Non-Coding RNA Search

Ss1.1-Pig4-TMW8059E09.3

Sequence:


               
               GCGGCCGCGCTCTTGCTTCCCCCGTCGTCTCCCTGGCTCCAAGGAGAGGAATTGGAACCG
GGCAGCCCCAAAACACCGAGAGAGGGGGGTCAAGAGTTGCTTCATTGGCTCCTGGGGAAA
TCAGATGTCATGACTGCCTTTTGCCGCAGCCTCCCATCCGAGCTTTTAACTTCGGTGGCA
GGGCGTTATCCAGAGCTTTCCCGGGTCTATCTGGGTCTGCTGATAGACTGGGGTCGGCAC
CTGAACTATGACCTTCAGAAAGGCATTTGGTTTGGAACTGAGCCCCGCGATGTGCCGTGG
GAGGAGTTGTTCAGCAGGTTTCAAACCCTCTGTCAGGCCCCTCCACCTCTGAAAGATGAA
GTTCTAACTGCCCTGAAGTCCTGTAAGGCTCAAGATGGAGATTTCGAAGTCCCTGGTCTT
AGCATCTGGACAGACCTGTTGTTGGCTCTTGGGAGCAGTGCATGATACTGCATTTGGGAA
AAGACAAGTTTTAGGTCTCAGCCCCGGCCCGAATTCTCTGTGGGCAACTTTCTGTTATTG
ATTACTTGAATGCAAAATTTTGTTTACAAAATTTAAAAATTCCAGTGTTCTCACCAAATC
TCCTATACTTTCATGTGTCCAAAATATTATTTTAGGTGCTAATTTATAATATGTATAATA
CTAACTTCCAAATATGTAAAGTAACTGGCTTGTAGTGGCCATGGATTTTCTGTATAGAAG
CGGTAATGTTCTAAGTATCCTACCTAAAGCCATAGAATTAACAGTAGTTGCTTTTAAGAA
GGCACATTTCTAATAATGCTGAAAAGATATGTGCTTTTCAAAGAAAAAGTAGCTTTAAAG
TGACAAAACAGGACCTTTTTTATATCATTAATGCCTTTTGTAGTTGTTTGTTTTTAAATC
TCTAGAATTGAAGAGATTGCTTTTATCAATGACATGTGTTGTCAGAGTGATTTGGAAAGC
CACCTGGCCTATTTGGACTTTAAACCCTGCACGTTGGCCTTGTTAACCTAATGTTTTAAA
CAATTAACCAGCCTCAACATGTATTAAAATTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGCTCTTGCTTCCCCCGTCGTCTCCCTGGCTCCAAGGAGAGGAATTGGAACCG
GGCAGCCCCAAAACACCGAGAGAGGGGGGTCAAGAGTTGCTTCATTGGCTCCTGGGGAAA
TCAGATGTCATGACTGCCTTTTGCCGCAGCCTCCCATCCGAGCTTTTAACTTCGGTGGCA
GGGCGTTATCCAGAGCTTTCCCGGGTCTATCTGGGTCTGCTGATAGACTGGGGTCGGCAC
CTGAACTATGACCTTCAGAAAGGCATTTGGTTTGGAACTGAGCCCCGCGATGTGCCGTGG
GAGGAGTTGTTCAGCAGGTTTCAAACCCTCTGTCAGGCCCCTCCACCTCTGAAAGATGAA
GTTCTAACTGCCCTGAAGTCCTGTAAGGCTCAAGATGGAGATTTCGAAGTCCCTGGTCTT
AGCATCTGGACAGACCTGTTGTTGGCTCTTGGGAGCAGTGCATGATACTGCATTTGGGAA
AAGACAAGTTTTAGGTCTCAGCCCCGGCCCGAATTCTCTGTGGGCAACTTTCTGTTATTG
ATTACTTGAATGCAAAATTTTGTTTACAAAATTTAAAAATTCCAGTGTTCTCACCAAATC
TCCTATACTTTCATGTGTCCAAAATATTATTTTAGGTGCTAATTTATAATATGTATAATA
CTAACTTCCAAATATGTAAAGTAACTGGCTTGTAGTGGCCATGGATTTTCTGTATAGAAG
CGGTAATGTTCTAAGTATCCTACCTAAAGCCATAGAATTAACAGTAGTTGCTTTTAAGAA
GGCACATTTCTAATAATGCTGAAAAGATATGTGCTTTTCAAAGAAAAAGTAGCTTTAAAG
TGACAAAACAGGACCTTTTTTATATCATTAATGCCTTTTGTAGTTGTTTGTTTTTAAATC
TCTAGAATTGAAGAGATTGCTTTTATCAATGACATGTGTTGTCAGAGTGATTTGGAAAGC
CACCTGGCCTATTTGGACTTTAAACCCTGCACGTTGGCCTTGTTAACCTAATGTTTTAAA
CAATTAACCAGCCTCAACATGTATTAAAATTGTGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1034, gnl|bosTau2|chr29 (16531948-16532982)
               

               
               1-1034, gnl|Hg17|chr11 (22603317-22602315)
               

               
               1-1034, gnl|Mm7|chr7 (48095097-48094025)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1034, gnl|bosTau2|chr29 (16531948-16532982)
               

               
               1-1034, gnl|Hg17|chr11 (22603317-22602315)
               

               
               1-1034, gnl|Mm7|chr7 (48095097-48094025)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               ret (0.257467)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-1034, gnl\|bosTau2\|chr29 (16531948-16532982)
	1-1034, gnl\|Hg17\|chr11 (22603317-22602315)
	1-1034, gnl\|Mm7\|chr7 (48095097-48094025)

	sin (0.349895)
	ret (0.257467)
	gul (0.177588)
	ill (0.175593)
	cje (0.165235)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	ute (0.132784)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)