Non-Coding RNA Search

Ss1.1-Pig4-TMW8059C17.3

Sequence:


               
               GGCGGAGGGAGGCGGCGGCGGCGAAGGAGGCGGCGGTGGCGGCGGAGGGGGGAAGATGGC
GGCGCCCGTCCTGCTGAGAGTGTCGGTGCCGCGTTGGGAGCGGGTGGCCCGGTATGCAGT
GTGCGCCGCCGGGATCCTGCTCTCCATCTACGCCTACCACGTGGAGCGGGAGAAGGAGCG
GGACCCTGAGCACCGGGCCCTCTGCGACCTGGGCCCCTGGGTGAAGTGCTCCGCCGCCCT
TGCCTCCAGATGGGGTCGAGGATTTGGTCTTTTGGGTTCCATTTTTGGAAAGGATGGTGT
ATTAAACCAGCCAAACAGTGTCTTTGGACTTATATTTTATATATTACAGTTATTACTTGG
CATGACAGCAAGTGCAGTTGCAGCTTTAATCCTCATGACATCCTCCATCATGTCTGTAGT
AGGCTCTTTGTACCTGGCCTACATTCTGTACTTTGTGCTGAAGGAGTTTTGCATCATCTG
CGTCATCACATACGTGCTGAACTTCATTCTTCTTATCATCAACTACAAACGACTAGTTTA
CTTAAATGAGGCCTGGAAACGGCAACTGCAGCCCAAGCAGGACTGACAACCTGACAGACT
CTTAACTGAAGTCCCTTTTTTTCCATTAAGTTTATTTTGCAGCAGTTGTTTTTTTTGTTT
TGTTTGGTTTTGTTTTTTAAATTCTTCACAACAGACACTTTTCCCTAAGAATCTTAAACT
GATTTTTTAAAATCCTGTAAATTAGAAGGGGCCCAGGCTATTTCTGTGTCAATCTTCATT
TTAAAATATGGATACAAAAAAAAAAAAGAGGATACGCCGAGCCAATCAAAGACAAGCTTT
AACTTTACTTTGGAGATGTTTCTGAAATAATAAATTGTAGCCCCAGCCCCTTTCCCTCAA
ATGTAAAGTGAGCAACCATTGCTAGTAATTCTCTAATGTGTATAAATTAAATTTCAGGTA
TAACAAATGTGATCATGACATGAAAATATTTTAGAATAGATACTGTATTAAATATTGCCA
TGTTTACAATATGTAAGATGTTTTTAGCCGATGGATTTAAACATGTAGATTCAATTAGAA
TCCATTTATGTGATATTTGTAAATAAAGGTAGAAATATTGGATCCATCCCTGCAGAACTT
ACTGTACAGTTTAGTTGAAGTGTAGCAATGAAGAATTGTCAGCTCAACGTTGACTGAAGA
AATAGTGAAAATAGTAAGTCCATACAGAGCATCTTGTGAAAAGTACTGACAGCTGTGGGT
CCAGCATTGGCAGCAAAAATAATAGAGTGATTGGTTCCCTTTCATTTCCTTCTTCTGAAA
GGAAGAAACTAAATTTGGACATTGGAGTCAAGCTTATAACTAGTCATACAATTGGGTCAA
TGATAACCTTACAGAATGAGTCATGTGACCAGACTTTTAAGTCCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAGGGAGGCGGCGGCGGCGAAGGAGGCGGCGGTGGCGGCGGAGGGGGGAAGATGGC
GGCGCCCGTCCTGCTGAGAGTGTCGGTGCCGCGTTGGGAGCGGGTGGCCCGGTATGCAGT
GTGCGCCGCCGGGATCCTGCTCTCCATCTACGCCTACCACGTGGAGCGGGAGAAGGAGCG
GGACCCTGAGCACCGGGCCCTCTGCGACCTGGGCCCCTGGGTGAAGTGCTCCGCCGCCCT
TGCCTCCAGATGGGGTCGAGGATTTGGTCTTTTGGGTTCCATTTTTGGAAAGGATGGTGT
ATTAAACCAGCCAAACAGTGTCTTTGGACTTATATTTTATATATTACAGTTATTACTTGG
CATGACAGCAAGTGCAGTTGCAGCTTTAATCCTCATGACATCCTCCATCATGTCTGTAGT
AGGCTCTTTGTACCTGGCCTACATTCTGTACTTTGTGCTGAAGGAGTTTTGCATCATCTG
CGTCATCACATACGTGCTGAACTTCATTCTTCTTATCATCAACTACAAACGACTAGTTTA
CTTAAATGAGGCCTGGAAACGGCAACTGCAGCCCAAGCAGGACTGACAACCTGACAGACT
CTTAACTGAAGTCCCTTTTTTTCCATTAAGTTTATTTTGCAGCAGTTGTTTTTTTTGTTT
