Ss1.1-Pig4-TMW8059C11.3.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTTTCCCGGCCACTCGGAATGTCCTGCGGCAGCTCCATGAACTCGCCCCTTCCATCTTCT TCTATTTGGTGGATGCGGAACAGGGACGGCTGTGTGGCTATCGACTGCGAAAGGACCTCA CCACTGAGCTGAGCTGGGAGCTGACTATCCCCCCGGAGGTACAGCGCATCGTCACGGTGA AGGGGAAGCGCAGCAGCGAGCACGTCCACTCCCAGGGCCGCGTGATGGGGGACCGCAGCG TGCTCTACAAGAGCCTGAACCCCAACCTGCTGGCCGTGGTGACGGAGAGCACAGATGTTC ACCACGAACGCACTTTCATCGGCATCTTCCTCGTGGACGGTGTCACCGGGCGCATCATCC ACTCGTCCGTGCAGAGGAAGGCCAGGGGCCCCGTCCACATCGTGCACTCGGAGAACTGGG TGGTGTACCAGTACTGGAACACCAAGGCCCGGCGCAACGAGTTCACCGCGCTGGAGCTCT ATGAGGGCACCGAGCAGTACAACGCCACCGCCTTCAGCTCCCTGGACCGCCCTCAGCTGC CCCAGGTGCTCCAGCAGTCCTACATCTTCCCATCCCCCATCAGCGCCATGGAGGCCACCA TCACGGAGCGGGGCATCACCAGCCGCCACCTGCTGATTGGGCTGCCTTCTGGAGCGATTC TCTCCCTTCCTAAGGCCTTGCTGGATCCCCGCCGCCCCGAGATCCCAACAGAACAAAGCA GAGAGGAGAACCTGATCCCATATTCTCCAGACGTACAGATCCATGCAGAGCGGTTCATCA ACTATAACCAGACAGTTTCTCGAATGAGAGGGATCTACACAGCTCCCTCAGGCCTGGAGT CTACTTGTTTGGTGGTGGCCTACGGCTTGGACATTTACCAGACTCGAGTCTACCCATCCA AACAGTTTGACGTCTTGAAGGATGACTACGACTACGTGCTCATCAGCAGCGTCCTCTTTG GCCTGGTCTTTGCCACCATGATCACTAAGAGACTGGCCCAGGTGAAGCTCCTGAACCGTG CCTGGCGGTAGAGACCTGAGACCCACTGCCAGAGGCCAGAGAGGAGTGAGGGTCAGCTCA GAGGCTCCAGCTGCAGCTGACATCACGGGGAGGATGAGCCTTGGGCACTCATCTCGGTTG AGAGTTGGGGGAAGAAGTTAGACTCTGGCGGAGACTCCTTTTGCGATGCGTCTGATGCGG CATCATCGGCGGGGGATGAAGGCTGAACTGTCCCCCACCTGAGACCTCAAAGCATCTTGG ACTTTGCCTTGGAGCCCCAAGGCCATTGCCCTGTTCCCTTTCTGTGCCCATCCGTGAATG CTGGTGTTTGATAAGACCTCCAGCAGAGTGTTCTGTGGGAGGCCTGTTTAAATGGATTTG GGTTTGCCTTCCATTTCCCAGGTTGATCTAGAAATCTTTCTGATTGTTTCCCTGCTCCCT GCTTCAAAGTCAGAAGGGAACTCTCACCGACGACTCCGCCTTCTAGGGGAGAAAGAAGAT CTGTCCTTAGCTGAGGTTCGAGGACGGCTCCAGCCTCTCATGGCTTCTCTCCAAAGGTCT ACGAATCTATCTCTGGTGTCAGAACTTCTTTCACCTAAGCCTCCAGTTTCAGGTTCCCAT TCGCCCAGTCTTAGATTCGGATTATCAAGAGCCAAGTATGTTATAGTGCCTTGGTTTGTT GGTCAGTGTCCATGCAGCTGGGGCCTTTTAAACAGTGCTGAATTATGTGAACCTCGAATT GGGTTCAAGGGAAGAAGGCAAATCTCCCCGTTTCACAGTCCTCAGAATCTCTCACTTCAC CCAAATCAGCTTCGAACCTAATTAGAGAAGGTTGTCCTTAAGAACCTCCTTATTTATTTT TAGTTGTAAATGAATGTGTGGGTTACTGTATTTTCTCTGAAAAACGAGCAGATTTTAACT GATCTTTACAAAAGGAAGGGAGAAAAGGGTAGGGGGAAGGAAACTGGCATCTTGTGGCTG TCGCGTTGCTGACTGGCTGGGCTGTTGTCTCTGCTACAGACTAAAAGTGTCCTAAAGAGT TCCCTTGTTCATGGATTTGGGGAATGATGGGGGTTTTCTTTACTGGGAAGAATGCAATAC ACACAGACCCCTGTTGGAAGAGAAGTACATTTACATGTCTGAATAAAGTGAGCGACAAAT GACAAAAAAAAAAACCTGCAACCTCTCGGTTACCAGTCGGGTTCGTTAACTCCTGAGCCA