Ss1.1-Pig4-TMW8059A23.3
|
GGGAGGCAGTGGTAAAGGGAGGTGGCGGCAGCGGCTAGCGGACTCGAGTCACAACCAGGC
CGAGGCAGACACCTCTGTGAAGCGAGGCAGTAGGAGCACCGAGCACCGGAGGCGGCACCG
GGATCCCCGGCTCGGGGGAGGGGGGCGCCGGACCGGGAGGAGGGGAGGGGGCGATGCTGG
AAGCCATGGCGGAGCCCAGTCCCGAAGATCCACCTCCGACCCTTAAGCCGGAGACTCAGC
CACCAGAGAAACGTCGGAGAACAATTGAGGATTTCAACAAATTCTGCAGTTTTGTCTTGG
CTTATGCTGGTTACATCCCCCCAAGCAAAGAGGAAAGCGACTGGCCAGCCTCTGGCTCCA
GCTCTCCATTGCGAGGCGAGAGTGCGGCAGACAGCGATGGCTGGGACTCAGCTCCCTCAG
ATCTCAGAACCATCCAGACCTTTGTTAAGAAAGCAAAGTCATCCAAGAGAAGGGCGGCTC
AAGCAGGTCCCACCCAGACCGGACCCCCAAGGTCCGCTTTCCCTCGTCTGCAGGCCCCTG
ACAGTGCCACCCTGCTTGAGAAGATGAAACTCAAGGATTCGCTCTTTGATCTAGATGGGC
CCAAAATGGCATCTCCACTGTCCCCCACATCCCTGACACATGCCCCTCGGCCCCCTGCTG
CTCTCACCCCGGTGCCCCTTTCCCAGGGGGACCTCTCCCAGCCTTCTCGAAAGAAGGACC
GAAAGAACCGAAAGTTGGGGCCAGGAGGCGGGGCGGGCTTTGGGGTGCTTCGGAGGCCTC
GGCCAGCCCCTGGGGATGGGGAGAAGAGGTCTCGAATCAAGAAGAGCAAGAAGCGGAAGT
TGAAAAAGGCAGAGCGGGGAGATAGACTCCCACCTCCTGGGCCTCCCCGGGCACCTCCCA
GTGATACAGACTCTGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGATGG
GAGCAATGGTAGTGGGGGAAGCCCCAGCCCCTGTGCTGCCAGCACCTCCTGAGGCTCCTA
GGCCCCCTGCGCCAGTGCACCCGGAAGGAGCCCCTCCCGCTGACAGTGAAAGCAAGGAGG
TGGGCAGCACTGAGACAAGCCAAGATGGAGATGCCAGCTCCAGCGAAGGCGAGATGCGGG
TCATGGATGAGGACATCATGGTAGAATCAGGTGATGACTCATGGGATCTGATTACGTGTT
ACTGCCGAAAGCCCTTTGCGGGCCGGCCCATGATTGAGTGCAGCCTGTGTGGGACGTGGA
TCCACCTCTCCTGTGCGAAGATTAAGAAGACCAATGTCCCTGACTTCTTTTATTGCCAGA
AATGCAAGGAACTGCGGCCAGAGGCCCGGCGGTTAGGGGGGCCTCCGAAGTCTGGAGAGC
CCTGACATTTGCCATGTCTAGGCTGGAACTTCAAATGGCAACATGACTGGGAAACTGAGC
CTCAGGGTCCTTGAGATATCCCCTGGAGCTTGGATGTCCCATTTCAAAGCCGAAATTTCC
AAGGGAGACTGGTTTGGAAATGAGTCATGTTCCTGTCCTACCCTTCCTTCCCACGTTGTG
GACTTGAACTTAGACCCATTGCAGTTGGTGGGAAGCTGGCTGGGTCCCTAGACACTTAAG
TTCTGTCCCTTGGACCTGCCTGTGACCGATCACTTTCTGGGCAGGGTTGGAATTGGGATG
GAATGGGACAGTTGTCTATAAAACTCTAGTGTAAATACAGCATTCCCCTCCCTCATCTTT
CTCACTCCCCATTTATTCTACACCGGTTGTGTTTTTAATTTTGGACTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGAGGCAGTGGTAAAGGGAGGTGGCGGCAGCGGCTAGCGGACTCGAGTCACAACCAGGC
CGAGGCAGACACCTCTGTGAAGCGAGGCAGTAGGAGCACCGAGCACCGGAGGCGGCACCG
GGATCCCCGGCTCGGGGGAGGGGGGCGCCGGACCGGGAGGAGGGGAGGGGGCGATGCTGG
AAGCCATGGCGGAGCCCAGTCCCGAAGATCCACCTCCGACCCTTAAGCCGGAGACTCAGC
CACCAGAGAAACGTCGGAGAACAATTGAGGATTTCAACAAATTCTGCAGTTTTGTCTTGG
CTTATGCTGGTTACATCCCCCCAAGCAAAGAGGAAAGCGACTGGCCAGCCTCTGGCTCCA
GCTCTCCATTGCGAGGCGAGAGTGCGGCAGACAGCGATGGCTGGGACTCAGCTCCCTCAG
ATCTCAGAACCATCCAGACCTTTGTTAAGAAAGCAAAGTCATCCAAGAGAAGGGCGGCTC
AAGCAGGTCCCACCCAGACCGGACCCCCAAGGTCCGCTTTCCCTCGTCTGCAGGCCCCTG
ACAGTGCCACCCTGCTTGAGAAGATGAAACTCAAGGATTCGCTCTTTGATCTAGATGGGC
CCAAAATGGCATCTCCACTGTCCCCCACATCCCTGACACATGCCCCTCGGCCCCCTGCTG
CTCTCACCCCGGTGCCCCTTTCCCAGGGGGACCTCTCCCAGCCTTCTCGAAAGAAGGACC
GAAAGAACCGAAAGTTGGGGCCAGGAGGCGGGGCGGGCTTTGGGGTGCTTCGGAGGCCTC
