Non-Coding RNA Search

Ss1.1-Pig4-TMW8059A19.3

Sequence:


               
               AAAAAACATTTAAATTAAAAGCCTATATTTGTAGGTCTTCTATAGAATTGCTTATTAATA
GTTTGTTCTTAGAGCAAGAGTTTTTTAGTTGGGATTAATTTATTTTCCTCCTATATATGT
ATTTTTTTCTTATATTTCCAAATCTATTGCTGAGAATGTGTCAAGATCAATGATGAATAT
TTACAGCTTGCAGGAACCTGCATTCAACCTCCCAACCCCACGAGAAAAATGCTTAAGAAT
TAAAATTCTTAAAGTAGCTCACTGGGTTACTTCTAGCAGTAGCATAATGCTACTCATGTG
GATATTACCTCATTTTAAGCAAAGTATAACATGTAAAACCAGTCCCAGCTCTCAGAATGA
CTTCTGTGAGGTTATTTTACAAGCAATTCAAGTTACTGGAAACCTTTAAAACTTTCTTAG
ATGTATTAAGATAAATTGCTTTTCTAGGATTTTTAAATAAAAGCTGCACAGGTGGCAAGT
TGAAGTTTTATAGGTCTGTAGGGTGATGAATCTTCTGGAGGAATATGTGAATTATTCACA
GTTCTTCAAGGCCTGGGGATAACTATTAATTATACCTATTTTTGTGCAATTACATCATAT
TGTACATTAGAAATTGAGAGTTTAATAGCCTTTTATTTCCCTTAAAGGACTGGAGATTTT
TCTGTTTGAACCATAACGGGAATTTATCTTGCCATGTCTTTTGTTATAACTCCCTATACA
AGTGGCTAAGCTAGAATATATTCGTGGTGAGTTATATATGTAGGTGAGTACATACATGTA
GGTGAGTTATACAAGTTGGAATGTTGACAAGACCCTATACTTAGCTTTAGTGATTTTCAA
AATTAATAGGCACTGTAAAATAGATTTTATTAGTCTCTTAAAAGATCTTAGTCATATGCA
ATAAGTATTTTTATTACCAACAAATTTGAAGGTTTTTTAAGAAAAAAATACTTTTATCCT
AGGACCTGCCACCAGATAGTCACTAAGTTGTTCTTTCAACCTTACCTGTTTTCCTGCCTA
ATAGCAGTCATTCCTGACATTCTGTTGGCTAGAAAGTCACAGTTTCAAAAAAAAAGGAAA
TTGTTTCTCTTTGCTTTTGCACAATCTATTCTTTTATGGCCTCTTATCGCAAGGTATAAT
GTTTTACCAGAGATTGAAGGAAGAGCCAAAATATCTCAGTTGGGAGAGCATTAACTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAACATTTAAATTAAAAGCCTATATTTGTAGGTCTTCTATAGAATTGCTTATTAATA
GTTTGTTCTTAGAGCAAGAGTTTTTTAGTTGGGATTAATTTATTTTCCTCCTATATATGT
ATTTTTTTCTTATATTTCCAAATCTATTGCTGAGAATGTGTCAAGATCAATGATGAATAT
TTACAGCTTGCAGGAACCTGCATTCAACCTCCCAACCCCACGAGAAAAATGCTTAAGAAT
TAAAATTCTTAAAGTAGCTCACTGGGTTACTTCTAGCAGTAGCATAATGCTACTCATGTG
GATATTACCTCATTTTAAGCAAAGTATAACATGTAAAACCAGTCCCAGCTCTCAGAATGA
CTTCTGTGAGGTTATTTTACAAGCAATTCAAGTTACTGGAAACCTTTAAAACTTTCTTAG
ATGTATTAAGATAAATTGCTTTTCTAGGATTTTTAAATAAAAGCTGCACAGGTGGCAAGT
TGAAGTTTTATAGGTCTGTAGGGTGATGAATCTTCTGGAGGAATATGTGAATTATTCACA
GTTCTTCAAGGCCTGGGGATAACTATTAATTATACCTATTTTTGTGCAATTACATCATAT
TGTACATTAGAAATTGAGAGTTTAATAGCCTTTTATTTCCCTTAAAGGACTGGAGATTTT
TCTGTTTGAACCATAACGGGAATTTATCTTGCCATGTCTTTTGTTATAACTCCCTATACA
AGTGGCTAAGCTAGAATATATTCGTGGTGAGTTATATATGTAGGTGAGTACATACATGTA
GGTGAGTTATACAAGTTGGAATGTTGACAAGACCCTATACTTAGCTTTAGTGATTTTCAA
AATTAATAGGCACTGTAAAATAGATTTTATTAGTCTCTTAAAAGATCTTAGTCATATGCA
ATAAGTATTTTTATTACCAACAAATTTGAAGGTTTTTTAAGAAAAAAATACTTTTATCCT
AGGACCTGCCACCAGATAGTCACTAAGTTGTTCTTTCAACCTTACCTGTTTTCCTGCCTA
ATAGCAGTCATTCCTGACATTCTGTTGGCTAGAAAGTCACAGTTTCAAAAAAAAAGGAAA
TTGTTTCTCTTTGCTTTTGCACAATCTATTCTTTTATGGCCTCTTATCGCAAGGTATAAT
GTTTTACCAGAGATTGAAGGAAGAGCCAAAATATCTCAGTTGGGAGAGCATTAACTGGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               480-635, - strand, RNAz p=0.79453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-635, - strand, RNAz p=0.79453

