Non-Coding RNA Search

Ss1.1-Pig4-TMW8059D18.5.5

Sequence:


               
               CCGCCCTGGAGACCCTGGGCCGGCGGTGGGCGCAGCTGCCTCTCCGCGTTTGCCTGTCCG
TCTTTGTGTCTGTCTCTGTGTCTGTCTGGCTGTCTCCGAGCTTGCCTCCACTTCTAGAAC
TAAGCCTCCGGGACACCGACATCCCGCGAACCCTCCCCCGTCTCCCATGGCAGGCTACAT
ACCCCCCAAGGGCTACGCCCCTTCGCCCCCACCTCCCTATCCTGTGACCGCTGGGTACCC
GGAGCCGGCGCTGCATCCTGGGCCCGGGCCCAGCCAGGCGCCAGTGCCTGCCCACGTGCC
TGCCCCAGCGCCCGGCTTTGCTCTCTTCCCCTCGCCCGGCCCTGCGGCCCCGGGGCCAGC
TGCCCCCTTCTTGCCAGTGCCCGGGGTGCCTTTCGGCCTCGAATTCCTGGTGCAGATTGA
TCAGATCTTGATTCACCAGAAAGCTGAGCGGGTGGAAACGCTCCTGGGCTGGGAGACCTG
TAACCGGTACGAACTGCGCTCGGGGGCCGGACAGCCCCTAGGTCAGGCTGCAGAGGAGAG
CAACTGCTGTGCTCGTCTGTGCTGTGGCGCCCGTCGGCCCCTGCGAGTCCGCCTGGTGGA
CCCCGGGGACCGAGAGGTGCTCCGCCTGCTCCGCCCTCTCCATTGTGGCTGCAGCTGCTG
TCCGTGCGGCCTCCAGGAGATGGAAGTACAGTCTCCACCGGGCACCACCATTGGCCATGT
TCTACAGACCTGGCATCCCTTCCTCCCCAAGTTCTCCATTCAGGATGCTGATCGCCAGAC
GGTTTTGCGAGTAGTGGGCCCCTGCTGGACCTGTGGCTGTGGCACAGACACCAACTTTGA
GGTGAAGACCCCGGACGAATCCCGCAGCGTAGGCCGCATCAGCAAGCAGTGGGGCGGGCT
GCTCCGAGAGGCCCTCACCGACGCCGATGACTTCGGCCTGCAGTTCCCGCTGGACCTGGA
CGTGAGGGTGAAGGCTGTGCTGCTGGGCGCCACATTCCTCATCGACTACATGTTCTTCGA
GAAGCGAGGAGGCGCCGGGCCCTCAGCCGTCACCAGTTAGAGGCCGCCTCAGGGTGAAGA
GACCATCAGACTCAACCAGAATCCACGATGGTCCCTGGCCCTGACCTGGCCCCTCCTCAG
AGACAGTCCCTTTCCTCCGTGTACACTGCAGGGGAGAGACAGGGACCCCTGAGAGGCTGG
GGGCTTGGCGCCCCGGCCCAGCCCACTCCCCTGGCCTCCTTCACCTCTGGCCCCTCCGGA
AGCGTAGATATGAGAGCCCTTCCCCGTGCCTCCCACCAGCACCCCTGCACTCCCGGCACA
CAGGCGTATCGCTTTCAGACTTTCCCTCCCCGCTTCCTCCCACCCCCTTCCAGAGCCTCT
GCTCCAGACCAGGCCTTGCGCCCTGGGAAGGCAGGGCTCTGGGGTTTCGTGACAGGTGGG
GACTTCAACGTAGCACCAAAGATGACAGGCGTGGCCAGCCTTTCCCCGCATCGGGACTGG
CTCCTAACTGAGGTGGCCGCTCCCTCCCAGCCCGGCGGGAGGGCCCAGGCCCCAGCGCCA
ACTTCCTCCCCTGGCTGGTGCTTGCCACGGCCCCCTGTGCCTTACCTCACCACCCCTTCT
TCCCTCGCCCCAGGAAGGAGGCTGCCTCTTTGTATGTTATGTTCATATAAACTTTGTAAC
TTTTTGTGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCTGGAGACCCTGGGCCGGCGGTGGGCGCAGCTGCCTCTCCGCGTTTGCCTGTCCG
