Ss1.1-Pig4-TMW8059D10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGATCAAGTGCCTGGCCACAGAGAAGGTCAAGTACACCCAGCGCGTGGACTATATCA TGCAGCTGCCTGTGCCCATGGACGCGGCCCTGAACAAAGAGGAGCTCCTGGAGTATGAAG AGAAGAAGCGGCAAGCCGAGGAGGAGAAGCTGCCACTGCCAGAACTGGTTCGGGCACAGG TGCCCTTCAGCTCCTGCCTGGAGGCCTATGGGGCCCCTGAGCAGGTGGATGACTTCTGGA GCACTGCCCTGCAGGCCAAGTCCGTGGCCGTCAAGACCACACGATTTGCCTCATTCCCCG ACTACCTGGTCATCCAGATCAAGAAGTTCACCTTCGGCTTAGACTGGGTGCCCAAGAAAC TGGATGTGTCCATCGAGATGCCCGAGGAGCTAGACATCTCCCAGCTGAGGGGCACAGGGC TGCAGCCTGGAGAGGAGGAGCTGCCCGACATTGCCCCACCCCTGGTCACTCCGGATGAGC CCAAAGCGCCCATGTTGGATGAATCGGTTATCATCCAGCTGGTGGAGATGGGCTTCCCGA TGGACGCCTGCCGCAAAGCCGTCTACTACACGGGCAACAGCGGGGCCGAGGCCGCCATGA ACTGGGTCATGTCGCACATGGACGATCCAGATTTCGCGAACCCCCTCATCCTGCCTGGCT CCAGCGGGCCCGGCTCCACAAGCGCAGCAGCTGACCCCCCACCAGAGGACTGCGTGACCA CCATTGTCTCCATGGGCTTCTCCCGGGACCAGGCCCTGAAAGCTCTGCGGGCCACGAACA ATAGTTTAGAACGGGCTGTGGACTGGATCTTCAGTCACATTGATGACCTGGACGCAGAGG CTGCCATGGACATCTCGGAGGGCCGCTCCGCAGCCGACTCCATCTCCGAGTCCATACCAG TGGGACCTAAAGTCCGGGATGGTCCTGGAAAGTATCAGCTCTTCGCCTTCATTAGTCACA TGGGCACGTCAACCATGTGTGGTCACTATGTCTGCCACATCAAGAAGGAAGGCAGATGGG TGATCTACAATGACCAGAAAGTGTGTGCCTCTGAGAAGCCGCCCAAGGACCTGGGCTACA TCTACTTCTACCAGAGAGTGGCCAGCTAAGAGCCCACCCTGAGCCCTTAACCACTGAGGG CAGGGGACAGACCACCCGGCATGAGGGATGGATGTCAGCCCCCCTGCTCCCGTACCCTTT TCCTTTTTGTGTCCCCAGCAGCAGGGAAGAAGCTAGAGGCTATGAGAGAATGGCCAAGCG AAGTGGGGGGGGCACTCTGGAGACTTTGGGGATGGAGCAGGAAGGGGAACGGGAGGGGCC GGCTGCCTGTCTGTAAGGAGACTGTTGCTTTCCTGCCCTTGACCCCACAGCGCTCTGCTT CTCTGTGATCCTGCTGGCCCAGCGTGGAGCGGGCTCGTTTGTTTGTGTGGCGTGGGTATA GCTTTGTGCAGCCTCTTCCACAGGAGGGGGCTTCTGTGCCTCCCCTCCCCCGTTGTGTGT GCTCCCCGTGTGGTTGGGCAAGGAGGGATCTGAGGGAAATGGGGACCCCCCTCGCCCTCC TGCCTCAGTCTTTTCCCCACCCTGTCTCTCCCCTGTCCTTCTGGAAAATGCCAAAATACA GGATGTGAATAAAAGTACAGTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGATCAAGTGCCTGGCCACAGAGAAGGTCAAGTACACCCAGCGCGTGGACTATATCA TGCAGCTGCCTGTGCCCATGGACGCGGCCCTGAACAAAGAGGAGCTCCTGGAGTATGAAG AGAAGAAGCGGCAAGCCGAGGAGGAGAAGCTGCCACTGCCAGAACTGGTTCGGGCACAGG TGCCCTTCAGCTCCTGCCTGGAGGCCTATGGGGCCCCTGAGCAGGTGGATGACTTCTGGA GCACTGCCCTGCAGGCCAAGTCCGTGGCCGTCAAGACCACACGATTTGCCTCATTCCCCG ACTACCTGGTCATCCAGATCAAGAAGTTCACCTTCGGCTTAGACTGGGTGCCCAAGAAAC TGGATGTGTCCATCGAGATGCCCGAGGAGCTAGACATCTCCCAGCTGAGGGGCACAGGGC TGCAGCCTGGAGAGGAGGAGCTGCCCGACATTGCCCCACCCCTGGTCACTCCGGATGAGC CCAAAGCGCCCATGTTGGATGAATCGGTTATCATCCAGCTGGTGGAGATGGGCTTCCCGA TGGACGCCTGCCGCAAAGCCGTCTACTACACGGGCAACAGCGGGGCCGAGGCCGCCATGA ACTGGGTCATGTCGCACATGGACGATCCAGATTTCGCGAACCCCCTCATCCTGCCTGGCT CCAGCGGGCCCGGCTCCACAAGCGCAGCAGCTGACCCCCCACCAGAGGACTGCGTGACCA CCATTGTCTCCATGGGCTTCTCCCGGGACCAGGCCCTGAAAGCTCTGCGGGCCACGAACA ATAGTTTAGAACGGGCTGTGGACTGGATCTTCAGTCACATTGATGACCTGGACGCAGAGG CTGCCATGGACATCTCGGAGGGCCGCTCCGCAGCCGACTCCATCTCCGAGTCCATACCAG