Ss1.1-Pig4-TMW8059C07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCCCGCCGCCCCCTCCCGGGGCTGACCGCGTCGTCAAAGCTGTCCCTTTCCCCCCA ACACATCGTTTGACATCTGAAGAAGTATTTGACATGGATGGGATACCCAGGGTTGATGTT CTGAAGAACCACTTAGTAAAAGAAGGTCGGGTGGATGAAGAAATTGCACTTAGAATTATC AATGAGGGTGCTGCCATTCTTCGGAGAGAGAAAACCATGATAGAAGTAGAGGCTCCAATT ACAGTGTGTGGTGACATCCATGGCCAATTTTTTGATCTGATGAAACTTTTTGAAGTAGGA GGATCACCTGCTAATACACGATACCTTTTTCTTGGTGATTATGTGGACAGAGGTTATTTT AGTATAGAGTGTGTCTTATATTTATGGGTCCTGAAGATTCTATACCCAAGCACATTATTT CTTCTGAGAGGCAACCATGAATGCAGACACCTTACTGAATATTTTACCTTTAAACAGGAA TGTAAAATTAAATATTCAGAAAGAGTCTATGAAGCTTGTATGGAAGCTTTTGATAGCCTC CCTCTTGCTGCACTTTTAAATCAACAATTTCTTTGTGTTCATGGTGGACTTTCACCAGAA ATACACACACTGGATGATATTAGAAGATTAGATAGATTCAAAGAGCCACCTGCATTTGGA CCAATGTGTGACTTGCTATGGTCTGATCCTTCTGAAGATTTTGGAAATGAAAAATCACAG GAACATTTTAGTCACAATACAGTTCGAGGATGTTCTTATTTTTATAACTATCCAGCAGTG TGTGAATTTTTGCAAAACAATAATTTGTTATCGATTATTAGAGCTCATGAAGCTCAAGAT GCAGGCTATAGAATGTACAGAAAAAGTCAAACTACAGGGTTCCCTTCATTAATAACAATT TTTTCGGCACCTAATTACTTAGATGTCTACAATAATAAAGCTGCTGTATTAAAGTATGAA AATAATGTGATGAATATTCGACAATTTAACTGTTCTCCACATCCTTACTGGTTGCCCAAT TTTATGGATGTCTTCACCTGGTCTTTACCATTTGTTGGAGAAAAAGTGACAGAAATGTTG GTAAATGTTCTCAGTATTTGCTCTGATGATGAACTGATGACTGAAGGTGAAGACCAGTTT GATGGTTCAGCTGCTGCAGCCCGGAAAGAAATTATAAGAAACAAAATTCGAGCAATTGGC AAGATGGCAAGAGTCTTCTCTGTTCTCAGGGAGGAGAGTGAAAGTGTGCTGACACTCAAG GGCCTGACTCCCACAGGGATGTTGCCTAGTGGAGTGTTGGCTGGAGGACGGCAGACCCTG CAAAGTGCCACAGTTGAGGCTATTGAGGCTGAAAAAGCAATACGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCCCGCCGCCCCCTCCCGGGGCTGACCGCGTCGTCAAAGCTGTCCCTTTCCCCCCA ACACATCGTTTGACATCTGAAGAAGTATTTGACATGGATGGGATACCCAGGGTTGATGTT CTGAAGAACCACTTAGTAAAAGAAGGTCGGGTGGATGAAGAAATTGCACTTAGAATTATC AATGAGGGTGCTGCCATTCTTCGGAGAGAGAAAACCATGATAGAAGTAGAGGCTCCAATT ACAGTGTGTGGTGACATCCATGGCCAATTTTTTGATCTGATGAAACTTTTTGAAGTAGGA GGATCACCTGCTAATACACGATACCTTTTTCTTGGTGATTATGTGGACAGAGGTTATTTT AGTATAGAGTGTGTCTTATATTTATGGGTCCTGAAGATTCTATACCCAAGCACATTATTT CTTCTGAGAGGCAACCATGAATGCAGACACCTTACTGAATATTTTACCTTTAAACAGGAA TGTAAAATTAAATATTCAGAAAGAGTCTATGAAGCTTGTATGGAAGCTTTTGATAGCCTC CCTCTTGCTGCACTTTTAAATCAACAATTTCTTTGTGTTCATGGTGGACTTTCACCAGAA ATACACACACTGGATGATATTAGAAGATTAGATAGATTCAAAGAGCCACCTGCATTTGGA CCAATGTGTGACTTGCTATGGTCTGATCCTTCTGAAGATTTTGGAAATGAAAAATCACAG GAACATTTTAGTCACAATACAGTTCGAGGATGTTCTTATTTTTATAACTATCCAGCAGTG TGTGAATTTTTGCAAAACAATAATTTGTTATCGATTATTAGAGCTCATGAAGCTCAAGAT GCAGGCTATAGAATGTACAGAAAAAGTCAAACTACAGGGTTCCCTTCATTAATAACAATT TTTTCGGCACCTAATTACTTAGATGTCTACAATAATAAAGCTGCTGTATTAAAGTATGAA AATAATGTGATGAATATTCGACAATTTAACTGTTCTCCACATCCTTACTGGTTGCCCAAT TTTATGGATGTCTTCACCTGGTCTTTACCATTTGTTGGAGAAAAAGTGACAGAAATGTTG GTAAATGTTCTCAGTATTTGCTCTGATGATGAACTGATGACTGAAGGTGAAGACCAGTTT