Ss1.1-Pig4-TMW8059E17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCCTGGCTCTGAAGGAGTGCATCCGGGCCCTGGGACAGAACAAGGCTCACACTCCTT TCCGCGAGAGCAAGCTGACGCAGGTGCTGAGGGACTCCTTCATCGGGGAGAACTCGAGGA CCTGCATGATTGCCATGATCTCGCCAGGCATAAGCTCCTGTGAATATACCTTAAATACAC TAAGATACGCGGACAGGGTCAAGGAGCTGAGCCCGCACAGTGGGCCCAGTGGGGAGCAGC CCGTTCAGATGGACACCGAAGACATGGAAGCCAGCTCCAACGGGGCCCTGAGCACAGGCG ACTTCTCCAAGGAAGAGGAGGAGCTCTCTTCCCAGATCTCCAGCTTCAATGAAGCCATGA CTCAGATCAGGGAGCTGGAGGAGAGGGCCGTGGAAGAGCTCAAGGAGATTATACAGCAAG GGCCAGGCTGGCTGGAGCTCTCCGAGATGACTGAGCAGCCAGACTACGACCTGGAGACCT TTGTGAACAAAGCAGAGTGTGCCCTGGCCCAGCAAGCCAAGCACTTCTCAGCCCTGCGAG ATGTCATCAAGGCCTTGCGCCTGGCCATGCAGCTGGAAGAGCAGGCCAGCAAACAAATAA GCAGCAAGAAACGGCCCCAGTGACGACTGCAAATAAAGATCTGTTTGGTGTCACACCCAG CTTTTTCCCTCCCCTTCCCTCCCCAGTGAACTCTGGGCACCTGGTGGGTCAAGTAAGGGT CTGAGCTGGGACAGGCCTTGGTAAATGCCAAGTGTTGGGGCAGCTGGGGAGGGGTCAGGG TGCATTGGACACCACCTCCCTTTTCCTCCGTGTAGCCCTGAAGAGAACAAGGATGGAAGG AGGAGCTTTTAGTTGCCCACGTGCCCTCCTTCTCTCCAAGAGGGGAAGGCTCTGCGGCAT AGTGTCCCCACGGCAGCAGAGGACTGGCCCATAAGGACTGGCTGCTGGGGGAGTTCTCGC TGGGTTGTCCAGGCTCTGGGGAGAGGGAAGGAGCCTTTAGTTCAGCTCTGCTGACCCTGG CCTGCCTTCCACACCCTTGGTCTGGGCACTAAATGTCTTATACTTTAAAAGAAGTTTCTG GGACCTCTTCCTTATTTGTGTTTTTTTTTGAGGCCCCAAAGGATCCCTGCTATTTTCTGT TTTATGTGTTTATACATTGCGTCTAACAATAAAGAGAAAAGAATCAGCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCCTGGCTCTGAAGGAGTGCATCCGGGCCCTGGGACAGAACAAGGCTCACACTCCTT TCCGCGAGAGCAAGCTGACGCAGGTGCTGAGGGACTCCTTCATCGGGGAGAACTCGAGGA CCTGCATGATTGCCATGATCTCGCCAGGCATAAGCTCCTGTGAATATACCTTAAATACAC TAAGATACGCGGACAGGGTCAAGGAGCTGAGCCCGCACAGTGGGCCCAGTGGGGAGCAGC CCGTTCAGATGGACACCGAAGACATGGAAGCCAGCTCCAACGGGGCCCTGAGCACAGGCG ACTTCTCCAAGGAAGAGGAGGAGCTCTCTTCCCAGATCTCCAGCTTCAATGAAGCCATGA CTCAGATCAGGGAGCTGGAGGAGAGGGCCGTGGAAGAGCTCAAGGAGATTATACAGCAAG GGCCAGGCTGGCTGGAGCTCTCCGAGATGACTGAGCAGCCAGACTACGACCTGGAGACCT TTGTGAACAAAGCAGAGTGTGCCCTGGCCCAGCAAGCCAAGCACTTCTCAGCCCTGCGAG ATGTCATCAAGGCCTTGCGCCTGGCCATGCAGCTGGAAGAGCAGGCCAGCAAACAAATAA GCAGCAAGAAACGGCCCCAGTGACGACTGCAAATAAAGATCTGTTTGGTGTCACACCCAG CTTTTTCCCTCCCCTTCCCTCCCCAGTGAACTCTGGGCACCTGGTGGGTCAAGTAAGGGT CTGAGCTGGGACAGGCCTTGGTAAATGCCAAGTGTTGGGGCAGCTGGGGAGGGGTCAGGG TGCATTGGACACCACCTCCCTTTTCCTCCGTGTAGCCCTGAAGAGAACAAGGATGGAAGG AGGAGCTTTTAGTTGCCCACGTGCCCTCCTTCTCTCCAAGAGGGGAAGGCTCTGCGGCAT AGTGTCCCCACGGCAGCAGAGGACTGGCCCATAAGGACTGGCTGCTGGGGGAGTTCTCGC TGGGTTGTCCAGGCTCTGGGGAGAGGGAAGGAGCCTTTAGTTCAGCTCTGCTGACCCTGG CCTGCCTTCCACACCCTTGGTCTGGGCACTAAATGTCTTATACTTTAAAAGAAGTTTCTG GGACCTCTTCCTTATTTGTGTTTTTTTTTGAGGCCCCAAAGGATCCCTGCTATTTTCTGT TTTATGTGTTTATACATTGCGTCTAACAATAAAGAGAAAAGAATCAGCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 194-299, + strand, RNAz p=0.641687 | |
