Non-Coding RNA Search

Ss1.1-Pig4-TMW8059C06.5

Sequence:


               
               GACCTCCAGCCCCAGCATCCCTCTCGGTCTTCTGAAGCACAGTGTGCTGCCTTTGTGCAC
ACAGACAATTCTCGTGGCTCAGAAAGCACTTGTCCTCCACGAACCTGCCTCGTGTGGGTC
CCTGCCTTGGCCCCAAGATCACTCAGGAGCCCGACCAGAAGCCTGCTTTCTCTTTCTGCC
CCCACATCCAATCTCTAACAACTGTCAAGTTTACCATCTGAACATCTCTTGTTAGGAGCC
GCTCCCACTGTCACTGGCTTTCCCCTGGATTATTGTGACAGCCTCCTGCTTCTCTGTCCC
CCAGCCAGAGTAGTCTTTCTCATGCAGAGCTGACCCAGTCACTCCCTGGCCTACAACCTT
CCATGGCTCCGCACTGCCCTCAGGTAAAACCCAGACTCTTGAGCATGGCTTCTGAGACTC
ACGGTGTCATGGTTCTCGCCCGCCTCTCTGGCCTCATCACTTGCCCCTCGCACTCTGATC
CTCAGCCTCCTGTATCCAGAGAAGCCACTTTGATTCCCCTTTCTCCTATCCTCTCACTCT
CCTTCTCTGTCAATTCTCAGCTTAGATTTCACTTCTTCCAGGAAGGCTGAATGCCCCTTC
TCCCTCCAGCACCCACACATCACTCTGGGCTTACTTGCCTGCTTCCTGGTCTCTCTCCCT
CACTAGACTGTAAGCTCCTTGAGGGCAGGGATTGGCCTTCAATTTTTGTATCAACAGTGC
CTAGCTTGGCGCCTGGCACATAGAAAGTACTTAATAAACGTTTGTTTAATGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCTCCAGCCCCAGCATCCCTCTCGGTCTTCTGAAGCACAGTGTGCTGCCTTTGTGCAC
ACAGACAATTCTCGTGGCTCAGAAAGCACTTGTCCTCCACGAACCTGCCTCGTGTGGGTC
CCTGCCTTGGCCCCAAGATCACTCAGGAGCCCGACCAGAAGCCTGCTTTCTCTTTCTGCC
CCCACATCCAATCTCTAACAACTGTCAAGTTTACCATCTGAACATCTCTTGTTAGGAGCC
GCTCCCACTGTCACTGGCTTTCCCCTGGATTATTGTGACAGCCTCCTGCTTCTCTGTCCC
CCAGCCAGAGTAGTCTTTCTCATGCAGAGCTGACCCAGTCACTCCCTGGCCTACAACCTT
CCATGGCTCCGCACTGCCCTCAGGTAAAACCCAGACTCTTGAGCATGGCTTCTGAGACTC
ACGGTGTCATGGTTCTCGCCCGCCTCTCTGGCCTCATCACTTGCCCCTCGCACTCTGATC
CTCAGCCTCCTGTATCCAGAGAAGCCACTTTGATTCCCCTTTCTCCTATCCTCTCACTCT
CCTTCTCTGTCAATTCTCAGCTTAGATTTCACTTCTTCCAGGAAGGCTGAATGCCCCTTC
TCCCTCCAGCACCCACACATCACTCTGGGCTTACTTGCCTGCTTCCTGGTCTCTCTCCCT
CACTAGACTGTAAGCTCCTTGAGGGCAGGGATTGGCCTTCAATTTTTGTATCAACAGTGC
CTAGCTTGGCGCCTGGCACATAGAAAGTACTTAATAAACGTTTGTTTAATGAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-772, gnl|bosTau2|chr11 (9987188-9986412)
               

               
               1-772, gnl|Hg17|chr2 (71125565-71124728)
               

               
               1-772, gnl|Mm7|chr6 (83795004-83794270)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-772, gnl|bosTau2|chr11 (9987188-9986412)
               

               
               1-772, gnl|Hg17|chr2 (71125565-71124728)
               

               
               1-772, gnl|Mm7|chr6 (83795004-83794270)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ssp (0.13552)
               

               
               eje (0.0988338)

	1-772, gnl\|bosTau2\|chr11 (9987188-9986412)
	1-772, gnl\|Hg17\|chr2 (71125565-71124728)
	1-772, gnl\|Mm7\|chr6 (83795004-83794270)