Ss1.1-Pig4-TMW8059F22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGTCAGTGGGTGAGCCGGGAGCCGAGGAGGTCACCGTGGGGAGGCGGGGCGGGGGCA GCATGGCAGCCTCCTTACGGCTCCGTGGAGCCGCCTCTGGCCTCCTGTACTGGAGCCGCC GGCAGCGGCCGGCAGCGGCCAGCCTTGTAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGA CTCCAGTTGGATTCATTGGTGTAGGCAACATGGGGAATCCAATGGCAAAAAATCTCATGA AACATGGCTATCCACTCATTATTTATGATGTGTTCCCTGATGCATGCAAAGAGTTTCTAG ATGCGGGTGAACAGGTAGTGTCTTCCCCAGCAGATGTGGCTGAAAAAGCTGACAGAATTA TTACAATGTTACCCACCAGTATCAATGCAATAGAAGCTTATTCTGGAGCAAATGGAATTC TAAAAAAAGTGAAGAAAGGCTCATTGTTAATAGATTCCAGTACTATTGATCCTATGATTT CAAAAGAGTTGGCCAAAGAAGTTGAGAAAATGGGAGCAGTTTTCATGGATGCCCCTGTTT CTGGCGGTGTGGGAGCTGCTCGGTCTGGGAACCTCACGTTTATGGTGGGAGGAGTTGAAG AGGAATTTGCTGCTGCCCAAGAGCTGCTGGGATGCATGGGCTCCAATGTGGTGTATTGTG GAGCTGTTGGGACCGGGCAGGCTGCAAAGATATGCAACAACTTGCTGTTAGCTATAAGTA TGATTGGAACTGCTGAAGCTATGAATCTGGGAATCAGGTTAGGGCTTGACCCAAAACTCT TGGCTAAAATCCTGAATATGAGTTCAGGGCGGTGTTGGTCAAGTGACACTTACAATCCTG TACCTGGGGTGATGGATGGAGTTCCCTCGGCTAATAACTATCAGGGCGGATTCGGAACAA CGCTCATGGCTAAGGATCTGGGCCTAGCGCAAGACTCTGCCACCAGCACGAAGAGCCCAA TCCTTCTGGGCAGTCAAGCCCATCAGATCTACAGGCTGATGTGTGCGAAGGGCTACGCAA ACAAAGACTTCTCATCTGTGTTCCAGTTTCTACGAGAGGAGGAGACGTTCTGAGTTTGCC CTTCGGCTGTGGACACTGGGAAACCAAACTCTATCTTGGAGCCGCTTATAGCTCACTCCA CAAGTAAATGGGTTTAATCAAAGGTCACCTGTCTCCTTTTGATTGTCTAGGTCACAGTAA ACCCTGGGATTTTTCACCCATTTTTAACTGCTGCTGCTTTTTACCTATGTAGCAAACACA TATTCTCTGAAATTTTGTTCTTCTGCAAGCCACTGATGGTCTCTGCTAACTAACTTTTGC AGACGTTTGATTCCTGAGCTCCTTCTGCAACATCTTTGCCTACTTCAATCAGGATATTAT TTTCTCCACTTGACAAATAAAAGCAAAATTTTTTTCCCCAACAACATATAGGACCTATTC TCGAGGGAAGAAGAGAAATCGGTGGGAGGAAAGGCAGTAGAGAAAGGGCAAGTACCGTGA AAACCTGCCTGTGTCCCTCAGAAGGTTTGTCCTGGAAACCGGGTGCTGGTGATCTGGCCT TGCCGGCGTTACTGGTCAGTATTTCCCAGGAGTCGTTAAGGCGGGAGAACTTGCTGGGTG TCATGTAATCTGGACTCTTGTTACGGTATCTTGGTGCGTCCCTCTTATAACAACTCCCAA TCCTCAGCAAACTTGTTTTTTATATTTTTGCTTCCTTGTATATTCTTACTACCTATTTTT TGACTTCAAAAGAATGACATCTTTAGAACTATCTCAGAGCCAATAATGGTATGTGCGTTA GATAATTATTACAGTATCCTAAATATAAGCATATTATTTTGAATTGAAATAAATTTCTAT GCTGATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGTCAGTGGGTGAGCCGGGAGCCGAGGAGGTCACCGTGGGGAGGCGGGGCGGGGGCA GCATGGCAGCCTCCTTACGGCTCCGTGGAGCCGCCTCTGGCCTCCTGTACTGGAGCCGCC GGCAGCGGCCGGCAGCGGCCAGCCTTGTAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGA CTCCAGTTGGATTCATTGGTGTAGGCAACATGGGGAATCCAATGGCAAAAAATCTCATGA AACATGGCTATCCACTCATTATTTATGATGTGTTCCCTGATGCATGCAAAGAGTTTCTAG ATGCGGGTGAACAGGTAGTGTCTTCCCCAGCAGATGTGGCTGAAAAAGCTGACAGAATTA TTACAATGTTACCCACCAGTATCAATGCAATAGAAGCTTATTCTGGAGCAAATGGAATTC TAAAAAAAGTGAAGAAAGGCTCATTGTTAATAGATTCCAGTACTATTGATCCTATGATTT CAAAAGAGTTGGCCAAAGAAGTTGAGAAAATGGGAGCAGTTTTCATGGATGCCCCTGTTT CTGGCGGTGTGGGAGCTGCTCGGTCTGGGAACCTCACGTTTATGGTGGGAGGAGTTGAAG AGGAATTTGCTGCTGCCCAAGAGCTGCTGGGATGCATGGGCTCCAATGTGGTGTATTGTG GAGCTGTTGGGACCGGGCAGGCTGCAAAGATATGCAACAACTTGCTGTTAGCTATAAGTA