Non-Coding RNA Search

Ss1.1-Pig4-TMW8059C23.3

Sequence:


               
               AATTTAAAAAAATTTGTATCTGCTAAGCAGTTTGTTTTGCTTGAGTGGTCTCCTACCACA
CTATCAATATGCCTGTCTCTGACAGGCTCCCTACTTCCTTCTAATGTGCCGTTTTCATCT
GTTAGGAGCTGGGACATGAGATAGCAAGTCTGCTTAGTGTCTCAGGAGGTGGCTGAGCTC
TGGGAGCCATCTGTGAGACAGCTCTCTTCATTGCTCACCACTTTCCTGACAGGTTCACAA
TAATTCTATAGATAATAGAAGTTCTCAGTTAAAGCCCAAGCTAGTGATTGTCTCAGTTGC
CACTAAGTAAAATACTACAAGCTAAGGATGCTGCTAGATTAAGGAAGAGCAATGCACCAA
AGTACAGGGAAGCAAAAACAGACTGTATTTGCACAAGGGTCTTTCGTGCTTTTAAGAAAA
AAGAAGAGTGCAGAGGGAAAAGGACAGTGAAAATCCAGATAGACTTAAGGGTATCTATCT
TTGATGCCATTAAACTTTGTCAATAACCATAAAAATATACACTTAAATTATCACACATGA
TACAAAGACACAGTTTAGTCTCAGTACAGAATAAGATATTACTGAAATTTATAAACATTC
TTAAGAATTTCTCCCATTCAAATTATAATGGAAATTATTATCAAAAGGAAAGTCTCAAAT
TTATCTGTATGCTGCTTTCTTTAGCTATAATGAATTAGTGATAGAAAAATGGGTTTTAGC
AAAAGCTCCAGGGAATAAATCTCAAATGCATACACCTCCTCTATCATATATGTCACTATA
AATGAAAATGCCAGAGATAATTTTTAAAATTTAAATCTGGTCCAAAGTATTTAAAATAGA
CTTTTCAGCTTTCCTAAGTTTTTTCATTTAGAATTCATGGTTTTTACATTACTGGTTGAA
TATGTGAATTTTCTTGTAAAATGCACTGCATCTTCCATTTCCAAACCCTGCTTTCTGATC
AACTTTAGATTCACATTTTCAGGAAATTTGGAGTGTTTCAGAAAAAAATACTAGACACCA
CAAAGTTTTCTCACCAGATTCTGAGGTGCTGTATATTCTTATTATGCTAGACTGTAAGCC
CCTTGAGGGCAGGAACTGTCTTATTTATTCTATTCTATTCCCAGTGCCCAGCAGGATCAA
TAAATTTTTCTTGAATGAATCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTAAAAAAATTTGTATCTGCTAAGCAGTTTGTTTTGCTTGAGTGGTCTCCTACCACA
CTATCAATATGCCTGTCTCTGACAGGCTCCCTACTTCCTTCTAATGTGCCGTTTTCATCT
GTTAGGAGCTGGGACATGAGATAGCAAGTCTGCTTAGTGTCTCAGGAGGTGGCTGAGCTC
TGGGAGCCATCTGTGAGACAGCTCTCTTCATTGCTCACCACTTTCCTGACAGGTTCACAA
TAATTCTATAGATAATAGAAGTTCTCAGTTAAAGCCCAAGCTAGTGATTGTCTCAGTTGC
CACTAAGTAAAATACTACAAGCTAAGGATGCTGCTAGATTAAGGAAGAGCAATGCACCAA
AGTACAGGGAAGCAAAAACAGACTGTATTTGCACAAGGGTCTTTCGTGCTTTTAAGAAAA
AAGAAGAGTGCAGAGGGAAAAGGACAGTGAAAATCCAGATAGACTTAAGGGTATCTATCT
TTGATGCCATTAAACTTTGTCAATAACCATAAAAATATACACTTAAATTATCACACATGA
TACAAAGACACAGTTTAGTCTCAGTACAGAATAAGATATTACTGAAATTTATAAACATTC
TTAAGAATTTCTCCCATTCAAATTATAATGGAAATTATTATCAAAAGGAAAGTCTCAAAT
TTATCTGTATGCTGCTTTCTTTAGCTATAATGAATTAGTGATAGAAAAATGGGTTTTAGC
AAAAGCTCCAGGGAATAAATCTCAAATGCATACACCTCCTCTATCATATATGTCACTATA
AATGAAAATGCCAGAGATAATTTTTAAAATTTAAATCTGGTCCAAAGTATTTAAAATAGA
CTTTTCAGCTTTCCTAAGTTTTTTCATTTAGAATTCATGGTTTTTACATTACTGGTTGAA
TATGTGAATTTTCTTGTAAAATGCACTGCATCTTCCATTTCCAAACCCTGCTTTCTGATC
AACTTTAGATTCACATTTTCAGGAAATTTGGAGTGTTTCAGAAAAAAATACTAGACACCA
CAAAGTTTTCTCACCAGATTCTGAGGTGCTGTATATTCTTATTATGCTAGACTGTAAGCC
CCTTGAGGGCAGGAACTGTCTTATTTATTCTATTCTATTCCCAGTGCCCAGCAGGATCAA
TAAATTTTTCTTGAATGAATCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-112, - strand, RNAz p=0.548546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-112, - strand, RNAz p=0.548546

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1042, gnl|bosTau2|chr8 (29053311-29054353)
               

               
               1-1042, gnl|Hg17|chr9 (37856463-37857528)
               

               
               1-1042, gnl|Mm7|chr4 (45392326-45393421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1042, gnl|bosTau2|chr8 (29053311-29054353)
               

               
               1-1042, gnl|Hg17|chr9 (37856463-37857528)
               

               
               1-1042, gnl|Mm7|chr4 (45392326-45393421)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sme (0.305437)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               fli (0.202881)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               ldo (0.0970026)

	1-1042, gnl\|bosTau2\|chr8 (29053311-29054353)
	1-1042, gnl\|Hg17\|chr9 (37856463-37857528)
	1-1042, gnl\|Mm7\|chr4 (45392326-45393421)

	sme (0.305437)
	tra (0.246184)
	fli (0.202881)
	fhi (0.169578)
	lun (0.150489)
	liv (0.146284)
	lin (0.145603)
	nca (0.136874)
	lyg (0.133103)
	ldo (0.0970026)