TGACGGGAACTCCTGAGTGTACTATTTTAATTGGGAAACATGCCAATTTAATCAGACAAG AGTGATTTTATTTATTTATTTTACTATTACTATTGTTTAAGAGCCACACCCACGGCATAT GGAGGTTCTCAGGCTACGGGTCAAATTGGAGCTGCAGCTGCCGGCTTGCACCACACCCAC AGCGGGGCAGGATTCAAGCCACATCTTTGAACCACACATGGCAATGCCGGATCCTTGGCC CACTGAGCCGGGCCAGGGATCAAAACCTCATCATGGATGCTAGTCTGGTTCCTTACCACT AAGCCACAGCGGGAATTCCAAGAGTGGTATTATTTGAAAAACAAATATTTTCCTTCCTGT GGTCATATGTTGATGGTAGAGAAGAGAAACAAGAATAATTTTAAGATAAAATTGTGAAAT TGATTTTAAGGAAGGAATGAACATCTGAGTATCTCCAGAAAAAACAGGCATCCGTTCATC ATGACTTAAAGCGTGTTGTATTTAAAGTGACTTGGGAGGAGTTCTGTGGTGCAGCAGGTT GAGGGTCTGGCATTTGCCACTGTA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTTTCCCGGCCACTCGGAATGTCCTGCGGCAGCTCCATGAACTCGCCCCTTCCATCTTCT TCTATTTGGTGGATGCGGAACAGGGACGGCTGTGTGGCTATCGACTGCGAAAGGACCTCA CCACTGAGCTGAGCTGGGAGCTGACTATCCCCCCGGAGGTACAGCGCATCGTCACGGTGA AGGGGAAGCGCAGCAGCGAGCACGTCCACTCCCAGGGCCGCGTGATGGGGGACCGCAGCG TGCTCTACAAGAGCCTGAACCCCAACCTGCTGGCCGTGGTGACGGAGAGCACAGATGTTC ACCACGAACGCACTTTCATCGGCATCTTCCTCGTGGACGGTGTCACCGGGCGCATCATCC ACTCGTCCGTGCAGAGGAAGGCCAGGGGCCCCGTCCACATCGTGCACTCGGAGAACTGGG TGGTGTACCAGTACTGGAACACCAAGGCCCGGCGCAACGAGTTCACCGCGCTGGAGCTCT ATGAGGGCACCGAGCAGTACAACGCCACCGCCTTCAGCTCCCTGGACCGCCCTCAGCTGC CCCAGGTGCTCCAGCAGTCCTACATCTTCCCATCCCCCATCAGCGCCATGGAGGCCACCA TCACGGAGCGGGGCATCACCAGCCGCCACCTGCTGATTGGGCTGCCTTCTGGAGCGATTC TCTCCCTTCCTAAGGCCTTGCTGGATCCCCGCCGCCCCGAGATCCCAACAGAACAAAGCA GAGAGGAGAACCTGATCCCATATTCTCCAGACGTACAGATCCATGCAGAGCGGTTCATCA ACTATAACCAGACAGTTTCTCGAATGAGAGGGATCTACACAGCTCCCTCAGGCCTGGAGT CTACTTGTTTGGTGGTGGCCTACGGCTTGGACATTTACCAGACTCGAGTCTACCCATCCA AACAGTTTGACGTCTTGAAGGATGACTACGACTACGTGCTCATCAGCAGCGTCCTCTTTG GCCTGGTCTTTGCCACCATGATCACTAAGAGACTGGCCCAGGTGAAGCTCCTGAACCGTG CCTGGCGGTAGAGACCTGAGACCCACTGCCAGAGGCCAGAGAGGAGTGAGGGTCAGCTCA GAGGCTCCAGCTGCAGCTGACATCACGGGGAGGATGAGCCTTGGGCACTCATCTCGGTTG AGAGTTGGGGGAAGAAGTTAGACTCTGGCGGAGACTCCTTTTGCGATGCGTCTGATGCGG CATCATCGGCGGGGGATGAAGGCTGAACTGTCCCCCACCTGAGACCTCAAAGCATCTTGG ACTTTGCCTTGGAGCCCCAAGGCCATTGCCCTGTTCCCTTTCTGTGCCCATCCGTGAATG CTGGTGTTTGATAAGACCTCCAGCAGAGTGTTCTGTGGGAGGCCTGTTTAAATGGATTTG GGTTTGCCTTCCATTTCCCAGGTTGATCTAGAAATCTTTCTGATTGTTTCCCTGCTCCCT GCTTCAAAGTCAGAAGGGAACTCTCACCGACGACTCCGCCTTCTAGGGGAGAAAGAAGAT CTGTCCTTAGCTGAGGTTCGAGGACGGCTCCAGCCTCTCATGGCTTCTCTCCAAAGGTCT ACGAATCTATCTCTGGTGTCAGAACTTCTTTCACCTAAGCCTCCAGTTTCAGGTTCCCAT