Non-Coding RNA Search

Ss1.1-Pig4-TMW8059A24.5.5

Sequence:


               
               GACAGCCAGCCCTTCAGCCTCCAGGAGACGTATGAGGCCAAGAGGAAGGAGTTCCTGAGT
GAGCTGCAGAGGAAGGAGGAAGAGATGAGGCAGATGTTTGTCAACAAAGTGAAGGAGACG
GAGCTGGAGTTGAAGGAGAAGGAGAGAGAGCTCCACGAGAAGTTTGAGCACCTCAAGCGG
GTCCACCAGGAGGAAAAGCGCAAAGTGGAGGAGAAGCGCCGCGAACTGGAGGAGGAGACC
AGTGCCTTCAACCGCAGGAAGGCTGCAGTGGAGGCCCTGCAGTCCCAGGCCCTGCACGCC
ACCTCGCAGCAGCCTCTGAGGAAGGACAAGGACAAGAAGAATTAACGCACGCACAGACTT
ACATGTCAAGAGCGGACTTTAGACTTTCATGTGTTAAGTTGCTTGAGTTACACCTTGTGA
CCCTTCTCCCATAACTTGGTGTGAGGACGGACTGGGAGCCGGTACAGACTCCAGTGTTTA
CAGCCCTGCTTTGTCCCCCAGCCCTGTCCCCCCCGAGGCTGCCCGGGCCTTGGGGAGGGG
CCACCCTCTCTATGCAAATTCGTCAAAGCCATGAATGCTGGAATCCCAAACTGATGAGGT
TTATTTTTTTCAGAGCCAGTGGCTGGTCTTCCATTTACAGTGTCACTATCCCTTGATGGA
GCAGTTTTGTGCCGCTCCAGCGAAGGCCCCCGCCGGCGATGCTCGGCCTAGTTGTTCAGC
GTCAAGATGGCAACTCGCGCAGTGCCCTAGGCGAGGCCGGTATCAATGCTGCAGATCCGC
CCGATTCCCCTTCGTTTTAATTTTTCTAACCTAGAGCCTAATGATAATAATAACTTTTAA
AGCACTTCTAAATTTTTTATTTCGGCACCAGCATCAAGACAAATAATACCCTCTCCCATT
ATTTTCATAAGTAACACAGATACCCTGATTTTTAAAAACTAAAAACATCTCAGCCTTCCT
GATGTATAAAGTATCCCTATACAATACAGGGAGAGGTGGGTAATAAACATCCTGTCATGA
CAGTGTTTGGAATTTCTTTACGGATGGAAGCGGGTCACGCACCAGACCACAGCCCGTGTT
TTCACTGTGAATGTAAATGGAACAGCAGCCCGCAGCCGTTGTCCGTGTGCCCCAGCGGCG
CCACGTGTAAACAGGGACCAGCCCCACGTGTGTGTGTTCAGTGTGTGACTCCTGCTAAGA
CTCCCACCCCAACCCTGCAGATTCCGAATGCAAAGCGTGCTCAGAGGGAGAAGGTTTCTT
TTTTCCAGGTCATTGTTTGCTTTTTCCTGGCGGAGTCACAGGACGAAGAGACGAAGGTGT
CTGATGTTCGTGAACAATGTGAGAAAAAAACTGCCTGCAGAGGAGCTTTTCCCCTTTAGC
TGCCCTCTTAGGGAGCCCATCCCAGGTCCACACATGCTCCTCTGTTCCTGTTGGTTTGCA
AGCCACTGTCAGGGTTGAAAATACGCTCTGATAACATGGGATGCGAGAAATGCATGGCTA
AAGGGAGGATTTCACTGAATGCTGGTGAAGCACTGAGCTGGGCACAGGCTCCCCAGAGTG
ACACACAGCTCTAGCCTCAAGGAGCTCACAGTCTAGTGCCCTCCTGAGTTGGAAGCCTTA
GGAAGCTGCGCTCATGTATGGTCGGATCGGCAGTTTGTTTTTTGTGTCCTCCTTCTTTCC
TCCCACCGTGGCTTCCCTCTTTGTGCCTTGGCTTCCTGCTTTGCTGATGTCCAGGACTAG
GTCCTGGCTCCCCACTGCCATGCAGAGAAGGGTGGAGGGTGAGTTGTGTGTATCCACTGA
GGCACGGCCAGGAAAAGCAGGCCTTTTTCTCCTCACCAGGAGGGCAGGTTTTAGTGACGC
TCACGTTTTATCGCTGGCTCCAAGGATTCTGCCCTGACCAGGGGTGGATACAGATTTAGA