GGCCAGCCCCTGGGGATGGGGAGAAGAGGTCTCGAATCAAGAAGAGCAAGAAGCGGAAGT
TGAAAAAGGCAGAGCGGGGAGATAGACTCCCACCTCCTGGGCCTCCCCGGGCACCTCCCA
GTGATACAGACTCTGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGATGG
GAGCAATGGTAGTGGGGGAAGCCCCAGCCCCTGTGCTGCCAGCACCTCCTGAGGCTCCTA
GGCCCCCTGCGCCAGTGCACCCGGAAGGAGCCCCTCCCGCTGACAGTGAAAGCAAGGAGG
TGGGCAGCACTGAGACAAGCCAAGATGGAGATGCCAGCTCCAGCGAAGGCGAGATGCGGG
TCATGGATGAGGACATCATGGTAGAATCAGGTGATGACTCATGGGATCTGATTACGTGTT
ACTGCCGAAAGCCCTTTGCGGGCCGGCCCATGATTGAGTGCAGCCTGTGTGGGACGTGGA
TCCACCTCTCCTGTGCGAAGATTAAGAAGACCAATGTCCCTGACTTCTTTTATTGCCAGA
AATGCAAGGAACTGCGGCCAGAGGCCCGGCGGTTAGGGGGGCCTCCGAAGTCTGGAGAGC
CCTGACATTTGCCATGTCTAGGCTGGAACTTCAAATGGCAACATGACTGGGAAACTGAGC
CTCAGGGTCCTTGAGATATCCCCTGGAGCTTGGATGTCCCATTTCAAAGCCGAAATTTCC
AAGGGAGACTGGTTTGGAAATGAGTCATGTTCCTGTCCTACCCTTCCTTCCCACGTTGTG
GACTTGAACTTAGACCCATTGCAGTTGGTGGGAAGCTGGCTGGGTCCCTAGACACTTAAG
TTCTGTCCCTTGGACCTGCCTGTGACCGATCACTTTCTGGGCAGGGTTGGAATTGGGATG
GAATGGGACAGTTGTCTATAAAACTCTAGTGTAAATACAGCATTCCCCTCCCTCATCTTT
CTCACTCCCCATTTATTCTACACCGGTTGTGTTTTTAATTTTGGACTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-221, gnl|bosTau2|chr19 (20495669-20495449) |
|
1-221, gnl|canFam2|chr5 (35203331-35203685) |
|
1-221, gnl|hg17|chr17 (7083254-7083615) |
|
1-221, gnl|Hg17|chr17 (7083495-7083275) |
|
1-221, gnl|mm7|chr11 (70077655-70077327) |
|
1-221, gnl|Mm7|chr11 (70077429-70077641) |
|
1-221, gnl|monDom2|scaffold_66 (4124937-4125290) |
|
1-221, gnl|panTro1|chr19_random (44670006-44669651) |
|
1-221, gnl|rheMac2|chr16 (6968843-6969204) |
|
1-221, gnl|rn3|chr10 (56855456-56855133) |
|
1-221, gnl|xenTro1|scaffold_80 (1148176-1148533) |
| |
|
331-1174, gnl|bosTau2|chr19 (20493224-20492384) |
|
331-1174, gnl|Hg17|chr17 (7080812-7079969) |
|
331-1174, gnl|Mm7|chr11 (70079873-70080710) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-221, gnl|bosTau2|chr19 (20495669-20495449) |
|
1-221, gnl|canFam2|chr5 (35203331-35203685) |
|
1-221, gnl|hg17|chr17 (7083254-7083615) |
|
1-221, gnl|Hg17|chr17 (7083495-7083275) |
|
1-221, gnl|mm7|chr11 (70077655-70077327) |
|
1-221, gnl|Mm7|chr11 (70077429-70077641) |
|
1-221, gnl|monDom2|scaffold_66 (4124937-4125290) |
|
1-221, gnl|panTro1|chr19_random (44670006-44669651) |
|
1-221, gnl|rheMac2|chr16 (6968843-6969204) |
|
1-221, gnl|rn3|chr10 (56855456-56855133) |
|
1-221, gnl|xenTro1|scaffold_80 (1148176-1148533) |
| |
|
331-1174, gnl|bosTau2|chr19 (20493224-20492384) |
|
331-1174, gnl|Hg17|chr17 (7080812-7079969) |
|
331-1174, gnl|Mm7|chr11 (70079873-70080710) |
|
eru (0.240096) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eje (0.0988338) |
|
eru (0.240096) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eje (0.0988338) |