TCGCCCAGTCTTAGATTCGGATTATCAAGAGCCAAGTATGTTATAGTGCCTTGGTTTGTT GGTCAGTGTCCATGCAGCTGGGGCCTTTTAAACAGTGCTGAATTATGTGAACCTCGAATT GGGTTCAAGGGAAGAAGGCAAATCTCCCCGTTTCACAGTCCTCAGAATCTCTCACTTCAC CCAAATCAGCTTCGAACCTAATTAGAGAAGGTTGTCCTTAAGAACCTCCTTATTTATTTT TAGTTGTAAATGAATGTGTGGGTTACTGTATTTTCTCTGAAAAACGAGCAGATTTTAACT GATCTTTACAAAAGGAAGGGAGAAAAGGGTAGGGGGAAGGAAACTGGCATCTTGTGGCTG TCGCGTTGCTGACTGGCTGGGCTGTTGTCTCTGCTACAGACTAAAAGTGTCCTAAAGAGT TCCCTTGTTCATGGATTTGGGGAATGATGGGGGTTTTCTTTACTGGGAAGAATGCAATAC ACACAGACCCCTGTTGGAAGAGAAGTACATTTACATGTCTGAATAAAGTGAGCGACAAAT GACAAAAAAAAAAACCTGCAACCTCTCGGTTACCAGTCGGGTTCGTTAACTCCTGAGCCA TGACGGGAACTCCTGAGTGTACTATTTTAATTGGGAAACATGCCAATTTAATCAGACAAG AGTGATTTTATTTATTTATTTTACTATTACTATTGTTTAAGAGCCACACCCACGGCATAT GGAGGTTCTCAGGCTACGGGTCAAATTGGAGCTGCAGCTGCCGGCTTGCACCACACCCAC AGCGGGGCAGGATTCAAGCCACATCTTTGAACCACACATGGCAATGCCGGATCCTTGGCC CACTGAGCCGGGCCAGGGATCAAAACCTCATCATGGATGCTAGTCTGGTTCCTTACCACT AAGCCACAGCGGGAATTCCAAGAGTGGTATTATTTGAAAAACAAATATTTTCCTTCCTGT GGTCATATGTTGATGGTAGAGAAGAGAAACAAGAATAATTTTAAGATAAAATTGTGAAAT TGATTTTAAGGAAGGAATGAACATCTGAGTATCTCCAGAAAAAACAGGCATCCGTTCATC ATGACTTAAAGCGTGTTGTATTTAAAGTGACTTGGGAGGAGTTCTGTGGTGCAGCAGGTT GAGGGTCTGGCATTTGCCACTGTA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1264-1378, - strand, RNAz p=0.728829 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1264-1378, - strand, RNAz p=0.728829 |
Aligned organism(s): 44 entry(ies) | More info |
Aligned organism(s): 44 entry(ies) | Help | Less info |
1-114, gnl|bosTau2|chr2 (61155050-61154937) | |
1-114, gnl|canFam2|chr2 (82276152-82275991) | |
1-114, gnl|danRer3|chr23 (23375701-23375846) | |
1-114, gnl|dasNov1|scaffold_46896 (699-854) | |
1-114, gnl|echTel1|scaffold_277381 (34174-34331) | |
1-114, gnl|fr1|chrUn (192739847-192739980) | |
1-114, gnl|galGal2|chr21 (4485918-4486077) | |
1-114, gnl|hg17|chr1 (19302631-19302791) | |
1-114, gnl|Hg17|chr1 (19302756-19302643) | |
1-114, gnl|loxAfr1|scaffold_12587 (15033-15190) | |
1-114, gnl|mm7|chr4 (138745667-138745509) | |
1-114, gnl|Mm7|chr4 (138745542-138745655) | |
1-114, gnl|monDom2|scaffold_90 (323050-323215) | |
1-114, gnl|oryCun1|scaffold_173449 (58426-58592) | |
1-114, gnl|panTro1|chr1_random (36904136-36903976) | |
1-114, gnl|rheMac2|chr1 (21888753-21888913) | |
1-114, gnl|rn3|chr5 (158177893-158177731) | |
