Non-Coding RNA Search

Ss1.1-Pig4-TMW8059B07.3

Sequence:


               
               TTCTGACCTGGCTCCTCATCCTTCTGTTGGGCCCACCTCTGAGACCAGCTTTGCAAGCAG
GACTGGAGATGGACATCAGACCCTTGTGAGAAACTCGGACCAGGCATTTCGGACAGAGTT
TAACTTGATGTATGCCTACTCTCCATTGAATGCTATGCCTCGAGCAGATGGATTATATCG
AGGATCTCCCCTAGTAGGGGATAGGAAGCCTTTACATTTGGATGGGGGCTATTGTTCCCC
TGCAGAAGGGTTTCCCAGCAGATATGAACATGGTTTTATGAAAGACCTCTCTCGTGGATC
CATGTCACCTGGAGGTGAAAGGGCTTGTGACGGAGTCCCATCTGCCCCCCAGAACCCACC
ACAAAGGAAAAAGGTATCCCTGCTGGAGTACCGCAAAAGGAAACAAGAAGCCAAGGAAAA
TTCTGCTGGTGGGGGAGGCGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCGGGGCA
AGGCAGCAGTAACTCACTTTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCG
AACCCCATCTTCCCCTCATAAAAAGTTCTCCCCATCTCATTCCTCTATGTCTCATTTGGA
GGCGGTAAGCCCATCAGATTCCAGAGGCACTTCATCTCACTGCAGACCTCAAGAGAATAT
CAGCAGTAGGTGGATGGTTCCCACATCAGTAGAAAGACTCCGAGAAGGAGGGAGCATCCC
CAAGGTCCTCCGAAGCAGTGTGAGGGTGGCCCAGAAAGGAGAGCCTTCCCCCACGTGGGA
GAGTAACATCACAGAAAAAGACTCAGACCCTACTGATGGTGAAGGCCCAGAGACACTGAG
CTCAGCACTCTCTAAAGGAGCAGCCGTTTACAGCCCTTCCCGATACAGTTTCTAGCTCCT
GCAGTGTGATAGTCCACGGACAGAATCACAAAGCCTCCTTCAACAGAGTTCCTCCCCCTT
TAGAGGACATCCCACCCAGTCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGG
GAACCCCCCTTCTCATGGTTCTTCAGAATCCTCCCTCTCTTCTACGTCCTATTCCAGCCC
CGCCCACCCTGTGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTATAG
CAGCCAGCCACATTCTGGAAACAGCACCGGCAGCAGTCTTCCAAGGAGGAGCTGCCCTTC
TAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAGACTCGCCGACCTCAGACTCGGTTTC
CCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTGCTCAGAACTCTAGGTCGTCATT
GCCATCAGACTTCCGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGCCTACCAGGC
CTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGAGGGAGTGGGGGTGT
GCACCAGTACCGGCTCCAGCCACTGCAGGGGTCGGGGGTCAAGACTCAGACAGGACTTTC
CTAGGGCTTCTGGATTTGGGCAAACAGAACTGAATGAGCCCATAGCTGCTTCCTTCCAGC
TGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAAGGGGGTACAAGGTGCCAGAGGAT
TGGGTCTGGTCGACAAGAAACAAGACTTATGGTCGCGACTGGCTCTGGCCTTGGAGAAAG
ATGTAAATCTTGTCTGAAGCAGAGACTATAAAGAAGTTTCTCCCTGCTGTTAAGGGTACA
TTGTTGACAAGCAAATGGTGTTTCGGTTAGTAACGGTTCTAAGTGCAATGAGTTGTGTTG
AAGCCTCCATCTCCCATCCTTGCCTGTAACCTGAAGTCACTTGTGCAGTGAGGATATCTT
TTTAAACCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGACCTGGCTCCTCATCCTTCTGTTGGGCCCACCTCTGAGACCAGCTTTGCAAGCAG
GACTGGAGATGGACATCAGACCCTTGTGAGAAACTCGGACCAGGCATTTCGGACAGAGTT
TAACTTGATGTATGCCTACTCTCCATTGAATGCTATGCCTCGAGCAGATGGATTATATCG
AGGATCTCCCCTAGTAGGGGATAGGAAGCCTTTACATTTGGATGGGGGCTATTGTTCCCC
TGCAGAAGGGTTTCCCAGCAGATATGAACATGGTTTTATGAAAGACCTCTCTCGTGGATC
CATGTCACCTGGAGGTGAAAGGGCTTGTGACGGAGTCCCATCTGCCCCCCAGAACCCACC
ACAAAGGAAAAAGGTATCCCTGCTGGAGTACCGCAAAAGGAAACAAGAAGCCAAGGAAAA
TTCTGCTGGTGGGGGAGGCGACTCTGCACAGAGCAAAAGCAAGTCTGCAGGAGCGGGGCA
AGGCAGCAGTAACTCACTTTCTGACACTGGTGCCCATGGTGTGCAGGGATCCTCAGCCCG
AACCCCATCTTCCCCTCATAAAAAGTTCTCCCCATCTCATTCCTCTATGTCTCATTTGGA
GGCGGTAAGCCCATCAGATTCCAGAGGCACTTCATCTCACTGCAGACCTCAAGAGAATAT
CAGCAGTAGGTGGATGGTTCCCACATCAGTAGAAAGACTCCGAGAAGGAGGGAGCATCCC
CAAGGTCCTCCGAAGCAGTGTGAGGGTGGCCCAGAAAGGAGAGCCTTCCCCCACGTGGGA
GAGTAACATCACAGAAAAAGACTCAGACCCTACTGATGGTGAAGGCCCAGAGACACTGAG
CTCAGCACTCTCTAAAGGAGCAGCCGTTTACAGCCCTTCCCGATACAGTTTCTAGCTCCT
GCAGTGTGATAGTCCACGGACAGAATCACAAAGCCTCCTTCAACAGAGTTCCTCCCCCTT
TAGAGGACATCCCACCCAGTCTCCAGGATACAGTTATCGAACTACTGCACTGAGACCTGG
GAACCCCCCTTCTCATGGTTCTTCAGAATCCTCCCTCTCTTCTACGTCCTATTCCAGCCC
CGCCCACCCTGTGTCCACAGACTCGTTGGCCCCATTTACGGGGACACCAGGGTATTATAG
CAGCCAGCCACATTCTGGAAACAGCACCGGCAGCAGTCTTCCAAGGAGGAGCTGCCCTTC
TAGTGCTGCTAGCCCTACCCCACAGGGCCCCTCAGACTCGCCGACCTCAGACTCGGTTTC
CCAGTCCAGCACAGGAACTCTGAGTTCCACCTCCTTTGCTCAGAACTCTAGGTCGTCATT
GCCATCAGACTTCCGGACTATCAGTCTGCCCAGTGCTGGGCAGTCAGCTGCCTACCAGGC
CTCCAGGGTATCTGCGGTTTCCAATTCACAGCACTACCCACACCGAGGGAGTGGGGGTGT
GCACCAGTACCGGCTCCAGCCACTGCAGGGGTCGGGGGTCAAGACTCAGACAGGACTTTC
CTAGGGCTTCTGGATTTGGGCAAACAGAACTGAATGAGCCCATAGCTGCTTCCTTCCAGC
TGCCTCTGGAACCTAGGCCGAGCATATTGCTGAGGAAGGGGGTACAAGGTGCCAGAGGAT
TGGGTCTGGTCGACAAGAAACAAGACTTATGGTCGCGACTGGCTCTGGCCTTGGAGAAAG
ATGTAAATCTTGTCTGAAGCAGAGACTATAAAGAAGTTTCTCCCTGCTGTTAAGGGTACA
TTGTTGACAAGCAAATGGTGTTTCGGTTAGTAACGGTTCTAAGTGCAATGAGTTGTGTTG
AAGCCTCCATCTCCCATCCTTGCCTGTAACCTGAAGTCACTTGTGCAGTGAGGATATCTT
TTTAAACCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10438004|dbj|BAB15144.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10438004|dbj|BAB15144.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               1-119, - strand, RNAz p=0.624874
               

