Ss1.1-Pig4-TMW8059E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGCGGCCTGGCTGCTGGTCTCGTCCGTCCCCCTCCTCCTCCTGTCCGCCGTCCTGACT CTTTCCCTCCTTCCCTCAGAGGATGTCCTCCTTCCAGCTCAACCTCAACCCGCTCAAGGA GCCGCTCGGCTTCATCAAAGTCCTCGAATTGATTGCTTCTATCTTTGCTTTTGCCACCTG TGGAGGTTTTAAGGGCAAAACAGAATTTCAAGTGTCTTGTCCTTCTAAGGTTCCTGACAA TAAAACAATTACAGCTGCTTTTGGTTATCCATTCAGGTTGAATGAAGCATCATTTCAGGC ACCTCCAGGTGGTAATGTGTGTGAAGTAGATTGGAAAAGTTATGTCCTTATTGGAGATTA CTCTTCTTCTGCGCAATTCTATGTTACTTTTGCAGTCTTTGTCTTCCTATACTGCATTGC TGCTCTTCTGCTCTATGTTGGTTACACGAACCTGTATCGTGATAGTCGAAAACTTCCCAT GGCTGACTTTGTTGTTACTCTTGTCGCCACTTTTTTGTGGTTGGTGAGCACTTCAGCCTG GGCTAAAGCTCTTACAGATATTAAAATAGCCACTGGTCCCAATATTGTCCAGGAACTTAT GCCTTGTAATCAACAAGGAGTGACGTGTCATTTTCTCTCCGTGACTAGTATGGGATCCCT AAATGTATCTGTGATCTTTGGCTTTCTGAATATGATACTTTGGGGAGGAAATGCATGGTT TGTGTACAAGGAGACCAGCTTACACAGTCCATCAAATACTTCTACTTCCCATAGTCAAGG AGGTGTTCCTCCCCCAGCTGGAATATAGTTGAAGGGAGAAGAAGTACACTGTATGAATAG ATGTCTATACTATGACCTGTTGCCAACATCTTGAGAAGCATTTTTTGTTTCTAATAAAAG TAATGGCTTTTTCAATAAATTAGTGGGATTAAAATTGTACTGCTTTTTTACATAAAGCTT GTGCCTTTCCTAGAAATTTAAGATGTAAATGTATTCTCACATGTGAATTTGAAAATTCAG GGGCCTATTATGAGATGATACACATTTTCAAATGAATGGTAATTTCTTCGCTAAGTTGTT TGCCTTCCAAAGTGTTTACACTTTAAGCCTTAACATATATCTTCACTCAGAAAAGAGTTA TATTGTCATATCATAATAGGAATAATATCTCTATTGGAATATACACTACTGTAAGTTTGT ACAGACCATATTCCTAGGACCTCTCTTTGTTTAAGAAAGTCTTGATTACATAAATCATAT TTAGAAAAAAACAGTTCATGGTTTATATCTGAACATTGTTTATATGTTATGAAAAAATTT TAATTACAAAGACCGTGTATGTTTTATTTCTGTTTTTCTAAATGACCTACAGTACTTGAT AGGTATACTAAAATTGTTTTGGGTTTGGGGTTTAGAAACCTCTAACAGGTGTATAGTTAA TTTAGTAATTCTCTCACATGAGGTTTATGCTTCCATTATGCTGGTTATTTAATAGATTTG CTGTATAAGTAGAACATGGTTCAGCTAGCTATTTTGATATGTGCAGGCATTACTCCTAGT GATATCTGTTTGCTGCCCTTTGTTGCTCATGCTCCCTCAGTGCAAGTGGAGACCTAATCT CCCTGCAGGTAGAATAAAATAATCTCCATTTTTTATAGGCCCTATTCATAGGGTTAAAAA AAAATTAAGATTGCCTTTTACTTTTGAAATATTTTAAACATTTACTTTCAATGAAGTTGC TATTTTGAGTTCAGCATTGATATTGATATTGTGAAAATCAGTGCAATTCGGATTTCATGT TTTCTTCATGTTTATTACTCTTATTTTACAAATGAATAATTAAGGAATTATGCATCGTAA ACAAGGAATCTAAGTGAGCTCTATTATGGGTGCACTGTCTTTGCACACACATTTGGGTAT CTTCTGAACACAGGACTCTTTCACCTTTTGCTTCCTAATCTTTTCGTTGTACAGGGCCAG ATTTCCTATTACCACTTGATTGTTTATATGTGAAGCATATCTCACTATTGCCTTATTTTT GTTGCTTTTGTTCATGACAAGAATTGTCTATATGAGAATGTATATCTTTTATGCAACTGG CTTAATAAAGAAGTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGCGGCCTGGCTGCTGGTCTCGTCCGTCCCCCTCCTCCTCCTGTCCGCCGTCCTGACT CTTTCCCTCCTTCCCTCAGAGGATGTCCTCCTTCCAGCTCAACCTCAACCCGCTCAAGGA GCCGCTCGGCTTCATCAAAGTCCTCGAATTGATTGCTTCTATCTTTGCTTTTGCCACCTG TGGAGGTTTTAAGGGCAAAACAGAATTTCAAGTGTCTTGTCCTTCTAAGGTTCCTGACAA TAAAACAATTACAGCTGCTTTTGGTTATCCATTCAGGTTGAATGAAGCATCATTTCAGGC