Ss1.1-Pig4-TMW8059B04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATCCCCGTGTACAAGCGATGCAACCAGCGTTTGCAAGTAAAATCACTGGCATGCTGTTG GAATTATCCCCAGCTCAGCTGCTGCTGCTTCTAGCAAGTGAAGATTCTCTGAGAGCGAGA GTGGATGAAGCCATGGAACTCATTATTGCACATGGACGGGAAAATGGAGCCGATAGTATC CTGGATCTTGGATTATTAGACTCCTCAGAAAAGGTACAGGAAAACCGGAAACGTCATGGT TCTAGTCGAAGCGTAGTAGATATGGATTTAGATGATACAGATGATGGTGATGACAATGCC CCCTTGTTTTACCAACCGGGAAAAAGAGGATTTTACACTCCAAGGCCTGGCAAAAACACA GAAGCAAGGTTGAATTGCTTCAGAAATATTGGCAGGATTCTTGGACTATGTCTGTTACAG AATGAGCTATGTCCTATCACATTGAATAGACATGTGATTAAAGTGTTGCTTGGTAGGAAA GTCAATTGGCATGATTTTGCTTTTTTTGACCCTGTGATGTATGAGAGTTTGCGGCAACTT ATACTTGCTTCTCAGAGTTCAGATGCCGATGCTGTTTTCTCAGCGATGGATTTGGCATTT GCAATTGACCTGTGTAAAGAAGAGGGTGGAGGACAGGTTGAACTTATCCCTAATGGTGTA AATATACCAGTCACTCCTCAGAATGTGTATGAATATGTGCGGAAATATGCTGAACACAGA ATGTTGGTGGTTGCAGAACAGCCATTACATGCAATGAGAAAAGGTCTATTGGATGTGCTT CCAAAAAATTCATTAGAAGATTTAACAGCAGAAGATTTTAGGCTTTTGGTAAATGGCTGT GGTGAAGTTAATGTGCAGATGCTGATCAGTTTCACCTCTTTCAATGATGAATCAGGAGAA AATGCTGAGAAGCTCTTGCAGTTCAAACGCTGGTTCTGGTCAATTGTGGAAAAGATGAGC ATGACAGAACGACAAGATCTTGTTTACTTTTGGACATCAAGCCCATCATTACCAGCCAGT GAAGAAGGATTTCAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTT CCTACCGCAAACACTTGCATTTCTCGACTTTACGTCCCACTCTATTCCTCTAAACAGATT CTCAAACAGAAATTGCTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATA AAAAGTGTGTATTGCTGTGTAATATTACTAGCTAATTTTGTAGATTTTTTTCCATTTGTC TATAAAAGTTTATGAAAGTTAATGCTGTCACACCCCCTGGTGGTACCTTAAAGAAATTAA ATGCAAACATTCCTTGCTGAGTTTGTAGCTTAAAGGCCTAAGGAGCACTAGCAACACTTG ACTATAATAGTTTGCTAGTCAACAACTTCTGGGTCTAACCCCAGCCAAAGATGACAGCAG AACAACATAATTTACACTGTGATTTATCTTTTTGCTGAGGGGAAAAACTGTAAAATGTTT GAAAATTCACTGCTGCCTTTGTGGAAAGTGTTTCAGCAAAGGTTCTTGTATAGAAGGAAT AGGGAATTTCAAAATAAAAAATTAAGTATGTTCTGTGTTTTCATTTTAACTTTTTTTATG GTGTTTAATTTGTGGTTGGCTGCAATTGTGTATCATGTATATGGAACTTGTAAAAAAAAA AAGTTCTGGACATTCAGATCTTAGAGATGAAATCACTTTTACCTATAAAAACCACTTTTA TTGCGGTTTGACTGCATTGAGCTCTAGGATATTAAATGATATCACTAATATTTTGCATGT AATTTGTTCATTTGAGTGAGGGCACTTTTTTGTACATATGATGGGGCCAATGCACAATAC TTTATTATCACAATCAACTTTTTTTTCTTTGTAAATCCCTATTTCAGTGAGCAGTCAGTC AGGAGTACTGCACTTCAGTTCTAACCAGACATTTGTACTAAGGCATTTCAGTTATGTAAA CTCAGCCTGGGCACTTTCTGATAACTGTAAAATGTTTTATAAGATCATGATTATTGAAGA TACATTTTGGAAAATTTTAAATGTTCGTGAGCAGCTTAACTACTTTTGTATCTAGCCTTT TTTAAGTATCTTGTTACATTTACTTTTTTTTATAAAGAAATTACAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATCCCCGTGTACAAGCGATGCAACCAGCGTTTGCAAGTAAAATCACTGGCATGCTGTTG