GGGGCTGGAAGCTTGAACTCTTTGAGAAGCCTTCTTCCAAAACATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCCAGCCCTTCAGCCTCCAGGAGACGTATGAGGCCAAGAGGAAGGAGTTCCTGAGT
GAGCTGCAGAGGAAGGAGGAAGAGATGAGGCAGATGTTTGTCAACAAAGTGAAGGAGACG
GAGCTGGAGTTGAAGGAGAAGGAGAGAGAGCTCCACGAGAAGTTTGAGCACCTCAAGCGG
GTCCACCAGGAGGAAAAGCGCAAAGTGGAGGAGAAGCGCCGCGAACTGGAGGAGGAGACC
AGTGCCTTCAACCGCAGGAAGGCTGCAGTGGAGGCCCTGCAGTCCCAGGCCCTGCACGCC
ACCTCGCAGCAGCCTCTGAGGAAGGACAAGGACAAGAAGAATTAACGCACGCACAGACTT
ACATGTCAAGAGCGGACTTTAGACTTTCATGTGTTAAGTTGCTTGAGTTACACCTTGTGA
CCCTTCTCCCATAACTTGGTGTGAGGACGGACTGGGAGCCGGTACAGACTCCAGTGTTTA
CAGCCCTGCTTTGTCCCCCAGCCCTGTCCCCCCCGAGGCTGCCCGGGCCTTGGGGAGGGG
CCACCCTCTCTATGCAAATTCGTCAAAGCCATGAATGCTGGAATCCCAAACTGATGAGGT
TTATTTTTTTCAGAGCCAGTGGCTGGTCTTCCATTTACAGTGTCACTATCCCTTGATGGA
GCAGTTTTGTGCCGCTCCAGCGAAGGCCCCCGCCGGCGATGCTCGGCCTAGTTGTTCAGC
GTCAAGATGGCAACTCGCGCAGTGCCCTAGGCGAGGCCGGTATCAATGCTGCAGATCCGC
CCGATTCCCCTTCGTTTTAATTTTTCTAACCTAGAGCCTAATGATAATAATAACTTTTAA
AGCACTTCTAAATTTTTTATTTCGGCACCAGCATCAAGACAAATAATACCCTCTCCCATT
ATTTTCATAAGTAACACAGATACCCTGATTTTTAAAAACTAAAAACATCTCAGCCTTCCT
GATGTATAAAGTATCCCTATACAATACAGGGAGAGGTGGGTAATAAACATCCTGTCATGA
CAGTGTTTGGAATTTCTTTACGGATGGAAGCGGGTCACGCACCAGACCACAGCCCGTGTT
TTCACTGTGAATGTAAATGGAACAGCAGCCCGCAGCCGTTGTCCGTGTGCCCCAGCGGCG
CCACGTGTAAACAGGGACCAGCCCCACGTGTGTGTGTTCAGTGTGTGACTCCTGCTAAGA
CTCCCACCCCAACCCTGCAGATTCCGAATGCAAAGCGTGCTCAGAGGGAGAAGGTTTCTT
TTTTCCAGGTCATTGTTTGCTTTTTCCTGGCGGAGTCACAGGACGAAGAGACGAAGGTGT
CTGATGTTCGTGAACAATGTGAGAAAAAAACTGCCTGCAGAGGAGCTTTTCCCCTTTAGC
TGCCCTCTTAGGGAGCCCATCCCAGGTCCACACATGCTCCTCTGTTCCTGTTGGTTTGCA
AGCCACTGTCAGGGTTGAAAATACGCTCTGATAACATGGGATGCGAGAAATGCATGGCTA
AAGGGAGGATTTCACTGAATGCTGGTGAAGCACTGAGCTGGGCACAGGCTCCCCAGAGTG
ACACACAGCTCTAGCCTCAAGGAGCTCACAGTCTAGTGCCCTCCTGAGTTGGAAGCCTTA
GGAAGCTGCGCTCATGTATGGTCGGATCGGCAGTTTGTTTTTTGTGTCCTCCTTCTTTCC
TCCCACCGTGGCTTCCCTCTTTGTGCCTTGGCTTCCTGCTTTGCTGATGTCCAGGACTAG
GTCCTGGCTCCCCACTGCCATGCAGAGAAGGGTGGAGGGTGAGTTGTGTGTATCCACTGA
GGCACGGCCAGGAAAAGCAGGCCTTTTTCTCCTCACCAGGAGGGCAGGTTTTAGTGACGC
TCACGTTTTATCGCTGGCTCCAAGGATTCTGCCCTGACCAGGGGTGGATACAGATTTAGA
GGGGCTGGAAGCTTGAACTCTTTGAGAAGCCTTCTTCCAAAACATACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               15-133, + strand, RNAz p=0.822689

