Non-Coding RNA Search

Ss1.1-Pig4-TMW8059F23.5

Sequence:


               
               TCATTAAGAGTGACATTACCACGTACACCTTACAAGCTGTGCTAGAATGACTACATTACT
GATCAGGTTACAAGAGCATGAATATCATACTTCTGAGAAAATGTAAGAGATGGGGTGATA
ATGCCATTTGTATATTCTTAGTAAATGGTAGATAGACAAGAATAGGACTGTGAATGACAG
AGGACAAGAGACATGCCCAGGGAGAAAAGTGAAGGTATGGAGACATGGCATTTGGACAAC
TGAAATTAAATGTATCTGTTTCAGATGTCTCGGAGAGTAACTTAGCCAAATTTCATTCAA
GCCAATTAGAAGCTGATATTATCAGTTGCGAGTAAGAGTCTCCAGAGGTTTCCATTCCAA
ACATTTTAGAAACTGGTGTAGCGCTCAGCTTTGCATTTCATATTTCTGAGCAAATCATGA
TTAAATAATCACAAAGAGAAATTAAAGATGGCTGTTTATTAAATATCTCTTTAAAAATGC
ACTCAAGAAAAAACTATTCAGCCTTAATTTTGTATGATAAGGTATGTTGGCGATATGAAA
AAAAAAAAAGGTGACTGTTAATTGTAGGTTTCTTTTTAATTTACATTGTACCAGAAACTC
TAAATCTCATTTCTTCCTTCCAATGCATACTCACCCCTGGCTTTGAATCAGTTGTAAAAA
TACAGGTGTGTCACTTTGTAGATCAACAACTTTAGAATAATGTTGGATCAATTTTATGGT
CACTCTGAATTGTCATGTCATTCATCACATAAAAATGGATGATACTTTATGCCATATTAC
AGTACATTTAGCATCTGTTTTTATTTTGTCTCAGGCAAAGCACCCATGATTGAACTCTAT
TTGGAGGTTAGCAGAGATAGAGATGCATCTTATCTCACCAAAAAATTGGTAAATTGCTTA
ATTTGTGTAATAAATCTGTCTTTTCTTTCTAAATATGATCACAAAAGCATTTTCCATCAG
CCTATTCTTATTAATGTGTCTAAACTACTATCACATTCATTTTTTGTTTTAGTTTCTGAT
AAACATAAGCCACTCCTATTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTAAGAGTGACATTACCACGTACACCTTACAAGCTGTGCTAGAATGACTACATTACT
GATCAGGTTACAAGAGCATGAATATCATACTTCTGAGAAAATGTAAGAGATGGGGTGATA
ATGCCATTTGTATATTCTTAGTAAATGGTAGATAGACAAGAATAGGACTGTGAATGACAG
AGGACAAGAGACATGCCCAGGGAGAAAAGTGAAGGTATGGAGACATGGCATTTGGACAAC
TGAAATTAAATGTATCTGTTTCAGATGTCTCGGAGAGTAACTTAGCCAAATTTCATTCAA
GCCAATTAGAAGCTGATATTATCAGTTGCGAGTAAGAGTCTCCAGAGGTTTCCATTCCAA
ACATTTTAGAAACTGGTGTAGCGCTCAGCTTTGCATTTCATATTTCTGAGCAAATCATGA
TTAAATAATCACAAAGAGAAATTAAAGATGGCTGTTTATTAAATATCTCTTTAAAAATGC
ACTCAAGAAAAAACTATTCAGCCTTAATTTTGTATGATAAGGTATGTTGGCGATATGAAA
AAAAAAAAAGGTGACTGTTAATTGTAGGTTTCTTTTTAATTTACATTGTACCAGAAACTC
TAAATCTCATTTCTTCCTTCCAATGCATACTCACCCCTGGCTTTGAATCAGTTGTAAAAA
TACAGGTGTGTCACTTTGTAGATCAACAACTTTAGAATAATGTTGGATCAATTTTATGGT
CACTCTGAATTGTCATGTCATTCATCACATAAAAATGGATGATACTTTATGCCATATTAC
AGTACATTTAGCATCTGTTTTTATTTTGTCTCAGGCAAAGCACCCATGATTGAACTCTAT
TTGGAGGTTAGCAGAGATAGAGATGCATCTTATCTCACCAAAAAATTGGTAAATTGCTTA
ATTTGTGTAATAAATCTGTCTTTTCTTTCTAAATATGATCACAAAAGCATTTTCCATCAG
CCTATTCTTATTAATGTGTCTAAACTACTATCACATTCATTTTTTGTTTTAGTTTCTGAT
AAACATAAGCCACTCCTATTAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-237, - strand, RNAz p=0.655866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, - strand, RNAz p=0.655866

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1043, gnl|bosTau2|chr24 (35374136-35373092)
               

               
               1-1043, gnl|Hg17|chr18 (50708138-50709164)
               

               
               1-1043, gnl|Mm7|chr18 (70376378-70375383)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1043, gnl|bosTau2|chr24 (35374136-35373092)
               

               
               1-1043, gnl|Hg17|chr18 (50708138-50709164)
               

               
               1-1043, gnl|Mm7|chr18 (70376378-70375383)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	1-1043, gnl\|bosTau2\|chr24 (35374136-35373092)
	1-1043, gnl\|Hg17\|chr18 (50708138-50709164)
	1-1043, gnl\|Mm7\|chr18 (70376378-70375383)

	aor (0.195274)
	pty (0.142714)
	nca (0.136874)
	ret (0.128733)
	thg (0.126791)