ACCTCCAGGTGGTAATGTGTGTGAAGTAGATTGGAAAAGTTATGTCCTTATTGGAGATTA CTCTTCTTCTGCGCAATTCTATGTTACTTTTGCAGTCTTTGTCTTCCTATACTGCATTGC TGCTCTTCTGCTCTATGTTGGTTACACGAACCTGTATCGTGATAGTCGAAAACTTCCCAT GGCTGACTTTGTTGTTACTCTTGTCGCCACTTTTTTGTGGTTGGTGAGCACTTCAGCCTG GGCTAAAGCTCTTACAGATATTAAAATAGCCACTGGTCCCAATATTGTCCAGGAACTTAT GCCTTGTAATCAACAAGGAGTGACGTGTCATTTTCTCTCCGTGACTAGTATGGGATCCCT AAATGTATCTGTGATCTTTGGCTTTCTGAATATGATACTTTGGGGAGGAAATGCATGGTT TGTGTACAAGGAGACCAGCTTACACAGTCCATCAAATACTTCTACTTCCCATAGTCAAGG AGGTGTTCCTCCCCCAGCTGGAATATAGTTGAAGGGAGAAGAAGTACACTGTATGAATAG ATGTCTATACTATGACCTGTTGCCAACATCTTGAGAAGCATTTTTTGTTTCTAATAAAAG TAATGGCTTTTTCAATAAATTAGTGGGATTAAAATTGTACTGCTTTTTTACATAAAGCTT GTGCCTTTCCTAGAAATTTAAGATGTAAATGTATTCTCACATGTGAATTTGAAAATTCAG GGGCCTATTATGAGATGATACACATTTTCAAATGAATGGTAATTTCTTCGCTAAGTTGTT TGCCTTCCAAAGTGTTTACACTTTAAGCCTTAACATATATCTTCACTCAGAAAAGAGTTA TATTGTCATATCATAATAGGAATAATATCTCTATTGGAATATACACTACTGTAAGTTTGT ACAGACCATATTCCTAGGACCTCTCTTTGTTTAAGAAAGTCTTGATTACATAAATCATAT TTAGAAAAAAACAGTTCATGGTTTATATCTGAACATTGTTTATATGTTATGAAAAAATTT TAATTACAAAGACCGTGTATGTTTTATTTCTGTTTTTCTAAATGACCTACAGTACTTGAT AGGTATACTAAAATTGTTTTGGGTTTGGGGTTTAGAAACCTCTAACAGGTGTATAGTTAA TTTAGTAATTCTCTCACATGAGGTTTATGCTTCCATTATGCTGGTTATTTAATAGATTTG CTGTATAAGTAGAACATGGTTCAGCTAGCTATTTTGATATGTGCAGGCATTACTCCTAGT GATATCTGTTTGCTGCCCTTTGTTGCTCATGCTCCCTCAGTGCAAGTGGAGACCTAATCT CCCTGCAGGTAGAATAAAATAATCTCCATTTTTTATAGGCCCTATTCATAGGGTTAAAAA AAAATTAAGATTGCCTTTTACTTTTGAAATATTTTAAACATTTACTTTCAATGAAGTTGC TATTTTGAGTTCAGCATTGATATTGATATTGTGAAAATCAGTGCAATTCGGATTTCATGT TTTCTTCATGTTTATTACTCTTATTTTACAAATGAATAATTAAGGAATTATGCATCGTAA ACAAGGAATCTAAGTGAGCTCTATTATGGGTGCACTGTCTTTGCACACACATTTGGGTAT CTTCTGAACACAGGACTCTTTCACCTTTTGCTTCCTAATCTTTTCGTTGTACAGGGCCAG ATTTCCTATTACCACTTGATTGTTTATATGTGAAGCATATCTCACTATTGCCTTATTTTT GTTGCTTTTGTTCATGACAAGAATTGTCTATATGAGAATGTATATCTTTTATGCAACTGG CTTAATAAAGAAGTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-147, gnl|bosTau2|chr4 (23640523-23640663) | |
| 1-147, gnl|Hg17|chr7 (105346687-105346541) | |
| 1-147, gnl|Mm7|chr12 (30793777-30793930) | |
| 275-485, gnl|bosTau2|chr4 (23659246-23659456) | |
| 275-485, gnl|canFam2|chr18 (17360961-17360798) | |
| 275-485, gnl|danRer3|chr11 (38448084-38448253) | |
| 275-485, gnl|dasNov1|scaffold_74388 (3972-4141) | |
| 275-485, gnl|echTel1|scaffold_315958 (42408-42652) | |
| 275-485, gnl|galGal2|chr1 (9493646-9493465) | |
| 275-485, gnl|hg17|chr7 (105332049-105332219) | |
| 275-485, gnl|Hg17|chr7 (105332296-105332086) | |
| 275-485, gnl|loxAfr1|scaffold_15867 (28901-28734) | |
| 275-485, gnl|mm7|chr12 (30807357-30807188) | |