TGATTGGAACTGCTGAAGCTATGAATCTGGGAATCAGGTTAGGGCTTGACCCAAAACTCT TGGCTAAAATCCTGAATATGAGTTCAGGGCGGTGTTGGTCAAGTGACACTTACAATCCTG TACCTGGGGTGATGGATGGAGTTCCCTCGGCTAATAACTATCAGGGCGGATTCGGAACAA CGCTCATGGCTAAGGATCTGGGCCTAGCGCAAGACTCTGCCACCAGCACGAAGAGCCCAA TCCTTCTGGGCAGTCAAGCCCATCAGATCTACAGGCTGATGTGTGCGAAGGGCTACGCAA ACAAAGACTTCTCATCTGTGTTCCAGTTTCTACGAGAGGAGGAGACGTTCTGAGTTTGCC CTTCGGCTGTGGACACTGGGAAACCAAACTCTATCTTGGAGCCGCTTATAGCTCACTCCA CAAGTAAATGGGTTTAATCAAAGGTCACCTGTCTCCTTTTGATTGTCTAGGTCACAGTAA ACCCTGGGATTTTTCACCCATTTTTAACTGCTGCTGCTTTTTACCTATGTAGCAAACACA TATTCTCTGAAATTTTGTTCTTCTGCAAGCCACTGATGGTCTCTGCTAACTAACTTTTGC AGACGTTTGATTCCTGAGCTCCTTCTGCAACATCTTTGCCTACTTCAATCAGGATATTAT TTTCTCCACTTGACAAATAAAAGCAAAATTTTTTTCCCCAACAACATATAGGACCTATTC TCGAGGGAAGAAGAGAAATCGGTGGGAGGAAAGGCAGTAGAGAAAGGGCAAGTACCGTGA AAACCTGCCTGTGTCCCTCAGAAGGTTTGTCCTGGAAACCGGGTGCTGGTGATCTGGCCT TGCCGGCGTTACTGGTCAGTATTTCCCAGGAGTCGTTAAGGCGGGAGAACTTGCTGGGTG TCATGTAATCTGGACTCTTGTTACGGTATCTTGGTGCGTCCCTCTTATAACAACTCCCAA TCCTCAGCAAACTTGTTTTTTATATTTTTGCTTCCTTGTATATTCTTACTACCTATTTTT TGACTTCAAAAGAATGACATCTTTAGAACTATCTCAGAGCCAATAATGGTATGTGCGTTA GATAATTATTACAGTATCCTAAATATAAGCATATTATTTTGAATTGAAATAAATTTCTAT GCTGATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 580-681, + strand, RNAz p=0.997937 | |
| 1447-1566, - strand, RNAz p=0.987601 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 580-681, + strand, RNAz p=0.997937 | |
| 1447-1566, - strand, RNAz p=0.987601 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 153-324, gnl|bosTau2|chr4 (39784920-39785091) | |
| 153-324, gnl|Hg17|chr7 (27462493-27462322) | |
| 153-324, gnl|Mm7|chr6 (52593720-52593549) | |
| 420-548, gnl|bosTau2|chr4 (39802250-39802378) | |
| 420-548, gnl|Hg17|chr7 (27442356-27442228) | |
| 420-548, gnl|Mm7|chr6 (52583473-52583345) | |
| 580-681, gnl|bosTau2|chr4 (39865583-39865684) | |
| 580-681, gnl|canFam2|chr14 (43643367-43643502) | |
| 580-681, gnl|danRer3|chr19 (21570623-21570488) | |
| 580-681, gnl|dasNov1|scaffold_4341 (14667-14532) | |
| 580-681, gnl|echTel1|scaffold_104169 (3678-3813) | |
| 580-681, gnl|fr1|chrUn (24373200-24373335) | |
| 580-681, gnl|galGal2|chr2 (32006897-32007032) | |
| 580-681, gnl|hg17|chr7 (27355826-27355961) | |
| 580-681, gnl|Hg17|chr7 (27355926-27355825) | |
| 580-681, gnl|loxAfr1|scaffold_1723 (99020-99155) | |
| 580-681, gnl|mm7|chr6 (52521149-52521284) | |
| 580-681, gnl|Mm7|chr6 (52521249-52521148) | |
| 580-681, gnl|monDom2|scaffold_57 (468709-468574) | |
| 580-681, gnl|oryCun1|scaffold_199874 (63370-63505) | |
| 580-681, gnl|panTro1|chr6 (28482675-28482810) | |
| 580-681, gnl|rheMac2|chr3 (98689019-98688884) | |
| 580-681, gnl|rn3|chr4 (81146626-81146761) | |
| 580-681, gnl|tetNig1|chr8 (6602420-6602285) | |
| 580-681, gnl|xenTro1|scaffold_29 (2141410-2141545) | |