| 303-416, + strand, RNAz p=0.726385 | |
| 652-987, - strand, RNAz p=0.959532 | |
| 873-1176, - strand, RNAz p=0.938844 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 194-299, + strand, RNAz p=0.641687 | |
| 303-416, + strand, RNAz p=0.726385 | |
| 652-987, - strand, RNAz p=0.959532 | |
| 873-1176, - strand, RNAz p=0.938844 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 16-128, gnl|bosTau2|chr3 (68117958-68118070) | |
| 16-128, gnl|canFam2|chr15 (18567319-18567183) | |
| 16-128, gnl|danRer3|chr2 (24607145-24607018) | |
| 16-128, gnl|dasNov1|scaffold_12922 (6849-6717) | |
| 16-128, gnl|echTel1|scaffold_92421 (1008-1114) | |
| 16-128, gnl|fr1|chrUn (35889362-35889235) | |
| 16-128, gnl|galGal2|chr8 (21022966-21022831) | |
| 16-128, gnl|hg17|chr1 (44895346-44895479) | |
| 16-128, gnl|Hg17|chr1 (44895355-44895467) | |
| 16-128, gnl|loxAfr1|scaffold_76551 (4498-4630) | |
| 16-128, gnl|mm7|chr4 (116541706-116541572) | |
| 16-128, gnl|Mm7|chr4 (116541693-116541581) | |
| 16-128, gnl|monDom2|scaffold_70 (8014238-8014108) | |
| 16-128, gnl|oryCun1|scaffold_203905 (43134-42999) | |
| 16-128, gnl|panTro1|chr1_random (65778989-65778855) | |
| 16-128, gnl|rheMac2|chr1 (47688624-47688757) | |
| 16-128, gnl|rn3|chr5 (137486288-137486153) | |
| 16-128, gnl|tetNig1|chr12 (2900500-2900624) | |
| 16-128, gnl|xenTro1|scaffold_457 (492998-492867) | |
| 194-299, gnl|bosTau2|chr3 (68119698-68119803) | |
| 194-299, gnl|Hg17|chr1 (44897108-44897213) | |
| 194-299, gnl|Mm7|chr4 (116538760-116538655) | |
| 303-416, gnl|bosTau2|chr3 (68119898-68120011) | |
| 303-416, gnl|canFam2|chr15 (18565441-18565308) | |
| 303-416, gnl|danRer3|chr8 (4694773-4694878) | |
| 303-416, gnl|dasNov1|scaffold_12922 (5195-5062) | |
| 303-416, gnl|echTel1|scaffold_92421 (1296-1409) | |
| 303-416, gnl|fr1|chrUn (35888257-35888148) | |
| 303-416, gnl|galGal2|chr8 (21020655-21020522) | |
| 303-416, gnl|hg17|chr1 (44897304-44897437) | |
| 303-416, gnl|Hg17|chr1 (44897310-44897423) | |
| 303-416, gnl|loxAfr1|scaffold_76551 (6588-6721) | |
| 303-416, gnl|mm7|chr4 (116538568-116538438) | |
| 303-416, gnl|Mm7|chr4 (116538562-116538449) | |
| 303-416, gnl|monDom2|scaffold_70 (8013090-8012957) | |
| 303-416, gnl|oryCun1|scaffold_203905 (41790-41661) | |
| 303-416, gnl|panTro1|chr1_random (65777029-65776896) | |
| 303-416, gnl|rheMac2|chr1 (47690577-47690710) | |
| 303-416, gnl|rn3|chr5 (137482801-137482671) | |
| 303-416, gnl|tetNig1|chr12 (2901977-2902061) | |
| 303-416, gnl|xenTro1|scaffold_1193 (217031-216904) | |
| 533-1188, gnl|bosTau2|chr3 (68121689-68122356) | |
| 533-1188, gnl|Hg17|chr1 (44901854-44902514) | |
| 533-1188, gnl|Mm7|chr4 (116536688-116536068) | |