               
               160-376, + strand, RNAz p=0.97459
               

               
               672-806, - strand, RNAz p=0.85612
               

               
               889-1407, - strand, RNAz p=0.994305
               

               
               1567-1723, + strand, RNAz p=0.911274

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.624874
               

               
               160-376, + strand, RNAz p=0.97459
               

               
               672-806, - strand, RNAz p=0.85612
               

               
               889-1407, - strand, RNAz p=0.994305
               

               
               1567-1723, + strand, RNAz p=0.911274

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC020956, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC020956, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-376, gnl|bosTau2|chr22 (14547868-14547493)
               

               
               1-376, gnl|Hg17|chr3 (9487241-9487616)
               

               
               1-376, gnl|Mm7|chr6 (113304639-113305014)
               


               
               672-806, gnl|bosTau2|chr22 (14543454-14543320)
               

               
               672-806, gnl|Hg17|chr3 (9491132-9491266)
               

               
               672-806, gnl|Mm7|chr6 (113310482-113310616)
               


               
               889-1872, gnl|bosTau2|chr22 (14542417-14541431)
               

               
               889-1872, gnl|Hg17|chr3 (9492160-9493153)
               

               
               889-1872, gnl|Mm7|chr6 (113311783-113312763)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-376, gnl|bosTau2|chr22 (14547868-14547493)
               

               
               1-376, gnl|Hg17|chr3 (9487241-9487616)
               

               
               1-376, gnl|Mm7|chr6 (113304639-113305014)
               


               
               672-806, gnl|bosTau2|chr22 (14543454-14543320)
               

               
               672-806, gnl|Hg17|chr3 (9491132-9491266)
               

               
               672-806, gnl|Mm7|chr6 (113310482-113310616)
               


               
               889-1872, gnl|bosTau2|chr22 (14542417-14541431)
               

               
               889-1872, gnl|Hg17|chr3 (9492160-9493153)
               

               
               889-1872, gnl|Mm7|chr6 (113311783-113312763)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cmu (0.372787)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)

	1-119, - strand, RNAz p=0.624874
	160-376, + strand, RNAz p=0.97459
	672-806, - strand, RNAz p=0.85612
	889-1407, - strand, RNAz p=0.994305
	1567-1723, + strand, RNAz p=0.911274

	1-376, gnl\|bosTau2\|chr22 (14547868-14547493)
	1-376, gnl\|Hg17\|chr3 (9487241-9487616)
	1-376, gnl\|Mm7\|chr6 (113304639-113305014)

	672-806, gnl\|bosTau2\|chr22 (14543454-14543320)
	672-806, gnl\|Hg17\|chr3 (9491132-9491266)
	672-806, gnl\|Mm7\|chr6 (113310482-113310616)

	889-1872, gnl\|bosTau2\|chr22 (14542417-14541431)
	889-1872, gnl\|Hg17\|chr3 (9492160-9493153)
	889-1872, gnl\|Mm7\|chr6 (113311783-113312763)

	cmu (0.372787)
	ese (0.253004)
	pgl (0.236967)
	ebs (0.236602)
	cje (0.165235)
	eli (0.151814)
	spl (0.143184)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)