| 913-1870, gnl|bosTau2|chr4 (39882167-39883140) | |
| 913-1870, gnl|Hg17|chr7 (27339233-27338299) | |
| 913-1870, gnl|Mm7|chr6 (52510434-52509600) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-324, gnl|bosTau2|chr4 (39784920-39785091) | |
| 153-324, gnl|Hg17|chr7 (27462493-27462322) | |
| 153-324, gnl|Mm7|chr6 (52593720-52593549) | |
| 420-548, gnl|bosTau2|chr4 (39802250-39802378) | |
| 420-548, gnl|Hg17|chr7 (27442356-27442228) | |
| 420-548, gnl|Mm7|chr6 (52583473-52583345) | |
| 580-681, gnl|bosTau2|chr4 (39865583-39865684) | |
| 580-681, gnl|canFam2|chr14 (43643367-43643502) | |
| 580-681, gnl|danRer3|chr19 (21570623-21570488) | |
| 580-681, gnl|dasNov1|scaffold_4341 (14667-14532) | |
| 580-681, gnl|echTel1|scaffold_104169 (3678-3813) | |
| 580-681, gnl|fr1|chrUn (24373200-24373335) | |
| 580-681, gnl|galGal2|chr2 (32006897-32007032) | |
| 580-681, gnl|hg17|chr7 (27355826-27355961) | |
| 580-681, gnl|Hg17|chr7 (27355926-27355825) | |
| 580-681, gnl|loxAfr1|scaffold_1723 (99020-99155) | |
| 580-681, gnl|mm7|chr6 (52521149-52521284) | |
| 580-681, gnl|Mm7|chr6 (52521249-52521148) | |
| 580-681, gnl|monDom2|scaffold_57 (468709-468574) | |
| 580-681, gnl|oryCun1|scaffold_199874 (63370-63505) | |
| 580-681, gnl|panTro1|chr6 (28482675-28482810) | |
| 580-681, gnl|rheMac2|chr3 (98689019-98688884) | |
| 580-681, gnl|rn3|chr4 (81146626-81146761) | |
| 580-681, gnl|tetNig1|chr8 (6602420-6602285) | |
| 580-681, gnl|xenTro1|scaffold_29 (2141410-2141545) | |
| 913-1870, gnl|bosTau2|chr4 (39882167-39883140) | |
| 913-1870, gnl|Hg17|chr7 (27339233-27338299) | |
| 913-1870, gnl|Mm7|chr6 (52510434-52509600) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| cki (4.7918) | |
| cut (1.86916) | |
| pro (1.5361) | |
| isp (0.75188) | |
| che (0.68157) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| sme (0.610874) | |
| ldo (0.582016) | |
| kid (0.518941) | |
| tbr (0.462535) | |
| lun (0.451467) | |
| nms (0.427716) | |
| csk (0.422238) | |
| cst (0.420109) | |
| aor (0.390549) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| gul (0.355177) | |
| rec (0.346141) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cty (0.31224) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (4.7918) | |
| cut (1.86916) | |
| pro (1.5361) | |
| isp (0.75188) | |
| che (0.68157) | |
| ssp (0.677599) | |
| vin (0.665115) | |
| sme (0.610874) | |
| ldo (0.582016) | |
| kid (0.518941) | |
| tbr (0.462535) | |
| lun (0.451467) | |
| nms (0.427716) | |
| csk (0.422238) | |
| cst (0.420109) | |
| aor (0.390549) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| gul (0.355177) | |
| rec (0.346141) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cty (0.31224) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) |