Non-Coding RNA Search

Ss1.1-Pig4-TMW8059E23.3

Sequence:


               
               GCAGTTCATGCTGGAGACACTGAGATTTGTCAAGGCGTTTCGGCCTCAGCATCTGTGGGG
CTTCTACCTCTTCCCCGACTGTTATAACCATGATTATGTGCAGAACTGGGAGACCTATAC
CGGCCGCTGCCCTGATGTTGAGGTTTCCCGAAACGACCAGCTGGCCTGGCTGTGGGCTGA
GAGCACGGCGCTCTTCCCCTCTGTCTACCTGGAAGAGACACTCGCTTCTTCCACTCATGG
CCGCAATTTTGTCAGCTTCCGTGTTCAGGAGGCCCTTCGTGTGGCTCACACCCACCATGC
CAACCATGCACTCCCGGTCTACGTCTTCACGAGGCCCACCTATAGCCGCGGCCTCACAGG
GCTTAGCGAGATGGATCTCATCTCCACCATTGGTGAGAGTGCAGCCCTAGGTGCGGCTGG
CGTCATCCTCTGGGGAGACGCAGGGTACACCACCAGCATGGAGACCTGCCAATACCTCAA
GGATTACCTGACACGGCTGCTGGTACCCTACGTCGTCAATGTGTCCTGGGCTGCCCAGTA
TTGCAGCTGGGCCCAGTGCCATGGCCATGGGCGCTGTGTGCGCCGAGACCCCAGTGCTAA
TATCTTCCTGCACCTCAGTGCCAGCAGCTTCCGCCTAGTGGCCAGCCATGCACCTGGGGA
GCCGCAGCTGCGACCAGAAGGGGAACTCAGTTGGGCCGACCGCAACCACCTGCAGACGCA
CTTTCGCTGCCAGTGCTATGTGGGCTGGGGCGGCGAGCAATGCCAGCGGGACCTTAGGCG
GGCAGCTGGGGATGCCAGCAGGGCCTGGGCTGGGTCCCACCTCACCAGCTTGCTGGCTCT
GGCAGCCCTGGCCCTCACCTGGACTTTGTAAGGGTCTCTCACCTGGCTGCCAGGCAAGCT
GGGCTCTGCCAGGCATGTAGGAGCCTGCAAGGGGTGGACAAACTGGAGTCTGGAGGGGCA
GAGCCCCTGGGATACCCAGCAGGGTGTTCGTACCAGCTCCCACCCCCTGTTCTAAGGGGG
AGGGGCAGTCCCCTGGGAGGCCCCTTCTCTCCCTGCCAGAGAGGAAGAGGGGCACAGCCG
GGCTGGGGAGGACCTGACCCTACTCCCCTGTCCCTGTATAGTTTATTATTATTATTTTGG
GGTCTCTTTCATAAATTAAATATAAAACAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTCATGCTGGAGACACTGAGATTTGTCAAGGCGTTTCGGCCTCAGCATCTGTGGGG
CTTCTACCTCTTCCCCGACTGTTATAACCATGATTATGTGCAGAACTGGGAGACCTATAC
CGGCCGCTGCCCTGATGTTGAGGTTTCCCGAAACGACCAGCTGGCCTGGCTGTGGGCTGA
GAGCACGGCGCTCTTCCCCTCTGTCTACCTGGAAGAGACACTCGCTTCTTCCACTCATGG
CCGCAATTTTGTCAGCTTCCGTGTTCAGGAGGCCCTTCGTGTGGCTCACACCCACCATGC
CAACCATGCACTCCCGGTCTACGTCTTCACGAGGCCCACCTATAGCCGCGGCCTCACAGG
GCTTAGCGAGATGGATCTCATCTCCACCATTGGTGAGAGTGCAGCCCTAGGTGCGGCTGG
CGTCATCCTCTGGGGAGACGCAGGGTACACCACCAGCATGGAGACCTGCCAATACCTCAA
GGATTACCTGACACGGCTGCTGGTACCCTACGTCGTCAATGTGTCCTGGGCTGCCCAGTA
TTGCAGCTGGGCCCAGTGCCATGGCCATGGGCGCTGTGTGCGCCGAGACCCCAGTGCTAA
TATCTTCCTGCACCTCAGTGCCAGCAGCTTCCGCCTAGTGGCCAGCCATGCACCTGGGGA
GCCGCAGCTGCGACCAGAAGGGGAACTCAGTTGGGCCGACCGCAACCACCTGCAGACGCA
CTTTCGCTGCCAGTGCTATGTGGGCTGGGGCGGCGAGCAATGCCAGCGGGACCTTAGGCG
GGCAGCTGGGGATGCCAGCAGGGCCTGGGCTGGGTCCCACCTCACCAGCTTGCTGGCTCT
GGCAGCCCTGGCCCTCACCTGGACTTTGTAAGGGTCTCTCACCTGGCTGCCAGGCAAGCT
GGGCTCTGCCAGGCATGTAGGAGCCTGCAAGGGGTGGACAAACTGGAGTCTGGAGGGGCA
GAGCCCCTGGGATACCCAGCAGGGTGTTCGTACCAGCTCCCACCCCCTGTTCTAAGGGGG
AGGGGCAGTCCCCTGGGAGGCCCCTTCTCTCCCTGCCAGAGAGGAAGAGGGGCACAGCCG
GGCTGGGGAGGACCTGACCCTACTCCCCTGTCCCTGTATAGTTTATTATTATTATTTTGG
GGTCTCTTTCATAAATTAAATATAAAACAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47523932|ref|NP_999605.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47523932|ref|NP_999605.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               739-1155, + strand, RNAz p=0.999827

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               739-1155, + strand, RNAz p=0.999827

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_033158, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033158, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-370, gnl|bosTau2|chr22 (38573862-38573493)
               

               
               1-370, gnl|Hg17|chr3 (50332373-50332004)
               

               
               1-370, gnl|Mm7|chr9 (107300149-107300518)
               


               
               460-1173, gnl|bosTau2|chr22 (38572284-38571556)
               

               
               460-1173, gnl|Hg17|chr3 (50330975-50330245)
               

               
               460-1173, gnl|Mm7|chr9 (107301505-107302226)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr22 (38573862-38573493)
               

               
               1-370, gnl|Hg17|chr3 (50332373-50332004)
               

               
               1-370, gnl|Mm7|chr9 (107300149-107300518)
               


               
               460-1173, gnl|bosTau2|chr22 (38572284-38571556)
               

               
               460-1173, gnl|Hg17|chr3 (50330975-50330245)
               

               
               460-1173, gnl|Mm7|chr9 (107301505-107302226)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-370, gnl\|bosTau2\|chr22 (38573862-38573493)
	1-370, gnl\|Hg17\|chr3 (50332373-50332004)
	1-370, gnl\|Mm7\|chr9 (107300149-107300518)

	460-1173, gnl\|bosTau2\|chr22 (38572284-38571556)
	460-1173, gnl\|Hg17\|chr3 (50330975-50330245)
	460-1173, gnl\|Mm7\|chr9 (107301505-107302226)

	ece (0.229305)
	ill (0.175593)
	duo (0.172801)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)
	cty (0.10408)