TCTTTGTGTCTGTCTCTGTGTCTGTCTGGCTGTCTCCGAGCTTGCCTCCACTTCTAGAAC
TAAGCCTCCGGGACACCGACATCCCGCGAACCCTCCCCCGTCTCCCATGGCAGGCTACAT
ACCCCCCAAGGGCTACGCCCCTTCGCCCCCACCTCCCTATCCTGTGACCGCTGGGTACCC
GGAGCCGGCGCTGCATCCTGGGCCCGGGCCCAGCCAGGCGCCAGTGCCTGCCCACGTGCC
TGCCCCAGCGCCCGGCTTTGCTCTCTTCCCCTCGCCCGGCCCTGCGGCCCCGGGGCCAGC
TGCCCCCTTCTTGCCAGTGCCCGGGGTGCCTTTCGGCCTCGAATTCCTGGTGCAGATTGA
TCAGATCTTGATTCACCAGAAAGCTGAGCGGGTGGAAACGCTCCTGGGCTGGGAGACCTG
TAACCGGTACGAACTGCGCTCGGGGGCCGGACAGCCCCTAGGTCAGGCTGCAGAGGAGAG
CAACTGCTGTGCTCGTCTGTGCTGTGGCGCCCGTCGGCCCCTGCGAGTCCGCCTGGTGGA
CCCCGGGGACCGAGAGGTGCTCCGCCTGCTCCGCCCTCTCCATTGTGGCTGCAGCTGCTG
TCCGTGCGGCCTCCAGGAGATGGAAGTACAGTCTCCACCGGGCACCACCATTGGCCATGT
TCTACAGACCTGGCATCCCTTCCTCCCCAAGTTCTCCATTCAGGATGCTGATCGCCAGAC
GGTTTTGCGAGTAGTGGGCCCCTGCTGGACCTGTGGCTGTGGCACAGACACCAACTTTGA
GGTGAAGACCCCGGACGAATCCCGCAGCGTAGGCCGCATCAGCAAGCAGTGGGGCGGGCT
GCTCCGAGAGGCCCTCACCGACGCCGATGACTTCGGCCTGCAGTTCCCGCTGGACCTGGA
CGTGAGGGTGAAGGCTGTGCTGCTGGGCGCCACATTCCTCATCGACTACATGTTCTTCGA
GAAGCGAGGAGGCGCCGGGCCCTCAGCCGTCACCAGTTAGAGGCCGCCTCAGGGTGAAGA
GACCATCAGACTCAACCAGAATCCACGATGGTCCCTGGCCCTGACCTGGCCCCTCCTCAG
AGACAGTCCCTTTCCTCCGTGTACACTGCAGGGGAGAGACAGGGACCCCTGAGAGGCTGG
GGGCTTGGCGCCCCGGCCCAGCCCACTCCCCTGGCCTCCTTCACCTCTGGCCCCTCCGGA
AGCGTAGATATGAGAGCCCTTCCCCGTGCCTCCCACCAGCACCCCTGCACTCCCGGCACA
CAGGCGTATCGCTTTCAGACTTTCCCTCCCCGCTTCCTCCCACCCCCTTCCAGAGCCTCT
GCTCCAGACCAGGCCTTGCGCCCTGGGAAGGCAGGGCTCTGGGGTTTCGTGACAGGTGGG
GACTTCAACGTAGCACCAAAGATGACAGGCGTGGCCAGCCTTTCCCCGCATCGGGACTGG
CTCCTAACTGAGGTGGCCGCTCCCTCCCAGCCCGGCGGGAGGGCCCAGGCCCCAGCGCCA
ACTTCCTCCCCTGGCTGGTGCTTGCCACGGCCCCCTGTGCCTTACCTCACCACCCCTTCT
TCCCTCGCCCCAGGAAGGAGGCTGCCTCTTTGTATGTTATGTTCATATAAACTTTGTAAC
TTTTTGTGCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q567U0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q567U0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1036-1153, - strand, RNAz p=0.75793
               

