Non-Coding RNA Search

Ss1.1-Pig4-TMW8059C24.3

Sequence:


               
               GGTTTTTGAGGCCTTGGTTTGGACCACCATGGTCTGTAAAACTGTCTTTTCTGCCTTCAT
TCTGCCCCTAAGTCCCTAAAACTGCTGCTGCCTGTGTGATTTTCAACACAGCAGCACAGT
GCAATCTATGCAAGGACATAGAGGTGGTGGCCATAGTAGCATAGAAGGAGGTCACTCCCA
CCCTGTTCAGGAGAGTGAGCAGAGCTCCTAATTCTTCTGCCCTTGGGGTGGAAGATAGAG
CAGGTGGGCTGGCTGCTAAGGATCCTGAGCAGAGCCAAATCAAAGATCACAGTGGGGCCT
TAGGTGAGAAAGGTCTTGTGAAGGTGAGTTTTACCCTGGGTTTATAAAACTCTGCATCTT
CCCAAGGAGGCAGGAGAGATGAAGTGGCGGGGGGGCAGAGTGACTGAGACTCTTTGCTCA
CAAACATGATTTTCACAAGACTGGCCTCTTCCCTGCTGTCACATAAGTATAGGTTAAACT
GGCTTGAGAATCTGTCTCTTCCTGATCAGCACACTCTAGGGCTGTGCTGTCTAAAACAGT
ATGCAGCTATCTAAATATAAACTGAAAATAGTTTAAATAAAATCAAAAGTTCAGTCCCCA
GTCATAAAGCCACATGGCCCCTGAGTTGCACAGTGCAAATGAACAAGCTTTCCATCAGCA
TGAAAGGACTGTTGGAATGTGCTTCTCTGGGATTCCAGTGATGATTCTGTAGGTGCAGTT
TTGCTCAGATATCCCTGGGAAGCATCTCTGCAAGCACCTGGGGGGAGACTTGATGTTTCC
CAGACACAGTGGTCCAGGCTATGGGGACTGCAGTTACTCCCCTTGGCTTTCTTCTCAGCA
CAGCAGTGAACTAGGTCTGCAGGGAAGTGGTGTGTTTCCCAAGTGCAACGGATAGCAGGT
CTCTACATATAAAACCATGGTATTACTTAAAGAAAGCTTGTCCTCAGGAAAACAACTCTC
ACAAATCAACAAGAAATACACTGACAATTTGGTGACAAAAAGAGGCAAGGATATGAACAA
ATAGTTCACAGAAAAGGTTACCTAGAAAACAATAACAATCATGCGGGAAAGAAATTGGGA
AGAGTGAGAAGAAACTTTATAGTATTTCCCCTGTGGTGTTTGAATTTTAAGCCAGGTAAA
TGGATTTAGTACTTGTCTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTTTGAGGCCTTGGTTTGGACCACCATGGTCTGTAAAACTGTCTTTTCTGCCTTCAT
TCTGCCCCTAAGTCCCTAAAACTGCTGCTGCCTGTGTGATTTTCAACACAGCAGCACAGT
GCAATCTATGCAAGGACATAGAGGTGGTGGCCATAGTAGCATAGAAGGAGGTCACTCCCA
CCCTGTTCAGGAGAGTGAGCAGAGCTCCTAATTCTTCTGCCCTTGGGGTGGAAGATAGAG
CAGGTGGGCTGGCTGCTAAGGATCCTGAGCAGAGCCAAATCAAAGATCACAGTGGGGCCT
TAGGTGAGAAAGGTCTTGTGAAGGTGAGTTTTACCCTGGGTTTATAAAACTCTGCATCTT
CCCAAGGAGGCAGGAGAGATGAAGTGGCGGGGGGGCAGAGTGACTGAGACTCTTTGCTCA
CAAACATGATTTTCACAAGACTGGCCTCTTCCCTGCTGTCACATAAGTATAGGTTAAACT
GGCTTGAGAATCTGTCTCTTCCTGATCAGCACACTCTAGGGCTGTGCTGTCTAAAACAGT
ATGCAGCTATCTAAATATAAACTGAAAATAGTTTAAATAAAATCAAAAGTTCAGTCCCCA
GTCATAAAGCCACATGGCCCCTGAGTTGCACAGTGCAAATGAACAAGCTTTCCATCAGCA
TGAAAGGACTGTTGGAATGTGCTTCTCTGGGATTCCAGTGATGATTCTGTAGGTGCAGTT
TTGCTCAGATATCCCTGGGAAGCATCTCTGCAAGCACCTGGGGGGAGACTTGATGTTTCC
CAGACACAGTGGTCCAGGCTATGGGGACTGCAGTTACTCCCCTTGGCTTTCTTCTCAGCA
CAGCAGTGAACTAGGTCTGCAGGGAAGTGGTGTGTTTCCCAAGTGCAACGGATAGCAGGT
CTCTACATATAAAACCATGGTATTACTTAAAGAAAGCTTGTCCTCAGGAAAACAACTCTC
ACAAATCAACAAGAAATACACTGACAATTTGGTGACAAAAAGAGGCAAGGATATGAACAA
ATAGTTCACAGAAAAGGTTACCTAGAAAACAATAACAATCATGCGGGAAAGAAATTGGGA
AGAGTGAGAAGAAACTTTATAGTATTTCCCCTGTGGTGTTTGAATTTTAAGCCAGGTAAA
TGGATTTAGTACTTGTCTTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-393, + strand, RNAz p=0.99714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-393, + strand, RNAz p=0.99714

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               277-604, gnl|bosTau2|chr2 (44428184-44427838)
               

               
               277-604, gnl|Hg17|chr2 (119842943-119843658)
               


               
               615-1164, gnl|bosTau2|chr2 (44427804-44427232)
               

               
               615-1164, gnl|Hg17|chr2 (119843704-119844255)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-604, gnl|bosTau2|chr2 (44428184-44427838)
               

               
               277-604, gnl|Hg17|chr2 (119842943-119843658)
               


               
               615-1164, gnl|bosTau2|chr2 (44427804-44427232)
               

               
               615-1164, gnl|Hg17|chr2 (119843704-119844255)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.281492)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)

	277-604, gnl\|bosTau2\|chr2 (44428184-44427838)
	277-604, gnl\|Hg17\|chr2 (119842943-119843658)

	615-1164, gnl\|bosTau2\|chr2 (44427804-44427232)
	615-1164, gnl\|Hg17\|chr2 (119843704-119844255)