Non-Coding RNA Search

Ss1.1-Pig4-TMW8059E08.3

Sequence:


               
               ATGGGAACAAGACAAAAGAGAAGACATAGATGATATGTACCTCTAGTTAGAGAATGTGTG
GATTACACCTGCAGTGTGGATTGTTCCTCTCAGCAGCAAGTATTATTTGAATAAAAATAG
GGGGTGCCGAAGATACAATGTTGCTTTTGAAGGGTGGACAGGTAACTGTTTTTCCCCATC
CTTCTTCCTTGTGAGAGGGGACAGTGCACCATGGAAGCATGTTTCTGATTGTCCGCTGAC
TAGAGTTCTTTCTTGGTGTGTGCAAACTAATGCAGTTTGTAAAAATAAAGGTTCAGGACT
AACCCACAGCCTTTAATCCACCCAGAGGTAAGGTCTTCAGATCCTGTATCCTTGAAGCAG
TGCTGCCACTTGGGCAACTTCTCCAGGGCCCTAACAGCCTCCCTTGGAAGGACTCGTTCT
GTTCCCAGAACCCGAACCCGCTCCCCTTCACTGGGAAGAAACACGTTAACAAAAGCACAT
CCCTCCCGATGTCACTCGTACATCTGCAGAGTTAACAGTGGTTAGGAGTCCAAGGTCTGG
CCCAAAGAAGACTTGCGACTAGTGTGAAGGGAAGGTTCCTTCCTAAACAGTGAAACACAC
AGGTAGAGGCGTTCTTGGAAGTTGCCACGTCAGCTCAGCTCTCAAGTCTGAGCCTAAGAA
GGCGTCACTCCCCTCCCCCAGTTTAATACTGTACAGTCCAGACCCCTAGGGCTCATAAAC
ACCAGAGCAATTTTGTGCTTTGAGCCACTTTTTGACAAAAACGGCTCCATTTTTCCACTC
TGTGGTTTTCTTAAAATAGTTGAGTGTTTTCTAGTCTCCGAGTGGTAAAGTAGTGTTGCT
TTCTAAGCTATCACAGTTGACTTTATTCTTCTACTCTGAAAAAATCTTGACTTGTTTGAG
TGTATATAATATATATAAAGGGAGCCTTAATGGATTTGTTTTCATAATTTAATATTTTTT
GTATTTGCTCTTGTATAATTGTTTTTAACGGAAAGTATTACAGAATTGAGGGTGGAATTC
TTAGAACCAAAGTTATTCTTAATAAAAATCACCACATGCTTGGACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGAACAAGACAAAAGAGAAGACATAGATGATATGTACCTCTAGTTAGAGAATGTGTG
GATTACACCTGCAGTGTGGATTGTTCCTCTCAGCAGCAAGTATTATTTGAATAAAAATAG
GGGGTGCCGAAGATACAATGTTGCTTTTGAAGGGTGGACAGGTAACTGTTTTTCCCCATC
CTTCTTCCTTGTGAGAGGGGACAGTGCACCATGGAAGCATGTTTCTGATTGTCCGCTGAC
TAGAGTTCTTTCTTGGTGTGTGCAAACTAATGCAGTTTGTAAAAATAAAGGTTCAGGACT
AACCCACAGCCTTTAATCCACCCAGAGGTAAGGTCTTCAGATCCTGTATCCTTGAAGCAG
TGCTGCCACTTGGGCAACTTCTCCAGGGCCCTAACAGCCTCCCTTGGAAGGACTCGTTCT
GTTCCCAGAACCCGAACCCGCTCCCCTTCACTGGGAAGAAACACGTTAACAAAAGCACAT
CCCTCCCGATGTCACTCGTACATCTGCAGAGTTAACAGTGGTTAGGAGTCCAAGGTCTGG
CCCAAAGAAGACTTGCGACTAGTGTGAAGGGAAGGTTCCTTCCTAAACAGTGAAACACAC
AGGTAGAGGCGTTCTTGGAAGTTGCCACGTCAGCTCAGCTCTCAAGTCTGAGCCTAAGAA
GGCGTCACTCCCCTCCCCCAGTTTAATACTGTACAGTCCAGACCCCTAGGGCTCATAAAC
ACCAGAGCAATTTTGTGCTTTGAGCCACTTTTTGACAAAAACGGCTCCATTTTTCCACTC
TGTGGTTTTCTTAAAATAGTTGAGTGTTTTCTAGTCTCCGAGTGGTAAAGTAGTGTTGCT
TTCTAAGCTATCACAGTTGACTTTATTCTTCTACTCTGAAAAAATCTTGACTTGTTTGAG
TGTATATAATATATATAAAGGGAGCCTTAATGGATTTGTTTTCATAATTTAATATTTTTT
GTATTTGCTCTTGTATAATTGTTTTTAACGGAAAGTATTACAGAATTGAGGGTGGAATTC
TTAGAACCAAAGTTATTCTTAATAAAAATCACCACATGCTTGGACCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               678-784, - strand, RNAz p=0.702926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               678-784, - strand, RNAz p=0.702926

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1067, gnl|bosTau2|chr13 (17757388-17758483)
               

               
               1-1067, gnl|Hg17|chr10 (14601649-14600567)
               

               
               1-1067, gnl|Mm7|chr2 (3698380-3699410)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1067, gnl|bosTau2|chr13 (17757388-17758483)
               

               
               1-1067, gnl|Hg17|chr10 (14601649-14600567)
               

               
               1-1067, gnl|Mm7|chr2 (3698380-3699410)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.350693)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

	1-1067, gnl\|bosTau2\|chr13 (17757388-17758483)
	1-1067, gnl\|Hg17\|chr10 (14601649-14600567)
	1-1067, gnl\|Mm7\|chr2 (3698380-3699410)

	fbs (0.350693)
	cty (0.20816)
	ill (0.175593)
	cli (0.152812)
	pty (0.142714)
	eje (0.0988338)