Non-Coding RNA Search

Ss1.1-Pig4-TMW8059B01.3

Sequence:


               
               TGAGGAAAAGAAGAAGATCCGGACGCTGCTGAACGCAAGCTGTGACAACATGCTGATGGG
CATAAAGTCTCTGAAAATAGTGAAGAAGACGGCGGACACAGACGGCTCTTGGATGAAAGA
CGCTGCCGGTGACTCTCCAAAGGTTTATTTCTTCCCTGGGCCCCGGAGCAACACGGTCTG
GGAATTTGCCAACATGCGGGCATTCACGGAAGACAGCACCAAGCCCGGCCCCCGGAAGCT
GATCCTCGCACACTCCTGGCAGGGCACAGGCCAAGTGATCTACCAAGGTTTCCTGTTTTT
TCACAACCACGGGACCCCCAATGAGATCGTCAAGTACAACCTGCACAAGAGGAGCCTGGA
AGACCGAATGCTGCTCTCGGGAGGGGTCGGCAGAGCCCCGGTCTACCAGCACTCCGCCGC
CACGTACATTGACCTGGCCGTGGACGAGCACGGGCTCTGGGCCATCCACTCGGGGCCAGG
CATCCAGGGCCACTTGGTTCTCACGAAAATCGCGGCCGACACCCTGGGTGTGGAACACTC
CTGGGACACTCCGTGCCGAAGCCAGGACGCCGAAGCCTCGTTCCTCGTGTGTGGGGTGCT
CTACGTGGTCTACAGTTCTGGGGGCCACGGCCCGCATCGCATCACCTGCGTTTACGACCC
GCTGGGCACTGTCACGGAGGACAGTCTGCCCAGCCTGTTCTTCCCCAGGCGGCCGAGAAG
TCACTCTGTGATCCATTACAACCCCAGAGATAAGCAGCTCTACGCCTGGAACGATGGGAA
CCAGATCATTTACAGACTCCAGACAAAGAGAAAGCAGCCTCTGGAGTGACGCGTCCCAGC
TGGGAGGGGGAGTGCCAGGAGCGCTGCTCTCCAGGACAGGGAGCCACGGCCTCGCAAGAC
AGCACCCTCCTGATCACACACGGAGGGGGGCTGGAAGTGGGAAGGCACCCGCATCCTTAT
CGGATGGCACCGCTGTAGGTATCTCGGAGCTCAGATGATAAGAGTCAGGAATTTTCAACA
CCGTCCACGCCCCATCCAAACCTCCCGGTGCTCAAGGCCCTCCACGTACTGACCCAGCTT
CTTCCAGCCGTTCCTTTCTTCACACTTACTCCACCTCCCCTCGCCCCCGCCCCTTCCCCA
CCCTCCCAGCCCTTAGAAATGCAGGCAACCTTCTAATACTGAGGTTTCTCTCCTCCCGCC
TTTGCTCAGGCTCCTTGCTCTTTCTCGAATGCCCATTGAGGTGCCTCCATGTTTCACGGC
CCAGCTGCTGTGCTCTTTCTTATTGATGTTTAATCTCACTTTCTTATTGATGTTTCTCAT
TGAGGTTAATCCCTGGTTCTGGAGCTCCACCACGCTAGGCGATGTTCTAATAAAGTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGAAAAGAAGAAGATCCGGACGCTGCTGAACGCAAGCTGTGACAACATGCTGATGGG
CATAAAGTCTCTGAAAATAGTGAAGAAGACGGCGGACACAGACGGCTCTTGGATGAAAGA
CGCTGCCGGTGACTCTCCAAAGGTTTATTTCTTCCCTGGGCCCCGGAGCAACACGGTCTG
GGAATTTGCCAACATGCGGGCATTCACGGAAGACAGCACCAAGCCCGGCCCCCGGAAGCT
GATCCTCGCACACTCCTGGCAGGGCACAGGCCAAGTGATCTACCAAGGTTTCCTGTTTTT
TCACAACCACGGGACCCCCAATGAGATCGTCAAGTACAACCTGCACAAGAGGAGCCTGGA
AGACCGAATGCTGCTCTCGGGAGGGGTCGGCAGAGCCCCGGTCTACCAGCACTCCGCCGC
CACGTACATTGACCTGGCCGTGGACGAGCACGGGCTCTGGGCCATCCACTCGGGGCCAGG
CATCCAGGGCCACTTGGTTCTCACGAAAATCGCGGCCGACACCCTGGGTGTGGAACACTC
CTGGGACACTCCGTGCCGAAGCCAGGACGCCGAAGCCTCGTTCCTCGTGTGTGGGGTGCT
CTACGTGGTCTACAGTTCTGGGGGCCACGGCCCGCATCGCATCACCTGCGTTTACGACCC
GCTGGGCACTGTCACGGAGGACAGTCTGCCCAGCCTGTTCTTCCCCAGGCGGCCGAGAAG
TCACTCTGTGATCCATTACAACCCCAGAGATAAGCAGCTCTACGCCTGGAACGATGGGAA
CCAGATCATTTACAGACTCCAGACAAAGAGAAAGCAGCCTCTGGAGTGACGCGTCCCAGC
TGGGAGGGGGAGTGCCAGGAGCGCTGCTCTCCAGGACAGGGAGCCACGGCCTCGCAAGAC
AGCACCCTCCTGATCACACACGGAGGGGGGCTGGAAGTGGGAAGGCACCCGCATCCTTAT
CGGATGGCACCGCTGTAGGTATCTCGGAGCTCAGATGATAAGAGTCAGGAATTTTCAACA
CCGTCCACGCCCCATCCAAACCTCCCGGTGCTCAAGGCCCTCCACGTACTGACCCAGCTT
CTTCCAGCCGTTCCTTTCTTCACACTTACTCCACCTCCCCTCGCCCCCGCCCCTTCCCCA
CCCTCCCAGCCCTTAGAAATGCAGGCAACCTTCTAATACTGAGGTTTCTCTCCTCCCGCC
TTTGCTCAGGCTCCTTGCTCTTTCTCGAATGCCCATTGAGGTGCCTCCATGTTTCACGGC
CCAGCTGCTGTGCTCTTTCTTATTGATGTTTAATCTCACTTTCTTATTGATGTTTCTCAT
TGAGGTTAATCCCTGGTTCTGGAGCTCCACCACGCTAGGCGATGTTCTAATAAAGTGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57102654|ref|XP_534043.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57102654|ref|XP_534043.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-516, - strand, RNAz p=0.548656
               