GAATTATCCCCAGCTCAGCTGCTGCTGCTTCTAGCAAGTGAAGATTCTCTGAGAGCGAGA GTGGATGAAGCCATGGAACTCATTATTGCACATGGACGGGAAAATGGAGCCGATAGTATC CTGGATCTTGGATTATTAGACTCCTCAGAAAAGGTACAGGAAAACCGGAAACGTCATGGT TCTAGTCGAAGCGTAGTAGATATGGATTTAGATGATACAGATGATGGTGATGACAATGCC CCCTTGTTTTACCAACCGGGAAAAAGAGGATTTTACACTCCAAGGCCTGGCAAAAACACA GAAGCAAGGTTGAATTGCTTCAGAAATATTGGCAGGATTCTTGGACTATGTCTGTTACAG AATGAGCTATGTCCTATCACATTGAATAGACATGTGATTAAAGTGTTGCTTGGTAGGAAA GTCAATTGGCATGATTTTGCTTTTTTTGACCCTGTGATGTATGAGAGTTTGCGGCAACTT ATACTTGCTTCTCAGAGTTCAGATGCCGATGCTGTTTTCTCAGCGATGGATTTGGCATTT GCAATTGACCTGTGTAAAGAAGAGGGTGGAGGACAGGTTGAACTTATCCCTAATGGTGTA AATATACCAGTCACTCCTCAGAATGTGTATGAATATGTGCGGAAATATGCTGAACACAGA ATGTTGGTGGTTGCAGAACAGCCATTACATGCAATGAGAAAAGGTCTATTGGATGTGCTT CCAAAAAATTCATTAGAAGATTTAACAGCAGAAGATTTTAGGCTTTTGGTAAATGGCTGT GGTGAAGTTAATGTGCAGATGCTGATCAGTTTCACCTCTTTCAATGATGAATCAGGAGAA AATGCTGAGAAGCTCTTGCAGTTCAAACGCTGGTTCTGGTCAATTGTGGAAAAGATGAGC ATGACAGAACGACAAGATCTTGTTTACTTTTGGACATCAAGCCCATCATTACCAGCCAGT GAAGAAGGATTTCAGCCTATGCCCTCAATCACAATAAGACCACCAGATGACCAACATCTT CCTACCGCAAACACTTGCATTTCTCGACTTTACGTCCCACTCTATTCCTCTAAACAGATT CTCAAACAGAAATTGCTACTCGCCATTAAGACCAAGAATTTTGGTTTTGTGTAGAGTATA AAAAGTGTGTATTGCTGTGTAATATTACTAGCTAATTTTGTAGATTTTTTTCCATTTGTC TATAAAAGTTTATGAAAGTTAATGCTGTCACACCCCCTGGTGGTACCTTAAAGAAATTAA ATGCAAACATTCCTTGCTGAGTTTGTAGCTTAAAGGCCTAAGGAGCACTAGCAACACTTG ACTATAATAGTTTGCTAGTCAACAACTTCTGGGTCTAACCCCAGCCAAAGATGACAGCAG AACAACATAATTTACACTGTGATTTATCTTTTTGCTGAGGGGAAAAACTGTAAAATGTTT GAAAATTCACTGCTGCCTTTGTGGAAAGTGTTTCAGCAAAGGTTCTTGTATAGAAGGAAT AGGGAATTTCAAAATAAAAAATTAAGTATGTTCTGTGTTTTCATTTTAACTTTTTTTATG GTGTTTAATTTGTGGTTGGCTGCAATTGTGTATCATGTATATGGAACTTGTAAAAAAAAA AAGTTCTGGACATTCAGATCTTAGAGATGAAATCACTTTTACCTATAAAAACCACTTTTA TTGCGGTTTGACTGCATTGAGCTCTAGGATATTAAATGATATCACTAATATTTTGCATGT AATTTGTTCATTTGAGTGAGGGCACTTTTTTGTACATATGATGGGGCCAATGCACAATAC TTTATTATCACAATCAACTTTTTTTTCTTTGTAAATCCCTATTTCAGTGAGCAGTCAGTC AGGAGTACTGCACTTCAGTTCTAACCAGACATTTGTACTAAGGCATTTCAGTTATGTAAA CTCAGCCTGGGCACTTTCTGATAACTGTAAAATGTTTTATAAGATCATGATTATTGAAGA TACATTTTGGAAAATTTTAAATGTTCGTGAGCAGCTTAACTACTTTTGTATCTAGCCTTT TTTAAGTATCTTGTTACATTTACTTTTTTTTATAAAGAAATTACAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1363-1481, + strand, RNAz p=0.779506 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1363-1481, + strand, RNAz p=0.779506 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015902, + |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 28-162, gnl|bosTau2|chr14 (14055693-14055827) | |