TGGGACCTAAAGTCCGGGATGGTCCTGGAAAGTATCAGCTCTTCGCCTTCATTAGTCACA TGGGCACGTCAACCATGTGTGGTCACTATGTCTGCCACATCAAGAAGGAAGGCAGATGGG TGATCTACAATGACCAGAAAGTGTGTGCCTCTGAGAAGCCGCCCAAGGACCTGGGCTACA TCTACTTCTACCAGAGAGTGGCCAGCTAAGAGCCCACCCTGAGCCCTTAACCACTGAGGG CAGGGGACAGACCACCCGGCATGAGGGATGGATGTCAGCCCCCCTGCTCCCGTACCCTTT TCCTTTTTGTGTCCCCAGCAGCAGGGAAGAAGCTAGAGGCTATGAGAGAATGGCCAAGCG AAGTGGGGGGGGCACTCTGGAGACTTTGGGGATGGAGCAGGAAGGGGAACGGGAGGGGCC GGCTGCCTGTCTGTAAGGAGACTGTTGCTTTCCTGCCCTTGACCCCACAGCGCTCTGCTT CTCTGTGATCCTGCTGGCCCAGCGTGGAGCGGGCTCGTTTGTTTGTGTGGCGTGGGTATA GCTTTGTGCAGCCTCTTCCACAGGAGGGGGCTTCTGTGCCTCCCCTCCCCCGTTGTGTGT GCTCCCCGTGTGGTTGGGCAAGGAGGGATCTGAGGGAAATGGGGACCCCCCTCGCCCTCC TGCCTCAGTCTTTTCCCCACCCTGTCTCTCCCCTGTCCTTCTGGAAAATGCCAAAATACA GGATGTGAATAAAAGTACAGTGGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 158-1348, - strand, RNAz p=0.986074 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-1348, - strand, RNAz p=0.986074 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 98-275, gnl|bosTau2|chr5 (60400700-60400523) | |
| 98-275, gnl|Hg17|chr12 (6840866-6841043) | |
| 98-275, gnl|Mm7|chr6 (124846554-124846377) | |
| 480-628, gnl|bosTau2|chr5 (60398342-60398194) | |
| 480-628, gnl|Hg17|chr12 (6843248-6843396) | |
| 480-628, gnl|Mm7|chr6 (124844429-124844281) | |
| 772-930, gnl|bosTau2|chr5 (60397746-60397588) | |
| 772-930, gnl|canFam2|chr27 (41189040-41188925) | |
| 772-930, gnl|canFam2|chr27 (41189101-41188919) | |
| 772-930, gnl|danRer3|chr16 (6442584-6442422) | |
| 772-930, gnl|dasNov1|scaffold_5223 (52442-52561) | |
| 772-930, gnl|dasNov1|scaffold_5223 (52408-52567) | |
| 772-930, gnl|echTel1|scaffold_319441 (46575-46457) | |
| 772-930, gnl|echTel1|scaffold_319441 (46639-46451) | |
| 772-930, gnl|fr1|chrUn (75044018-75044189) | |
| 772-930, gnl|galGal2|chr1 (71360806-71360981) | |
| 772-930, gnl|hg17|chr12 (6844118-6844307) | |
| 772-930, gnl|Hg17|chr12 (6844142-6844300) | |
| 772-930, gnl|hg17|chr14 (95555559-95555677) | |
| 772-930, gnl|loxAfr1|scaffold_47704 (4905-4744) | |
| 772-930, gnl|mm7|chr6 (124843829-124843710) | |
| 772-930, gnl|mm7|chr6 (124843886-124843704) | |
| 772-930, gnl|Mm7|chr6 (124843867-124843709) | |
| 772-930, gnl|monDom2|scaffold_31 (15342094-15342213) | |
| 772-930, gnl|monDom2|scaffold_31 (15342028-15342219) | |
| 772-930, gnl|oryCun1|scaffold_205383 (151986-151868) | |
| 772-930, gnl|oryCun1|scaffold_205383 (152021-151866) | |
| 772-930, gnl|panTro1|chr10 (7380980-7381169) | |
| 772-930, gnl|panTro1|chr15 (96015311-96015429) | |
| 772-930, gnl|rheMac2|chr11 (7046271-7046460) | |
| 772-930, gnl|rheMac2|chr7 (159258637-159258755) | |
| 772-930, gnl|rn3|chr4 (161185159-161185040) | |
| 772-930, gnl|rn3|chr4 (161185216-161185034) | |
