Non-Coding RNA Search

Ss1.1-Pig4-TMW8059F19.5

Sequence:


               
               AGCTGAAGAAACACTTAAATTCTGGAAATAGCGACTCTATCATGGCCGGCAGCCCTAATG
AAGATTCAGAAGGAAGCAGAATTACTTATGTGAAAGGAGACCTTTTCGCATGCCCCAAGA
CAGACTCTTTAGCGCACTGCATCAGTGAGGATTGTCGAATGGGCGCTGGGATAGCTGTCC
TCTTCAAGAAGAAATTTGGAGGGGTGCAGGAACTGTTAAGTCAACAAAAGAAATCTGGAG
AAGTGGCTGTTCTGAAGAGAGATGGGCGATATATATATTACTTGATTACAAAGAAGAGGG
CTTCACACAAGCCAACTTATGAGAACTTGCAGAAGAGTTTAGAGGCCATGAAGTCCCATT
GTCTGAAGAATGGAGTCACTGACCTCTCCATGCCCAGGATTGGGTGTGGTCTTGACCGTC
TGCAATGGGAACATGTATCTGCGATGATTGAGGAGGTGTTTGATGCAACGGATATCAGAA
TCACTGTGTACACACTCTGAACAGATGACCATTTTGGATGTGCCCACCTCCTGTGTCATC
TGTAACGGGCCATAGGACTGAGCAAACTGACTTTAAAATGGTCAGAGGAAAGTTTCATGT
GAAGTCGTCTGTGACAAAAGCCAGACTTCGGTTGTTGTATTCTCATGATTGGACTGGGAC
TCTGGAGGAGGGTCTGCTTGGGAAATATTACTTGTTATTATTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGAAGAAACACTTAAATTCTGGAAATAGCGACTCTATCATGGCCGGCAGCCCTAATG
AAGATTCAGAAGGAAGCAGAATTACTTATGTGAAAGGAGACCTTTTCGCATGCCCCAAGA
CAGACTCTTTAGCGCACTGCATCAGTGAGGATTGTCGAATGGGCGCTGGGATAGCTGTCC
TCTTCAAGAAGAAATTTGGAGGGGTGCAGGAACTGTTAAGTCAACAAAAGAAATCTGGAG
AAGTGGCTGTTCTGAAGAGAGATGGGCGATATATATATTACTTGATTACAAAGAAGAGGG
CTTCACACAAGCCAACTTATGAGAACTTGCAGAAGAGTTTAGAGGCCATGAAGTCCCATT
GTCTGAAGAATGGAGTCACTGACCTCTCCATGCCCAGGATTGGGTGTGGTCTTGACCGTC
TGCAATGGGAACATGTATCTGCGATGATTGAGGAGGTGTTTGATGCAACGGATATCAGAA
TCACTGTGTACACACTCTGAACAGATGACCATTTTGGATGTGCCCACCTCCTGTGTCATC
TGTAACGGGCCATAGGACTGAGCAAACTGACTTTAAAATGGTCAGAGGAAAGTTTCATGT
GAAGTCGTCTGTGACAAAAGCCAGACTTCGGTTGTTGTATTCTCATGATTGGACTGGGAC
TCTGGAGGAGGGTCTGCTTGGGAAATATTACTTGTTATTATTAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21450830|ref|NP_659500.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21450830|ref|NP_659500.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               395-680, gnl|bosTau2|chr23 (14339016-14339295)
               

               
               395-680, gnl|Hg17|chr6 (41143157-41142867)
               

               
               395-680, gnl|Mm7|chr17 (46562294-46562587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               395-680, gnl|bosTau2|chr23 (14339016-14339295)
               

               
               395-680, gnl|Hg17|chr6 (41143157-41142867)
               

               
               395-680, gnl|Mm7|chr17 (46562294-46562587)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               ece (0.229305)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               ece (0.229305)

	395-680, gnl\|bosTau2\|chr23 (14339016-14339295)
	395-680, gnl\|Hg17\|chr6 (41143157-41142867)
	395-680, gnl\|Mm7\|chr17 (46562294-46562587)