| 28-162, gnl|canFam2|chr13 (6920162-6920336) | |
| 28-162, gnl|danRer3|chrNA (100947495-100947330) | |
| 28-162, gnl|dasNov1|scaffold_25201 (39065-39239) | |
| 28-162, gnl|echTel1|scaffold_241249 (4900-5071) | |
| 28-162, gnl|fr1|chrUn (12317049-12317218) | |
| 28-162, gnl|galGal2|chr2 (127614804-127614636) | |
| 28-162, gnl|hg17|chr8 (103350374-103350546) | |
| 28-162, gnl|Hg17|chr8 (103350512-103350378) | |
| 28-162, gnl|mm7|chr15 (38090469-38090642) | |
| 28-162, gnl|Mm7|chr15 (38090607-38090473) | |
| 28-162, gnl|monDom2|scaffold_3 (60917204-60917017) | |
| 28-162, gnl|oryCun1|scaffold_161584 (2498-2327) | |
| 28-162, gnl|panTro1|chr7 (105720713-105720885) | |
| 28-162, gnl|rheMac2|chr8 (104774553-104774726) | |
| 28-162, gnl|rn3|chr7 (73500255-73500439) | |
| 28-162, gnl|tetNig1|chr8 (9662964-9662816) | |
| 28-162, gnl|xenTro1|scaffold_3 (5675856-5675701) | |
| 218-396, gnl|bosTau2|chr14 (14061839-14062017) | |
| 218-396, gnl|canFam2|chr13 (6916433-6916639) | |
| 218-396, gnl|danRer3|chrNA (100948977-100948771) | |
| 218-396, gnl|dasNov1|scaffold_39577 (835-629) | |
| 218-396, gnl|echTel1|scaffold_241249 (837-1039) | |
| 218-396, gnl|fr1|chrUn (12316507-12316712) | |
| 218-396, gnl|galGal2|chr2 (127615587-127615387) | |
| 218-396, gnl|hg17|chr8 (103346479-103346685) | |
| 218-396, gnl|Hg17|chr8 (103346681-103346503) | |
| 218-396, gnl|loxAfr1|scaffold_14074 (51950-51744) | |
| 218-396, gnl|mm7|chr15 (38086726-38086928) | |
| 218-396, gnl|Mm7|chr15 (38086924-38086746) | |
| 218-396, gnl|monDom2|scaffold_3 (60918894-60918687) | |
| 218-396, gnl|oryCun1|scaffold_161584 (6433-6227) | |
| 218-396, gnl|panTro1|chr7 (105716724-105716930) | |
| 218-396, gnl|rheMac2|chr8 (104770686-104770892) | |
| 218-396, gnl|rn3|chr7 (73497112-73497313) | |
| 218-396, gnl|tetNig1|chr8 (9663535-9663330) | |
| 218-396, gnl|xenTro1|scaffold_3 (5677125-5676919) | |
| 481-643, gnl|bosTau2|chr14 (14063621-14063783) | |
| 481-643, gnl|Hg17|chr8 (103343474-103343312) | |
| 481-643, gnl|Mm7|chr15 (38084145-38083983) | |
| 751-896, gnl|bosTau2|chr14 (14065640-14065785) | |
| 751-896, gnl|canFam2|chr13 (6912409-6912527) | |
| 751-896, gnl|danRer3|chrNA (100956457-100956339) | |
| 751-896, gnl|echTel1|scaffold_300701 (85321-85208) | |
