Non-Coding RNA Search

Ss1.1-Pig4-TMW8059G03.3

Sequence:


               
               GCAACACACTGAATCAGCCATGTAGTGGATCTGTCAGTTTACAACCTCGAAGGAGCATAG
CATTTAGATTACGTTTGGCCTCTTTTGATAGCAGTGGAAAACTAATATGTAGTAGAACAA
CTGGCTATCAAATACTTACACTTGAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACA
GCAGGCTTCTGATCTTCCCTTTATATATCTGTTGTAACTTCCTGTATATATCGCCTGAAA
AAAGAACTGAAAATAATCGTCATCCAGAAAATCCAGAAAACTGAGGATCCCATCAGTTGG
AAGCAGTAGCACTTTGAAAACTTGTTTGGCCAGCTTTAATTTAATGGCCCTACTGATATT
CACATCTAAGGTGACTAATAATGACAAAGGCCTTATGAACTGTGCAGATAATACAGAAGA
CTATTCTGATCATCATTACATTTCTATGCATATGTGAAAAAACATTTTAAAGCCAAGAAA
ATGTCTGTCAAACCATTTCTGTTATAAAGATGTTGTTGATTCATGCTTTTTAATTTGACA
TCAGTAGAAAATTGCTGTAGGTAAATTTCACAATTCTCTGCAACCAAATATAGGTTTAAT
TTTTAGCTTGAACTTTGATCCTCCTACCTAATGTTAGTAAACTTCAGTTATCCATCTATA
AGTTTTATTTTTATTTGGTTTAAAAAATGCTAAAGGAGTAATTTGGCCAATTATAAATAC
TGTTTCAATTAGTGCATTTAAAGCTGTCCTTTAATTTTTTTCAACTGCTCTTTATGATTC
CTCCTCCTAGTCCAATATTCTTCTAATCTATATATGTTTTTAATCATTAAATTTTTTTTC
ACAGTTTTGAAGACTAAGCTGAGGAACTTTTTATTTAACTTAAGCATTTCCATACTATTG
TATTTTGCTTTTTATTTAGCTTTCTTAGGATTTTAACAACAAAAAAATCAGCTTCAGACT
TTCAAATGCACTTGGAGTGGTGGTGCCGGGAATCTGAGGATATTCTTTTGCCTTACATGG
CCTTTTCTTTGACATTCTGTACAATTTTATTATAAGGTCATAGATTATTTATGGACCAGA
TATTATACTTTAAACATTTCCATATTCTATGATCTTTAGAATTATTTATGTTCAAATTTT
AGTTGGGAATCCTATTTTCTACTTAAGCTCAGGACTCTATAACCTCTGAATTGAGTGCCT
TTAAGTTATACATGCTATTAGAAATCTCATAGTAAATGTAAATAAGGTTGGAGGATATCA
TACAGAAGCTGATAATAAAGCATTAATGTACAAATAGAACTTATTTTTATCAAAATGAGG
TGTACATTTGTCATGATTTATATATGTTGACTGCTTCTGTTTATTGCTATTTCAAAAATA
GCCATGCTCATTATCTTTCAAGTCATAGTGCTTTTTGTGGTTAATGTCTATTTTTAGTAT
GTTTTAAGAATTGGAAATACCTTTATGTATCTGTACAAGTAAGAAATACCCATTTGGAAA
AAGAATAAATAAGCTATTATATAAAATGAAGGAAAAAAAGCCTTGGTGGAAGCCAGAAAT
TTTTTTCAATTTAGATTTTTGTTCCAATTAGATTTAGCTTTTATAATTTATTGCTAGTTT
TTCTTCCCTTGTGATACGTCCACAGATTCATAAGTCACTTTTGTCCTTTCAAAATTCATC
CTCATGGGGAATTTAAAGGAAGCTTTTGAATGTCTCCCTTATCTCCACCCCCAGAACTGT
AGTTTAGGTGTTTTAATACAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACACACTGAATCAGCCATGTAGTGGATCTGTCAGTTTACAACCTCGAAGGAGCATAG
CATTTAGATTACGTTTGGCCTCTTTTGATAGCAGTGGAAAACTAATATGTAGTAGAACAA
CTGGCTATCAAATACTTACACTTGAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACA
GCAGGCTTCTGATCTTCCCTTTATATATCTGTTGTAACTTCCTGTATATATCGCCTGAAA
AAAGAACTGAAAATAATCGTCATCCAGAAAATCCAGAAAACTGAGGATCCCATCAGTTGG
AAGCAGTAGCACTTTGAAAACTTGTTTGGCCAGCTTTAATTTAATGGCCCTACTGATATT
CACATCTAAGGTGACTAATAATGACAAAGGCCTTATGAACTGTGCAGATAATACAGAAGA
CTATTCTGATCATCATTACATTTCTATGCATATGTGAAAAAACATTTTAAAGCCAAGAAA
ATGTCTGTCAAACCATTTCTGTTATAAAGATGTTGTTGATTCATGCTTTTTAATTTGACA
TCAGTAGAAAATTGCTGTAGGTAAATTTCACAATTCTCTGCAACCAAATATAGGTTTAAT
TTTTAGCTTGAACTTTGATCCTCCTACCTAATGTTAGTAAACTTCAGTTATCCATCTATA