1-114, gnl|tetNig1|chr9 (1251694-1251558) | |
1-114, gnl|xenTro1|scaffold_1498 (63623-63477) | |
250-421, gnl|bosTau2|chr2 (61150634-61150463) | |
250-421, gnl|canFam2|chr2 (82283294-82283082) | |
250-421, gnl|danRer3|chr23 (23375201-23375409) | |
250-421, gnl|dasNov1|scaffold_64741 (3671-3871) | |
250-421, gnl|echTel1|scaffold_312688 (36106-35902) | |
250-421, gnl|fr1|chrUn (192738574-192738766) | |
250-421, gnl|galGal2|chr21 (4485069-4485270) | |
250-421, gnl|hg17|chr1 (19295188-19295389) | |
250-421, gnl|Hg17|chr1 (19295371-19295200) | |
250-421, gnl|loxAfr1|scaffold_95271 (259-463) | |
250-421, gnl|mm7|chr4 (138749548-138749349) | |
250-421, gnl|Mm7|chr4 (138749363-138749534) | |
250-421, gnl|monDom2|scaffold_90 (316137-316338) | |
250-421, gnl|oryCun1|scaffold_173449 (51166-51367) | |
250-421, gnl|panTro1|chr1_random (36911584-36911383) | |
250-421, gnl|rheMac2|chr1 (21881467-21881668) | |
250-421, gnl|rn3|chr5 (158182297-158182096) | |
250-421, gnl|tetNig1|chr9 (1252580-1252386) | |
250-421, gnl|xenTro1|scaffold_1498 (65499-65302) | |
851-1378, gnl|bosTau2|chr2 (61147033-61146498) | |
851-1378, gnl|Hg17|chr1 (19291283-19290830) | |
1696-2165, gnl|bosTau2|chr2 (61145879-61145397) | |
1696-2165, gnl|Hg17|chr1 (19290366-19289887) | |
2633-2738, gnl|bosTau2|chr2 (61144931-61144823) | |
2633-2738, gnl|Hg17|chr1 (19289650-19289556) |
Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-114, gnl|bosTau2|chr2 (61155050-61154937) | |
1-114, gnl|canFam2|chr2 (82276152-82275991) | |
1-114, gnl|danRer3|chr23 (23375701-23375846) | |
1-114, gnl|dasNov1|scaffold_46896 (699-854) | |
1-114, gnl|echTel1|scaffold_277381 (34174-34331) | |
1-114, gnl|fr1|chrUn (192739847-192739980) | |
1-114, gnl|galGal2|chr21 (4485918-4486077) | |
1-114, gnl|hg17|chr1 (19302631-19302791) | |
1-114, gnl|Hg17|chr1 (19302756-19302643) | |
1-114, gnl|loxAfr1|scaffold_12587 (15033-15190) | |
1-114, gnl|mm7|chr4 (138745667-138745509) | |
1-114, gnl|Mm7|chr4 (138745542-138745655) | |
1-114, gnl|monDom2|scaffold_90 (323050-323215) | |
1-114, gnl|oryCun1|scaffold_173449 (58426-58592) | |
1-114, gnl|panTro1|chr1_random (36904136-36903976) | |
1-114, gnl|rheMac2|chr1 (21888753-21888913) | |
1-114, gnl|rn3|chr5 (158177893-158177731) | |
1-114, gnl|tetNig1|chr9 (1251694-1251558) | |
1-114, gnl|xenTro1|scaffold_1498 (63623-63477) | |