| 751-896, gnl|fr1|chrUn (12315587-12315700) | |
| 751-896, gnl|galGal2|chr2 (127618573-127618460) | |
| 751-896, gnl|hg17|chr8 (103340380-103340498) | |
| 751-896, gnl|Hg17|chr8 (103340533-103340388) | |
| 751-896, gnl|loxAfr1|scaffold_103820 (4161-4043) | |
| 751-896, gnl|mm7|chr15 (38082426-38082544) | |
| 751-896, gnl|Mm7|chr15 (38082579-38082434) | |
| 751-896, gnl|monDom2|scaffold_3 (60924009-60923891) | |
| 751-896, gnl|oryCun1|scaffold_161584 (11618-11501) | |
| 751-896, gnl|panTro1|chr7 (105710575-105710693) | |
| 751-896, gnl|rheMac2|chr8 (104764591-104764709) | |
| 751-896, gnl|rn3|chr7 (73492440-73492558) | |
| 751-896, gnl|tetNig1|chr8 (9664439-9664321) | |
| 751-896, gnl|xenTro1|scaffold_3 (5679506-5679393) | |
| 982-2148, gnl|bosTau2|chr14 (14070660-14071809) | |
| 982-2148, gnl|Hg17|chr8 (103335918-103334756) | |
| 982-2148, gnl|Mm7|chr15 (38079192-38078027) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-162, gnl|bosTau2|chr14 (14055693-14055827) | |
| 28-162, gnl|canFam2|chr13 (6920162-6920336) | |
| 28-162, gnl|danRer3|chrNA (100947495-100947330) | |
| 28-162, gnl|dasNov1|scaffold_25201 (39065-39239) | |
| 28-162, gnl|echTel1|scaffold_241249 (4900-5071) | |
| 28-162, gnl|fr1|chrUn (12317049-12317218) | |
| 28-162, gnl|galGal2|chr2 (127614804-127614636) | |
| 28-162, gnl|hg17|chr8 (103350374-103350546) | |
| 28-162, gnl|Hg17|chr8 (103350512-103350378) | |
| 28-162, gnl|mm7|chr15 (38090469-38090642) | |
| 28-162, gnl|Mm7|chr15 (38090607-38090473) | |
| 28-162, gnl|monDom2|scaffold_3 (60917204-60917017) | |
| 28-162, gnl|oryCun1|scaffold_161584 (2498-2327) | |
| 28-162, gnl|panTro1|chr7 (105720713-105720885) | |
| 28-162, gnl|rheMac2|chr8 (104774553-104774726) | |
| 28-162, gnl|rn3|chr7 (73500255-73500439) | |
| 28-162, gnl|tetNig1|chr8 (9662964-9662816) | |
| 28-162, gnl|xenTro1|scaffold_3 (5675856-5675701) | |
| 218-396, gnl|bosTau2|chr14 (14061839-14062017) | |
| 218-396, gnl|canFam2|chr13 (6916433-6916639) | |
| 218-396, gnl|danRer3|chrNA (100948977-100948771) | |
| 218-396, gnl|dasNov1|scaffold_39577 (835-629) | |
| 218-396, gnl|echTel1|scaffold_241249 (837-1039) | |
| 218-396, gnl|fr1|chrUn (12316507-12316712) | |
| 218-396, gnl|galGal2|chr2 (127615587-127615387) | |
| 218-396, gnl|hg17|chr8 (103346479-103346685) | |
| 218-396, gnl|Hg17|chr8 (103346681-103346503) | |
| 218-396, gnl|loxAfr1|scaffold_14074 (51950-51744) | |