GATGGTTCAGCTGCTGCAGCCCGGAAAGAAATTATAAGAAACAAAATTCGAGCAATTGGC AAGATGGCAAGAGTCTTCTCTGTTCTCAGGGAGGAGAGTGAAAGTGTGCTGACACTCAAG GGCCTGACTCCCACAGGGATGTTGCCTAGTGGAGTGTTGGCTGGAGGACGGCAGACCCTG CAAAGTGCCACAGTTGAGGCTATTGAGGCTGAAAAAGCAATACGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 949-1327, - strand, RNAz p=0.982142 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 949-1327, - strand, RNAz p=0.982142 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 239-376, gnl|bosTau2|chr15 (41558132-41557994) | |
| 239-376, gnl|Hg17|chr4 (102387419-102387281) | |
| 239-376, gnl|Mm7|chr3 (136662855-136662993) | |
| 628-764, gnl|bosTau2|chr15 (41543786-41543650) | |
| 628-764, gnl|canFam2|chr32 (25677037-25677200) | |
| 628-764, gnl|danRer3|chr5 (21722972-21722813) | |
| 628-764, gnl|dasNov1|scaffold_415 (34413-34555) | |
| 628-764, gnl|echTel1|scaffold_310608 (109813-109650) | |
| 628-764, gnl|fr1|chrUn (4947099-4947257) | |
| 628-764, gnl|galGal2|chr4 (60828661-60828824) | |
| 628-764, gnl|hg17|chr4 (102372107-102372270) | |
| 628-764, gnl|Hg17|chr4 (102372250-102372114) | |
| 628-764, gnl|loxAfr1|scaffold_18441 (21579-21416) | |
| 628-764, gnl|mm7|chr3 (136675805-136675642) | |
| 628-764, gnl|Mm7|chr3 (136675660-136675796) | |
| 628-764, gnl|monDom2|scaffold_37 (11276753-11276590) | |
| 628-764, gnl|oryCun1|scaffold_213494 (146163-146000) | |
| 628-764, gnl|panTro1|chr7 (23362885-23362731) | |
| 628-764, gnl|rheMac2|chr5 (94057257-94057420) | |
| 628-764, gnl|rn3|chr2 (234334100-234333937) | |
| 628-764, gnl|tetNig1|chrUn_random (43852099-43851947) | |
| 628-764, gnl|xenTro1|scaffold_326 (946314-946149) | |
| 939-1066, gnl|bosTau2|chr15 (41513422-41513295) | |
| 939-1066, gnl|canFam2|chr32 (25648452-25648607) | |
| 939-1066, gnl|danRer3|chr5 (21729613-21729454) | |
| 939-1066, gnl|dasNov1|scaffold_415 (6996-7151) | |
| 939-1066, gnl|echTel1|scaffold_210752 (5363-5210) | |
| 939-1066, gnl|fr1|chrUn (215891221-215891375) | |
| 939-1066, gnl|galGal2|chr4 (60807157-60807316) | |
| 939-1066, gnl|hg17|chr4 (102341565-102341719) | |
| 939-1066, gnl|Hg17|chr4 (102341694-102341567) | |
| 939-1066, gnl|loxAfr1|scaffold_10694 (28490-28643) | |
| 939-1066, gnl|mm7|chr3 (136697491-136697337) | |
| 939-1066, gnl|Mm7|chr3 (136697360-136697487) | |
| 939-1066, gnl|monDom2|scaffold_37 (11317630-11317473) | |
| 939-1066, gnl|oryCun1|scaffold_213494 (179850-179696) | |
| 939-1066, gnl|panTro1|chr3 (118725596-118725750) | |
| 939-1066, gnl|rheMac2|chr5 (94026395-94026549) | |
| 939-1066, gnl|rn3|chr2 (234360080-234359926) | |
| 939-1066, gnl|tetNig1|chrUn_random (43854561-43854432) | |
| 939-1066, gnl|xenTro1|scaffold_326 (963395-963244) | |