               
               1348-1460, + strand, RNAz p=0.621709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1036-1153, - strand, RNAz p=0.75793
               

               
               1348-1460, + strand, RNAz p=0.621709

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020360, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020360, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               171-415, gnl|bosTau2|chr19 (20851609-20851871)
               

               
               171-415, gnl|canFam2|chr5 (35326875-35327101)
               

               
               171-415, gnl|dasNov1|scaffold_21063 (6999-6756)
               

               
               171-415, gnl|hg17|chr17 (7237611-7237830)
               

               
               171-415, gnl|Hg17|chr17 (7237882-7237644)
               

               
               171-415, gnl|mm7|chr11 (69929174-69928960)
               

               
               171-415, gnl|Mm7|chr11 (69928906-69929147)
               

               
               171-415, gnl|monDom2|scaffold_66 (4360715-4360911)
               

               
               171-415, gnl|oryCun1|scaffold_83429 (2452-2666)
               

               
               171-415, gnl|panTro1|chr19_random (44511673-44511454)
               

               
               171-415, gnl|rheMac2|chr16 (7120805-7121024)
               

               
               171-415, gnl|rn3|chr10 (56701676-56701462)
               


               
               453-682, gnl|bosTau2|chr19 (20852124-20852353)
               

               
               453-682, gnl|Hg17|chr17 (7237412-7237184)
               

               
               453-682, gnl|Mm7|chr11 (69929371-69929600)
               


               
               997-1686, gnl|bosTau2|chr19 (20854758-20855446)
               

               
               997-1686, gnl|Hg17|chr17 (7234490-7233780)
               

               
               997-1686, gnl|Mm7|chr11 (69931912-69932611)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-415, gnl|bosTau2|chr19 (20851609-20851871)
               

               
               171-415, gnl|canFam2|chr5 (35326875-35327101)
               

               
               171-415, gnl|dasNov1|scaffold_21063 (6999-6756)
               

               
               171-415, gnl|hg17|chr17 (7237611-7237830)
               

               
               171-415, gnl|Hg17|chr17 (7237882-7237644)
               

               
               171-415, gnl|mm7|chr11 (69929174-69928960)
               

               
               171-415, gnl|Mm7|chr11 (69928906-69929147)
               

               
               171-415, gnl|monDom2|scaffold_66 (4360715-4360911)
               

               
               171-415, gnl|oryCun1|scaffold_83429 (2452-2666)
               

               
               171-415, gnl|panTro1|chr19_random (44511673-44511454)
               

               
               171-415, gnl|rheMac2|chr16 (7120805-7121024)
               

               
               171-415, gnl|rn3|chr10 (56701676-56701462)
               


               
               453-682, gnl|bosTau2|chr19 (20852124-20852353)
               

               
               453-682, gnl|Hg17|chr17 (7237412-7237184)
               

               
               453-682, gnl|Mm7|chr11 (69929371-69929600)
               


               
               997-1686, gnl|bosTau2|chr19 (20854758-20855446)
               

               
               997-1686, gnl|Hg17|chr17 (7234490-7233780)
               

               
               997-1686, gnl|Mm7|chr11 (69931912-69932611)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cga (0.279096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1036-1153, - strand, RNAz p=0.75793
	1348-1460, + strand, RNAz p=0.621709

	171-415, gnl\|bosTau2\|chr19 (20851609-20851871)
	171-415, gnl\|canFam2\|chr5 (35326875-35327101)
	171-415, gnl\|dasNov1\|scaffold_21063 (6999-6756)
	171-415, gnl\|hg17\|chr17 (7237611-7237830)
	171-415, gnl\|Hg17\|chr17 (7237882-7237644)
	171-415, gnl\|mm7\|chr11 (69929174-69928960)
	171-415, gnl\|Mm7\|chr11 (69928906-69929147)
	171-415, gnl\|monDom2\|scaffold_66 (4360715-4360911)
	171-415, gnl\|oryCun1\|scaffold_83429 (2452-2666)
	171-415, gnl\|panTro1\|chr19_random (44511673-44511454)
	171-415, gnl\|rheMac2\|chr16 (7120805-7121024)
	171-415, gnl\|rn3\|chr10 (56701676-56701462)

	453-682, gnl\|bosTau2\|chr19 (20852124-20852353)
	453-682, gnl\|Hg17\|chr17 (7237412-7237184)
	453-682, gnl\|Mm7\|chr11 (69929371-69929600)

	997-1686, gnl\|bosTau2\|chr19 (20854758-20855446)
	997-1686, gnl\|Hg17\|chr17 (7234490-7233780)
	997-1686, gnl\|Mm7\|chr11 (69931912-69932611)

	cga (0.279096)
	nms (0.213858)
	nep (0.183925)
	fty (0.17584)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	ese (0.126502)
	cly (0.120642)
	med (0.116252)
	jca (0.11396)
	eje (0.0988338)