| 218-396, gnl|mm7|chr15 (38086726-38086928) | |
| 218-396, gnl|Mm7|chr15 (38086924-38086746) | |
| 218-396, gnl|monDom2|scaffold_3 (60918894-60918687) | |
| 218-396, gnl|oryCun1|scaffold_161584 (6433-6227) | |
| 218-396, gnl|panTro1|chr7 (105716724-105716930) | |
| 218-396, gnl|rheMac2|chr8 (104770686-104770892) | |
| 218-396, gnl|rn3|chr7 (73497112-73497313) | |
| 218-396, gnl|tetNig1|chr8 (9663535-9663330) | |
| 218-396, gnl|xenTro1|scaffold_3 (5677125-5676919) | |
| 481-643, gnl|bosTau2|chr14 (14063621-14063783) | |
| 481-643, gnl|Hg17|chr8 (103343474-103343312) | |
| 481-643, gnl|Mm7|chr15 (38084145-38083983) | |
| 751-896, gnl|bosTau2|chr14 (14065640-14065785) | |
| 751-896, gnl|canFam2|chr13 (6912409-6912527) | |
| 751-896, gnl|danRer3|chrNA (100956457-100956339) | |
| 751-896, gnl|echTel1|scaffold_300701 (85321-85208) | |
| 751-896, gnl|fr1|chrUn (12315587-12315700) | |
| 751-896, gnl|galGal2|chr2 (127618573-127618460) | |
| 751-896, gnl|hg17|chr8 (103340380-103340498) | |
| 751-896, gnl|Hg17|chr8 (103340533-103340388) | |
| 751-896, gnl|loxAfr1|scaffold_103820 (4161-4043) | |
| 751-896, gnl|mm7|chr15 (38082426-38082544) | |
| 751-896, gnl|Mm7|chr15 (38082579-38082434) | |
| 751-896, gnl|monDom2|scaffold_3 (60924009-60923891) | |
| 751-896, gnl|oryCun1|scaffold_161584 (11618-11501) | |
| 751-896, gnl|panTro1|chr7 (105710575-105710693) | |
| 751-896, gnl|rheMac2|chr8 (104764591-104764709) | |
| 751-896, gnl|rn3|chr7 (73492440-73492558) | |
| 751-896, gnl|tetNig1|chr8 (9664439-9664321) | |
| 751-896, gnl|xenTro1|scaffold_3 (5679506-5679393) | |
| 982-2148, gnl|bosTau2|chr14 (14070660-14071809) | |
| 982-2148, gnl|Hg17|chr8 (103335918-103334756) | |
| 982-2148, gnl|Mm7|chr15 (38079192-38078027) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| liv (0.438853) | |
| pla (0.401016) | |
| sug (0.381874) | |
| fhi (0.339155) | |
| lin (0.291206) | |
| bla (0.248694) | |
| ton (0.1755) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ret (0.128733) | |
| clu (0.119646) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.438853) | |
| pla (0.401016) | |
| sug (0.381874) | |
| fhi (0.339155) | |
| lin (0.291206) | |
| bla (0.248694) | |
| ton (0.1755) | |
| rec (0.17307) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ret (0.128733) | |
| clu (0.119646) | |
| eje (0.0988338) | |
| ldo (0.0970026) |