AGTTTTATTTTTATTTGGTTTAAAAAATGCTAAAGGAGTAATTTGGCCAATTATAAATAC
TGTTTCAATTAGTGCATTTAAAGCTGTCCTTTAATTTTTTTCAACTGCTCTTTATGATTC
CTCCTCCTAGTCCAATATTCTTCTAATCTATATATGTTTTTAATCATTAAATTTTTTTTC
ACAGTTTTGAAGACTAAGCTGAGGAACTTTTTATTTAACTTAAGCATTTCCATACTATTG
TATTTTGCTTTTTATTTAGCTTTCTTAGGATTTTAACAACAAAAAAATCAGCTTCAGACT
TTCAAATGCACTTGGAGTGGTGGTGCCGGGAATCTGAGGATATTCTTTTGCCTTACATGG
CCTTTTCTTTGACATTCTGTACAATTTTATTATAAGGTCATAGATTATTTATGGACCAGA
TATTATACTTTAAACATTTCCATATTCTATGATCTTTAGAATTATTTATGTTCAAATTTT
AGTTGGGAATCCTATTTTCTACTTAAGCTCAGGACTCTATAACCTCTGAATTGAGTGCCT
TTAAGTTATACATGCTATTAGAAATCTCATAGTAAATGTAAATAAGGTTGGAGGATATCA
TACAGAAGCTGATAATAAAGCATTAATGTACAAATAGAACTTATTTTTATCAAAATGAGG
TGTACATTTGTCATGATTTATATATGTTGACTGCTTCTGTTTATTGCTATTTCAAAAATA
GCCATGCTCATTATCTTTCAAGTCATAGTGCTTTTTGTGGTTAATGTCTATTTTTAGTAT
GTTTTAAGAATTGGAAATACCTTTATGTATCTGTACAAGTAAGAAATACCCATTTGGAAA
AAGAATAAATAAGCTATTATATAAAATGAAGGAAAAAAAGCCTTGGTGGAAGCCAGAAAT
TTTTTTCAATTTAGATTTTTGTTCCAATTAGATTTAGCTTTTATAATTTATTGCTAGTTT
TTCTTCCCTTGTGATACGTCCACAGATTCATAAGTCACTTTTGTCCTTTCAAAATTCATC
CTCATGGGGAATTTAAAGGAAGCTTTTGAATGTCTCCCTTATCTCCACCCCCAGAACTGT
AGTTTAGGTGTTTTAATACAATAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               154-1764, gnl|bosTau2|chr11 (48408238-48406654)
               

               
               154-1764, gnl|Hg17|chr2 (70017690-70019303)
               

               
               154-1764, gnl|Mm7|chr6 (86768139-86766743)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-1764, gnl|bosTau2|chr11 (48408238-48406654)
               

               
               154-1764, gnl|Hg17|chr2 (70017690-70019303)
               

               
               154-1764, gnl|Mm7|chr6 (86768139-86766743)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               kid (0.778412)
               

               
               tes (0.623441)
               

               
               cbl (0.45919)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               tes (0.623441)
               

               
               cbl (0.45919)
               

               
               tra (0.369276)
               

               
               lin (0.291206)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	154-1764, gnl\|bosTau2\|chr11 (48408238-48406654)
	154-1764, gnl\|Hg17\|chr2 (70017690-70019303)
	154-1764, gnl\|Mm7\|chr6 (86768139-86766743)

	kid (0.778412)
	tes (0.623441)
	cbl (0.45919)
	tra (0.369276)
	lin (0.291206)
	mas (0.210305)
	hea (0.204499)
	nje (0.16592)
	fco (0.157208)
	tbr (0.154178)
	liv (0.146284)
	hlv (0.139256)
	ecc (0.115035)
	spc (0.113366)