250-421, gnl|bosTau2|chr2 (61150634-61150463) | |
250-421, gnl|canFam2|chr2 (82283294-82283082) | |
250-421, gnl|danRer3|chr23 (23375201-23375409) | |
250-421, gnl|dasNov1|scaffold_64741 (3671-3871) | |
250-421, gnl|echTel1|scaffold_312688 (36106-35902) | |
250-421, gnl|fr1|chrUn (192738574-192738766) | |
250-421, gnl|galGal2|chr21 (4485069-4485270) | |
250-421, gnl|hg17|chr1 (19295188-19295389) | |
250-421, gnl|Hg17|chr1 (19295371-19295200) | |
250-421, gnl|loxAfr1|scaffold_95271 (259-463) | |
250-421, gnl|mm7|chr4 (138749548-138749349) | |
250-421, gnl|Mm7|chr4 (138749363-138749534) | |
250-421, gnl|monDom2|scaffold_90 (316137-316338) | |
250-421, gnl|oryCun1|scaffold_173449 (51166-51367) | |
250-421, gnl|panTro1|chr1_random (36911584-36911383) | |
250-421, gnl|rheMac2|chr1 (21881467-21881668) | |
250-421, gnl|rn3|chr5 (158182297-158182096) | |
250-421, gnl|tetNig1|chr9 (1252580-1252386) | |
250-421, gnl|xenTro1|scaffold_1498 (65499-65302) | |
851-1378, gnl|bosTau2|chr2 (61147033-61146498) | |
851-1378, gnl|Hg17|chr1 (19291283-19290830) | |
1696-2165, gnl|bosTau2|chr2 (61145879-61145397) | |
1696-2165, gnl|Hg17|chr1 (19290366-19289887) | |
2633-2738, gnl|bosTau2|chr2 (61144931-61144823) | |
2633-2738, gnl|Hg17|chr1 (19289650-19289556) |
Expressed library(ies): 23 entry(ies) | More info |
Expressed library(ies): 23 entry(ies) | Help | Less info |
vin (0.332557) | |
cag (0.302389) | |
pty (0.285429) | |
cst (0.280073) | |
nca (0.273748) | |
che (0.272628) | |
ece (0.229305) | |
hea (0.204499) | |
fcc (0.197785) | |
aor (0.195274) | |
gul (0.177588) | |
fty (0.17584) | |
ill (0.175593) | |
rec (0.17307) | |
cki (0.165235) | |
cli (0.152812) | |
ski (0.146735) | |
hyp (0.142837) | |
ret (0.128733) | |
bla (0.124347) | |
eep (0.122564) | |
pgl (0.118483) | |
med (0.116252) |
Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
vin (0.332557) | |
cag (0.302389) | |
pty (0.285429) | |
cst (0.280073) | |
nca (0.273748) | |
che (0.272628) | |
ece (0.229305) | |
hea (0.204499) | |
fcc (0.197785) | |
aor (0.195274) | |
gul (0.177588) | |
fty (0.17584) | |
ill (0.175593) | |
rec (0.17307) | |
cki (0.165235) | |
cli (0.152812) | |
ski (0.146735) | |
hyp (0.142837) | |
ret (0.128733) | |
bla (0.124347) | |
eep (0.122564) | |
pgl (0.118483) | |
med (0.116252) |