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-635, gnl|bosTau2|chr2 (5110868-5111486)
               

               
               1-635, gnl|canFam2|chr36 (31917617-31918052)
               

               
               1-635, gnl|dasNov1|scaffold_145727 (42472-42048)
               

               
               1-635, gnl|echTel1|scaffold_319278 (113947-113547)
               

               
               1-635, gnl|hg17|chr2 (187368391-187368816)
               

               
               1-635, gnl|Hg17|chr2 (187368386-187369019)
               

               
               1-635, gnl|mm7|chr2 (83647973-83648358)
               

               
               1-635, gnl|Mm7|chr2 (83647967-83648533)
               

               
               1-635, gnl|monDom2|scaffold_2 (91225001-91225471)
               

               
               1-635, gnl|panTro1|chr13 (77202088-77202512)
               

               
               1-635, gnl|rheMac2|chr12 (50292281-50292705)
               

               
               1-635, gnl|rn3|chr3 (66926579-66926967)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr2 (5110868-5111486)
               

               
               1-635, gnl|canFam2|chr36 (31917617-31918052)
               

               
               1-635, gnl|dasNov1|scaffold_145727 (42472-42048)
               

               
               1-635, gnl|echTel1|scaffold_319278 (113947-113547)
               

               
               1-635, gnl|hg17|chr2 (187368391-187368816)
               

               
               1-635, gnl|Hg17|chr2 (187368386-187369019)
               

               
               1-635, gnl|mm7|chr2 (83647973-83648358)
               

               
               1-635, gnl|Mm7|chr2 (83647967-83648533)
               

               
               1-635, gnl|monDom2|scaffold_2 (91225001-91225471)
               

               
               1-635, gnl|panTro1|chr13 (77202088-77202512)
               

               
               1-635, gnl|rheMac2|chr12 (50292281-50292705)
               

               
               1-635, gnl|rn3|chr3 (66926579-66926967)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

	1-635, gnl\|bosTau2\|chr2 (5110868-5111486)
	1-635, gnl\|canFam2\|chr36 (31917617-31918052)
	1-635, gnl\|dasNov1\|scaffold_145727 (42472-42048)
	1-635, gnl\|echTel1\|scaffold_319278 (113947-113547)
	1-635, gnl\|hg17\|chr2 (187368391-187368816)
	1-635, gnl\|Hg17\|chr2 (187368386-187369019)
	1-635, gnl\|mm7\|chr2 (83647973-83648358)
	1-635, gnl\|Mm7\|chr2 (83647967-83648533)
	1-635, gnl\|monDom2\|scaffold_2 (91225001-91225471)
	1-635, gnl\|panTro1\|chr13 (77202088-77202512)
	1-635, gnl\|rheMac2\|chr12 (50292281-50292705)
	1-635, gnl\|rn3\|chr3 (66926579-66926967)

	ldo (0.194005)
	sin (0.174948)
	rec (0.17307)
	fco (0.157208)
	isp (0.150376)
	ski (0.146735)
	hyp (0.142837)
	pla (0.133672)