGGTGAGGCTGGACGGAGCCACCTTTGCCGGG
AGCCGCTGGGTGACCACCCAGGATCGGCCGCACTTGGCATCCGCGGGCAGCTTGGTGCGG
TGCCGTTTACTTGTACAGAAACATTTTTGAAAAATTCTTTTCAATAAGATGCAAAATCCT
CTCCAACTTTTCAACCTGATGTGATAAAATATTTGATTTTGTTCTAGATTTCCTGTAGCT
GTGAATTGTTCAAACATGTCTGATTCAGGATAAAATGTTAAACACGTGTTGTTAATTTCT
TGTGGATTTTACTGTTTTGCCTTCGAATAAAGACCTTTTTTTAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCAAGTAGGAGCGGCACAGGCAGAGAACCACGTCAGTGGCTGGCCGCCAGCAGCGCG
GGCCTCGGACTCTTGGCTTATTGGCAGTGGAAGATGGAAGGGACACCTCAGTTCTCACAC
GGTCTCCATCTGTGGGGAGTGACGGAAGAGGAGGAAGACTTAAGCAGGCCTTGTGACCGG
TGCCATGCTTGATGGCGCGGAGGCCCAGGCCCTACCTGCAGACCAGCTCTAAAGTAGAAG
CCGGATTCACCAGGAGATGCCCAGCCAACTTGGCCACGAGCTCATTTCCCTTGACGGTGA
AGCAAGAAACACGAAGCCTCTGGCTAAGAATTCTTGATGTCCAGAGGATCAGCTATCTAG
CATCTTCCCCTCAGACCCAAGCCTCTTAAACCAGTGGGAGTGTGTGGAGGAGGGGCCCTG
AGCACGCACACTCCCCACCCACCCAGGACTGGGTGCGAGGGGCCAGCCTCCCACCCTCTC
CCATCAGTTGTGTCATGAGAAGGCTCAGGCCAGGTGCTGGTACTGCTCACTCTTTAAAAA
TGGAAAAACAGCCTTTTTGATTTGCAAAGTTAAACAGGGTTTTCATTTTTACTCCAAATG
GTTTAGTTTTAGAAAAAAAGAATACTGATCCAGGCTGATCCCCAGTGAGATAATTTGAAA
CCTGATTCCTCTGAGACATGCCGGTCCTTAGTTCAGTTGTTTTAGCTGTTTTGAGTTTTC
GTTTTTTGAATGTTAGCCATTTGCTGTTACCCACAGAAACAAAAGGTTCTAAGGAAACAG
AGCTGAGGCATCTTCGGGTGTCCAAACGAGGACGCTCTTGGAGAACCTGTACCCTTAGTG
TCTCTACTTGCGTTTTTCACTTAGAGGAACCCCCACACCAGCACTCACGTGCGACGGCCC
ATTCGCATCCAGAGTGTGGAGAGCCACCACCGGCCCTGCCTCCTGCTCTTGTCACTTCCT
TTGCCTGCCCCCAGCCACTCCCACAGGGAGGTGAGGCTGGACGGAGCCACCTTTGCCGGG
AGCCGCTGGGTGACCACCCAGGATCGGCCGCACTTGGCATCCGCGGGCAGCTTGGTGCGG
TGCCGTTTACTTGTACAGAAACATTTTTGAAAAATTCTTTTCAATAAGATGCAAAATCCT
CTCCAACTTTTCAACCTGATGTGATAAAATATTTGATTTTGTTCTAGATTTCCTGTAGCT
GTGAATTGTTCAAACATGTCTGATTCAGGATAAAATGTTAAACACGTGTTGTTAATTTCT
TGTGGATTTTACTGTTTTGCCTTCGAATAAAGACCTTTTTTTAAAGAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               72-429, gnl|bosTau2|chr7 (5752681-5752336)
               

               
               72-429, gnl|Hg17|chr19 (16490945-16490530)
               


               
               506-1307, gnl|bosTau2|chr7 (5752333-5751524)
               

               
               506-1307, gnl|Hg17|chr19 (16490525-16489705)
               

               
               506-1307, gnl|Mm7|chr8 (70984034-70983363)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-429, gnl|bosTau2|chr7 (5752681-5752336)
               

               
               72-429, gnl|Hg17|chr19 (16490945-16490530)
               


               
               506-1307, gnl|bosTau2|chr7 (5752333-5751524)
               

               
               506-1307, gnl|Hg17|chr19 (16490525-16489705)
               

               
               506-1307, gnl|Mm7|chr8 (70984034-70983363)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	72-429, gnl\|bosTau2\|chr7 (5752681-5752336)
	72-429, gnl\|Hg17\|chr19 (16490945-16490530)

	506-1307, gnl\|bosTau2\|chr7 (5752333-5751524)
	506-1307, gnl\|Hg17\|chr19 (16490525-16489705)
	506-1307, gnl\|Mm7\|chr8 (70984034-70983363)

	cga (0.279096)
	ece (0.229305)
	fcc (0.197785)
	gul (0.177588)
	ill (0.175593)
	nje (0.16592)
	csp (0.161186)
	pla (0.133672)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)