| 1217-1327, gnl|bosTau2|chr28 (22658281-22658172) | |
| 1217-1327, gnl|Hg17|chr10 (74874598-74874489) | |
| 1217-1327, gnl|Mm7|chr14 (18165289-18165181) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 239-376, gnl|bosTau2|chr15 (41558132-41557994) | |
| 239-376, gnl|Hg17|chr4 (102387419-102387281) | |
| 239-376, gnl|Mm7|chr3 (136662855-136662993) | |
| 628-764, gnl|bosTau2|chr15 (41543786-41543650) | |
| 628-764, gnl|canFam2|chr32 (25677037-25677200) | |
| 628-764, gnl|danRer3|chr5 (21722972-21722813) | |
| 628-764, gnl|dasNov1|scaffold_415 (34413-34555) | |
| 628-764, gnl|echTel1|scaffold_310608 (109813-109650) | |
| 628-764, gnl|fr1|chrUn (4947099-4947257) | |
| 628-764, gnl|galGal2|chr4 (60828661-60828824) | |
| 628-764, gnl|hg17|chr4 (102372107-102372270) | |
| 628-764, gnl|Hg17|chr4 (102372250-102372114) | |
| 628-764, gnl|loxAfr1|scaffold_18441 (21579-21416) | |
| 628-764, gnl|mm7|chr3 (136675805-136675642) | |
| 628-764, gnl|Mm7|chr3 (136675660-136675796) | |
| 628-764, gnl|monDom2|scaffold_37 (11276753-11276590) | |
| 628-764, gnl|oryCun1|scaffold_213494 (146163-146000) | |
| 628-764, gnl|panTro1|chr7 (23362885-23362731) | |
| 628-764, gnl|rheMac2|chr5 (94057257-94057420) | |
| 628-764, gnl|rn3|chr2 (234334100-234333937) | |
| 628-764, gnl|tetNig1|chrUn_random (43852099-43851947) | |
| 628-764, gnl|xenTro1|scaffold_326 (946314-946149) | |
| 939-1066, gnl|bosTau2|chr15 (41513422-41513295) | |
| 939-1066, gnl|canFam2|chr32 (25648452-25648607) | |
| 939-1066, gnl|danRer3|chr5 (21729613-21729454) | |
| 939-1066, gnl|dasNov1|scaffold_415 (6996-7151) | |
| 939-1066, gnl|echTel1|scaffold_210752 (5363-5210) | |
| 939-1066, gnl|fr1|chrUn (215891221-215891375) | |
| 939-1066, gnl|galGal2|chr4 (60807157-60807316) | |
| 939-1066, gnl|hg17|chr4 (102341565-102341719) | |
| 939-1066, gnl|Hg17|chr4 (102341694-102341567) | |
| 939-1066, gnl|loxAfr1|scaffold_10694 (28490-28643) | |
| 939-1066, gnl|mm7|chr3 (136697491-136697337) | |
| 939-1066, gnl|Mm7|chr3 (136697360-136697487) | |
| 939-1066, gnl|monDom2|scaffold_37 (11317630-11317473) | |
| 939-1066, gnl|oryCun1|scaffold_213494 (179850-179696) | |
| 939-1066, gnl|panTro1|chr3 (118725596-118725750) | |
| 939-1066, gnl|rheMac2|chr5 (94026395-94026549) | |
| 939-1066, gnl|rn3|chr2 (234360080-234359926) | |
| 939-1066, gnl|tetNig1|chrUn_random (43854561-43854432) | |
| 939-1066, gnl|xenTro1|scaffold_326 (963395-963244) | |
| 1217-1327, gnl|bosTau2|chr28 (22658281-22658172) | |
| 1217-1327, gnl|Hg17|chr10 (74874598-74874489) | |
| 1217-1327, gnl|Mm7|chr14 (18165289-18165181) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| mas (0.210305) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| jca (0.11396) |