| 275-485, gnl|Mm7|chr12 (30807109-30807319) | |
| 275-485, gnl|monDom2|scaffold_30 (32455175-32455356) | |
| 275-485, gnl|oryCun1|scaffold_176919 (91407-91236) | |
| 275-485, gnl|panTro1|chr6 (107230484-107230650) | |
| 275-485, gnl|rheMac2|chr3 (143515157-143515327) | |
| 275-485, gnl|rn3|chr6 (51302786-51302617) | |
| 275-485, gnl|tetNig1|chrUn_random (5077064-5076902) | |
| 275-485, gnl|xenTro1|scaffold_61 (2810948-2811111) | |
| 1975-2136, gnl|bosTau2|chr11 (42127769-42127609) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-147, gnl|bosTau2|chr4 (23640523-23640663) | |
| 1-147, gnl|Hg17|chr7 (105346687-105346541) | |
| 1-147, gnl|Mm7|chr12 (30793777-30793930) | |
| 275-485, gnl|bosTau2|chr4 (23659246-23659456) | |
| 275-485, gnl|canFam2|chr18 (17360961-17360798) | |
| 275-485, gnl|danRer3|chr11 (38448084-38448253) | |
| 275-485, gnl|dasNov1|scaffold_74388 (3972-4141) | |
| 275-485, gnl|echTel1|scaffold_315958 (42408-42652) | |
| 275-485, gnl|galGal2|chr1 (9493646-9493465) | |
| 275-485, gnl|hg17|chr7 (105332049-105332219) | |
| 275-485, gnl|Hg17|chr7 (105332296-105332086) | |
| 275-485, gnl|loxAfr1|scaffold_15867 (28901-28734) | |
| 275-485, gnl|mm7|chr12 (30807357-30807188) | |
| 275-485, gnl|Mm7|chr12 (30807109-30807319) | |
| 275-485, gnl|monDom2|scaffold_30 (32455175-32455356) | |
| 275-485, gnl|oryCun1|scaffold_176919 (91407-91236) | |
| 275-485, gnl|panTro1|chr6 (107230484-107230650) | |
| 275-485, gnl|rheMac2|chr3 (143515157-143515327) | |
| 275-485, gnl|rn3|chr6 (51302786-51302617) | |
| 275-485, gnl|tetNig1|chrUn_random (5077064-5076902) | |
| 275-485, gnl|xenTro1|scaffold_61 (2810948-2811111) | |
| 1975-2136, gnl|bosTau2|chr11 (42127769-42127609) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| rec (1.55763) | |
| sag (1.09629) | |
| tbr (0.925069) | |
| isp (0.601504) | |
| cty (0.5204) | |
| pro (0.512033) | |
| amn (0.417711) | |
| ldo (0.38801) | |
| ret (0.3862) | |
| ton (0.351) | |
| fbs (0.350693) | |
| mga (0.32041) | |
| sme (0.305437) | |
| eje (0.296501) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cag (0.151194) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (1.55763) | |
| sag (1.09629) | |
| tbr (0.925069) | |
| isp (0.601504) | |
| cty (0.5204) | |
| pro (0.512033) | |
| amn (0.417711) | |
| ldo (0.38801) | |
| ret (0.3862) | |
| ton (0.351) | |
| fbs (0.350693) | |
| mga (0.32041) | |
| sme (0.305437) | |
| eje (0.296501) | |
| ute (0.265569) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cag (0.151194) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) |