TGTTTGGTTTTGTTTTTTAAATTCTTCACAACAGACACTTTTCCCTAAGAATCTTAAACT
GATTTTTTAAAATCCTGTAAATTAGAAGGGGCCCAGGCTATTTCTGTGTCAATCTTCATT
TTAAAATATGGATACAAAAAAAAAAAAGAGGATACGCCGAGCCAATCAAAGACAAGCTTT
AACTTTACTTTGGAGATGTTTCTGAAATAATAAATTGTAGCCCCAGCCCCTTTCCCTCAA
ATGTAAAGTGAGCAACCATTGCTAGTAATTCTCTAATGTGTATAAATTAAATTTCAGGTA
TAACAAATGTGATCATGACATGAAAATATTTTAGAATAGATACTGTATTAAATATTGCCA
TGTTTACAATATGTAAGATGTTTTTAGCCGATGGATTTAAACATGTAGATTCAATTAGAA
TCCATTTATGTGATATTTGTAAATAAAGGTAGAAATATTGGATCCATCCCTGCAGAACTT
ACTGTACAGTTTAGTTGAAGTGTAGCAATGAAGAATTGTCAGCTCAACGTTGACTGAAGA
AATAGTGAAAATAGTAAGTCCATACAGAGCATCTTGTGAAAAGTACTGACAGCTGTGGGT
CCAGCATTGGCAGCAAAAATAATAGAGTGATTGGTTCCCTTTCATTTCCTTCTTCTGAAA
GGAAGAAACTAAATTTGGACATTGGAGTCAAGCTTATAACTAGTCATACAATTGGGTCAA
TGATAACCTTACAGAATGAGTCATGTGACCAGACTTTTAAGTCCAAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49113739|gb|AAH27734.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49113739|gb|AAH27734.2|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               359-1424, gnl|bosTau2|chr25 (23682496-23683564)
               

               
               359-1424, gnl|Hg17|chr7 (64863210-64864266)
               

               
               359-1424, gnl|Mm7|chr5 (129219965-129221001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               359-1424, gnl|bosTau2|chr25 (23682496-23683564)
               

               
               359-1424, gnl|Hg17|chr7 (64863210-64864266)
               

               
               359-1424, gnl|Mm7|chr5 (129219965-129221001)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               lun (0.451467)
               

               
               fat (0.442282)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)
               

               
               fat (0.442282)
               

               
               nje (0.33184)
               

               
               cte (0.29274)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	359-1424, gnl\|bosTau2\|chr25 (23682496-23683564)
	359-1424, gnl\|Hg17\|chr7 (64863210-64864266)
	359-1424, gnl\|Mm7\|chr5 (129219965-129221001)

	lun (0.451467)
	fat (0.442282)
	nje (0.33184)
	cte (0.29274)
	nms (0.213858)
	tes (0.207814)
	sag (0.182715)
	cut (0.169924)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)