| 655-1158, gnl|bosTau2|chr15 (1813724-1813205) | |
| 655-1158, gnl|Hg17|chr1 (44901976-44902481) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-128, gnl|bosTau2|chr3 (68117958-68118070) | |
| 16-128, gnl|canFam2|chr15 (18567319-18567183) | |
| 16-128, gnl|danRer3|chr2 (24607145-24607018) | |
| 16-128, gnl|dasNov1|scaffold_12922 (6849-6717) | |
| 16-128, gnl|echTel1|scaffold_92421 (1008-1114) | |
| 16-128, gnl|fr1|chrUn (35889362-35889235) | |
| 16-128, gnl|galGal2|chr8 (21022966-21022831) | |
| 16-128, gnl|hg17|chr1 (44895346-44895479) | |
| 16-128, gnl|Hg17|chr1 (44895355-44895467) | |
| 16-128, gnl|loxAfr1|scaffold_76551 (4498-4630) | |
| 16-128, gnl|mm7|chr4 (116541706-116541572) | |
| 16-128, gnl|Mm7|chr4 (116541693-116541581) | |
| 16-128, gnl|monDom2|scaffold_70 (8014238-8014108) | |
| 16-128, gnl|oryCun1|scaffold_203905 (43134-42999) | |
| 16-128, gnl|panTro1|chr1_random (65778989-65778855) | |
| 16-128, gnl|rheMac2|chr1 (47688624-47688757) | |
| 16-128, gnl|rn3|chr5 (137486288-137486153) | |
| 16-128, gnl|tetNig1|chr12 (2900500-2900624) | |
| 16-128, gnl|xenTro1|scaffold_457 (492998-492867) | |
| 194-299, gnl|bosTau2|chr3 (68119698-68119803) | |
| 194-299, gnl|Hg17|chr1 (44897108-44897213) | |
| 194-299, gnl|Mm7|chr4 (116538760-116538655) | |
| 303-416, gnl|bosTau2|chr3 (68119898-68120011) | |
| 303-416, gnl|canFam2|chr15 (18565441-18565308) | |
| 303-416, gnl|danRer3|chr8 (4694773-4694878) | |
| 303-416, gnl|dasNov1|scaffold_12922 (5195-5062) | |
| 303-416, gnl|echTel1|scaffold_92421 (1296-1409) | |
| 303-416, gnl|fr1|chrUn (35888257-35888148) | |
| 303-416, gnl|galGal2|chr8 (21020655-21020522) | |
| 303-416, gnl|hg17|chr1 (44897304-44897437) | |
| 303-416, gnl|Hg17|chr1 (44897310-44897423) | |
| 303-416, gnl|loxAfr1|scaffold_76551 (6588-6721) | |
| 303-416, gnl|mm7|chr4 (116538568-116538438) | |
| 303-416, gnl|Mm7|chr4 (116538562-116538449) | |
| 303-416, gnl|monDom2|scaffold_70 (8013090-8012957) | |
| 303-416, gnl|oryCun1|scaffold_203905 (41790-41661) | |
| 303-416, gnl|panTro1|chr1_random (65777029-65776896) | |
| 303-416, gnl|rheMac2|chr1 (47690577-47690710) | |
| 303-416, gnl|rn3|chr5 (137482801-137482671) | |
| 303-416, gnl|tetNig1|chr12 (2901977-2902061) | |
| 303-416, gnl|xenTro1|scaffold_1193 (217031-216904) | |
| 533-1188, gnl|bosTau2|chr3 (68121689-68122356) | |
| 533-1188, gnl|Hg17|chr1 (44901854-44902514) | |
| 533-1188, gnl|Mm7|chr4 (116536688-116536068) | |
| 655-1158, gnl|bosTau2|chr15 (1813724-1813205) | |
| 655-1158, gnl|Hg17|chr1 (44901976-44902481) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| ebs (0.118301) | |
| jej (0.0989218) |