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-133, + strand, RNAz p=0.822689

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               15-150, gnl|bosTau2|chr7 (17313008-17313143)
               

               
               15-150, gnl|canFam2|chr11 (24068193-24068279)
               

               
               15-150, gnl|danRer3|chr21 (39522571-39522657)
               

               
               15-150, gnl|dasNov1|scaffold_84026 (38512-38426)
               

               
               15-150, gnl|echTel1|scaffold_23750 (1886-1800)
               

               
               15-150, gnl|fr1|chrUn (29046583-29046498)
               

               
               15-150, gnl|galGal2|chr13 (16018853-16018939)
               

               
               15-150, gnl|hg17|chr5 (132124722-132124808)
               

               
               15-150, gnl|Hg17|chr5 (132124859-132124724)
               

               
               15-150, gnl|loxAfr1|scaffold_18767 (28907-28821)
               

               
               15-150, gnl|mm7|chr11 (53494380-53494294)
               

               
               15-150, gnl|Mm7|chr11 (53494241-53494376)
               

               
               15-150, gnl|monDom2|scaffold_6 (92566309-92566223)
               

               
               15-150, gnl|oryCun1|scaffold_196964 (1917-1831)
               

               
               15-150, gnl|panTro1|chr4 (138461454-138461540)
               

               
               15-150, gnl|rheMac2|chr6 (129168209-129168295)
               

               
               15-150, gnl|rn3|chr10 (39010562-39010476)
               

               
               15-150, gnl|tetNig1|chr7 (8927481-8927566)
               

               
               15-150, gnl|xenTro1|scaffold_473 (648482-648568)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-150, gnl|bosTau2|chr7 (17313008-17313143)
               

               
               15-150, gnl|canFam2|chr11 (24068193-24068279)
               

               
               15-150, gnl|danRer3|chr21 (39522571-39522657)
               

               
               15-150, gnl|dasNov1|scaffold_84026 (38512-38426)
               

               
               15-150, gnl|echTel1|scaffold_23750 (1886-1800)
               

               
               15-150, gnl|fr1|chrUn (29046583-29046498)
               

               
               15-150, gnl|galGal2|chr13 (16018853-16018939)
               

               
               15-150, gnl|hg17|chr5 (132124722-132124808)
               

               
               15-150, gnl|Hg17|chr5 (132124859-132124724)
               

               
               15-150, gnl|loxAfr1|scaffold_18767 (28907-28821)
               

               
               15-150, gnl|mm7|chr11 (53494380-53494294)
               

               
               15-150, gnl|Mm7|chr11 (53494241-53494376)
               

               
               15-150, gnl|monDom2|scaffold_6 (92566309-92566223)
               

               
               15-150, gnl|oryCun1|scaffold_196964 (1917-1831)
               

               
               15-150, gnl|panTro1|chr4 (138461454-138461540)
               

               
               15-150, gnl|rheMac2|chr6 (129168209-129168295)
               

               
               15-150, gnl|rn3|chr10 (39010562-39010476)
               

               
               15-150, gnl|tetNig1|chr7 (8927481-8927566)
               

               
               15-150, gnl|xenTro1|scaffold_473 (648482-648568)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               eye (0.341006)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	15-150, gnl\|bosTau2\|chr7 (17313008-17313143)
	15-150, gnl\|canFam2\|chr11 (24068193-24068279)
	15-150, gnl\|danRer3\|chr21 (39522571-39522657)
	15-150, gnl\|dasNov1\|scaffold_84026 (38512-38426)
	15-150, gnl\|echTel1\|scaffold_23750 (1886-1800)
	15-150, gnl\|fr1\|chrUn (29046583-29046498)
	15-150, gnl\|galGal2\|chr13 (16018853-16018939)
	15-150, gnl\|hg17\|chr5 (132124722-132124808)
	15-150, gnl\|Hg17\|chr5 (132124859-132124724)
	15-150, gnl\|loxAfr1\|scaffold_18767 (28907-28821)
	15-150, gnl\|mm7\|chr11 (53494380-53494294)
	15-150, gnl\|Mm7\|chr11 (53494241-53494376)
	15-150, gnl\|monDom2\|scaffold_6 (92566309-92566223)
	15-150, gnl\|oryCun1\|scaffold_196964 (1917-1831)
	15-150, gnl\|panTro1\|chr4 (138461454-138461540)
	15-150, gnl\|rheMac2\|chr6 (129168209-129168295)
	15-150, gnl\|rn3\|chr10 (39010562-39010476)
	15-150, gnl\|tetNig1\|chr7 (8927481-8927566)
	15-150, gnl\|xenTro1\|scaffold_473 (648482-648568)

	eye (0.341006)
	cbe (0.239234)
	spc (0.226732)
	fty (0.17584)
	fbs (0.175346)
	isp (0.150376)
	ova (0.129132)
	ese (0.126502)
	eep (0.122564)
	jej (0.0989218)