               
               717-836, - strand, RNAz p=0.919937

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-516, - strand, RNAz p=0.548656
               

               
               717-836, - strand, RNAz p=0.919937

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               39-891, gnl|bosTau2|chr15 (31039495-31040347)
               

               
               39-891, gnl|Hg17|chr11 (7487205-7488064)
               

               
               39-891, gnl|Mm7|chr7 (103487002-103487860)
               


               
               901-1292, gnl|bosTau2|chr15 (31040382-31040797)
               

               
               901-1292, gnl|canFam2|chr21 (34350835-34351094)
               

               
               901-1292, gnl|echTel1|scaffold_287664 (7560-7801)
               

               
               901-1292, gnl|hg17|chr11 (7488028-7488320)
               

               
               901-1292, gnl|Hg17|chr11 (7488077-7488471)
               

               
               901-1292, gnl|mm7|chr7 (103487824-103488112)
               

               
               901-1292, gnl|Mm7|chr7 (103487879-103488229)
               

               
               901-1292, gnl|monDom2|scaffold_10 (50747195-50746847)
               

               
               901-1292, gnl|oryCun1|scaffold_203545 (196882-196621)
               

               
               901-1292, gnl|panTro1|chr9 (7601525-7601817)
               

               
               901-1292, gnl|rheMac2|chr14 (64483786-64483488)
               

               
               901-1292, gnl|rn3|chr1 (165071583-165071848)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-891, gnl|bosTau2|chr15 (31039495-31040347)
               

               
               39-891, gnl|Hg17|chr11 (7487205-7488064)
               

               
               39-891, gnl|Mm7|chr7 (103487002-103487860)
               


               
               901-1292, gnl|bosTau2|chr15 (31040382-31040797)
               

               
               901-1292, gnl|canFam2|chr21 (34350835-34351094)
               

               
               901-1292, gnl|echTel1|scaffold_287664 (7560-7801)
               

               
               901-1292, gnl|hg17|chr11 (7488028-7488320)
               

               
               901-1292, gnl|Hg17|chr11 (7488077-7488471)
               

               
               901-1292, gnl|mm7|chr7 (103487824-103488112)
               

               
               901-1292, gnl|Mm7|chr7 (103487879-103488229)
               

               
               901-1292, gnl|monDom2|scaffold_10 (50747195-50746847)
               

               
               901-1292, gnl|oryCun1|scaffold_203545 (196882-196621)
               

               
               901-1292, gnl|panTro1|chr9 (7601525-7601817)
               

               
               901-1292, gnl|rheMac2|chr14 (64483786-64483488)
               

               
               901-1292, gnl|rn3|chr1 (165071583-165071848)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               jca (0.11396)

	397-516, - strand, RNAz p=0.548656
	717-836, - strand, RNAz p=0.919937

	39-891, gnl\|bosTau2\|chr15 (31039495-31040347)
	39-891, gnl\|Hg17\|chr11 (7487205-7488064)
	39-891, gnl\|Mm7\|chr7 (103487002-103487860)

	901-1292, gnl\|bosTau2\|chr15 (31040382-31040797)
	901-1292, gnl\|canFam2\|chr21 (34350835-34351094)
	901-1292, gnl\|echTel1\|scaffold_287664 (7560-7801)
	901-1292, gnl\|hg17\|chr11 (7488028-7488320)
	901-1292, gnl\|Hg17\|chr11 (7488077-7488471)
	901-1292, gnl\|mm7\|chr7 (103487824-103488112)
	901-1292, gnl\|Mm7\|chr7 (103487879-103488229)
	901-1292, gnl\|monDom2\|scaffold_10 (50747195-50746847)
	901-1292, gnl\|oryCun1\|scaffold_203545 (196882-196621)
	901-1292, gnl\|panTro1\|chr9 (7601525-7601817)
	901-1292, gnl\|rheMac2\|chr14 (64483786-64483488)
	901-1292, gnl\|rn3\|chr1 (165071583-165071848)