| 772-930, gnl|tetNig1|chr8 (9129340-9129498) | |
| 772-930, gnl|xenTro1|scaffold_811 (484159-483988) | |
| 1013-1437, gnl|bosTau2|chr5 (60396632-60396211) | |
| 1013-1437, gnl|Hg17|chr12 (6845406-6845844) | |
| 1013-1437, gnl|Mm7|chr6 (124842053-124841618) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-275, gnl|bosTau2|chr5 (60400700-60400523) | |
| 98-275, gnl|Hg17|chr12 (6840866-6841043) | |
| 98-275, gnl|Mm7|chr6 (124846554-124846377) | |
| 480-628, gnl|bosTau2|chr5 (60398342-60398194) | |
| 480-628, gnl|Hg17|chr12 (6843248-6843396) | |
| 480-628, gnl|Mm7|chr6 (124844429-124844281) | |
| 772-930, gnl|bosTau2|chr5 (60397746-60397588) | |
| 772-930, gnl|canFam2|chr27 (41189040-41188925) | |
| 772-930, gnl|canFam2|chr27 (41189101-41188919) | |
| 772-930, gnl|danRer3|chr16 (6442584-6442422) | |
| 772-930, gnl|dasNov1|scaffold_5223 (52442-52561) | |
| 772-930, gnl|dasNov1|scaffold_5223 (52408-52567) | |
| 772-930, gnl|echTel1|scaffold_319441 (46575-46457) | |
| 772-930, gnl|echTel1|scaffold_319441 (46639-46451) | |
| 772-930, gnl|fr1|chrUn (75044018-75044189) | |
| 772-930, gnl|galGal2|chr1 (71360806-71360981) | |
| 772-930, gnl|hg17|chr12 (6844118-6844307) | |
| 772-930, gnl|Hg17|chr12 (6844142-6844300) | |
| 772-930, gnl|hg17|chr14 (95555559-95555677) | |
| 772-930, gnl|loxAfr1|scaffold_47704 (4905-4744) | |
| 772-930, gnl|mm7|chr6 (124843829-124843710) | |
| 772-930, gnl|mm7|chr6 (124843886-124843704) | |
| 772-930, gnl|Mm7|chr6 (124843867-124843709) | |
| 772-930, gnl|monDom2|scaffold_31 (15342094-15342213) | |
| 772-930, gnl|monDom2|scaffold_31 (15342028-15342219) | |
| 772-930, gnl|oryCun1|scaffold_205383 (151986-151868) | |
| 772-930, gnl|oryCun1|scaffold_205383 (152021-151866) | |
| 772-930, gnl|panTro1|chr10 (7380980-7381169) | |
| 772-930, gnl|panTro1|chr15 (96015311-96015429) | |
| 772-930, gnl|rheMac2|chr11 (7046271-7046460) | |
| 772-930, gnl|rheMac2|chr7 (159258637-159258755) | |
| 772-930, gnl|rn3|chr4 (161185159-161185040) | |
| 772-930, gnl|rn3|chr4 (161185216-161185034) | |
| 772-930, gnl|tetNig1|chr8 (9129340-9129498) | |
| 772-930, gnl|xenTro1|scaffold_811 (484159-483988) | |
| 1013-1437, gnl|bosTau2|chr5 (60396632-60396211) | |
| 1013-1437, gnl|Hg17|chr12 (6845406-6845844) | |
| 1013-1437, gnl|Mm7|chr6 (124842053-124841618) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| hyp (0.42851) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| eli (0.151814) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.42851) | |
| fhi (0.339155) | |
| cov (0.264306) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| eli (0.151814) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| eje (0.0988338) |