Ss1.1-Pig4-TMW8059G04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACTGTGGCAGACACTGTGGTCCAAGTAACACAGCGGAGCGTAGGCAGATAGGGCACA AGGAGGCTCCAGCAAGTTGTCACTTGCCAGAGGAAGCGCAGCTAATCTGGAAACAGCATG TACACATCCATCCCCCAGAGCGGCTCTCCGTTCCCAGCCTCGGTGCAGGATCCCGGCCTG CACATATGGCGGGTGGAGAAGTTAAAGCCCGTGCCGGTGGCCCGTGAGAACCAGGGCATC TTCTTCTCCGGAGACTCCTACCTGGTGCTGCACAATGGCCCGGAAGAGCTCTCCCACCTG CACCTGTGGATAGGCCATCAGTCATCTCGGGATGAGCAGGGGGCCTGCGCCATGCTGGCT GTGCACCTCAACACCCTGCTTGGGGAGCGGCCCGTGCAGCACCGAGAGGTGCAGGGCAAT GAGTCCGACCTCTTCATGAGCTACTTCCCACGAGGCCTCAAGTACCAGGAAGGCGGTGTG GAGTCAGCATTTCACAAGACCTCCTCCGGGGCCACCCCAGCTGCCATCAGGAAACTCTAC CAGGTGAAGGGGAAGAAGAACATCCGTGCCACTGAGCGGGCGCTGAGCTGGGACAGCTTC AACACAGGGGACTGCTTCATCCTGGACCTGGGCCAGAACATCTTTGCCTGGTGTGGTGCA AAATCCAACATCCTGGAGCGTAACAAAGCGCGGGACCTGGCCCTGGCCATCCGGGACAGT GAGCGGCAGGGCAAGGCCCAGGTGGAGATTGTCACTGACGGGGAGGAGCCTGCAGACATG ATCCAGGTCCTGGGCCCCAAGCCTACTCTGAAGGAGGGCAACCCCGAGGAAGACCTCACA GCTGACCAGAAAAATGCCCAGGCCGCGGCTCTGTACAAGGTCTCTGATGCCACTGGACAG ATGAACCTGACCAAGGTGGCCGACTCCAGCCCCTTTGCCGTTGAGCTGCTGATACCTGAC GACTGCTTTGTGTTGGACAACGGGCTCTGTGGCAAGATCTACATCTGGAAGGGGCGCAAA GCTAACGAGAGGGAACGGCAGGCGGCCCTCCAAGTGGCTGAGGACTTCATCTCCCGCATG CAGTATGCCCCGAACACTCAGGTGGAGATTCTGCCCCAGGGCCGGGAGAGCCCCATCTTC AAGCAATTCTTCAAGGACTGGAAATGAGGGTGGGTGCCTCCCTGCCCCCACCTCTGGCCT ACTGGCTCCTCCTGCAGCTTCCTGGTCAGCGCTGAGGCGTCCCCCGCGGATTTTCAATAA AGGACACCAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACTGTGGCAGACACTGTGGTCCAAGTAACACAGCGGAGCGTAGGCAGATAGGGCACA AGGAGGCTCCAGCAAGTTGTCACTTGCCAGAGGAAGCGCAGCTAATCTGGAAACAGCATG TACACATCCATCCCCCAGAGCGGCTCTCCGTTCCCAGCCTCGGTGCAGGATCCCGGCCTG CACATATGGCGGGTGGAGAAGTTAAAGCCCGTGCCGGTGGCCCGTGAGAACCAGGGCATC TTCTTCTCCGGAGACTCCTACCTGGTGCTGCACAATGGCCCGGAAGAGCTCTCCCACCTG CACCTGTGGATAGGCCATCAGTCATCTCGGGATGAGCAGGGGGCCTGCGCCATGCTGGCT GTGCACCTCAACACCCTGCTTGGGGAGCGGCCCGTGCAGCACCGAGAGGTGCAGGGCAAT GAGTCCGACCTCTTCATGAGCTACTTCCCACGAGGCCTCAAGTACCAGGAAGGCGGTGTG GAGTCAGCATTTCACAAGACCTCCTCCGGGGCCACCCCAGCTGCCATCAGGAAACTCTAC CAGGTGAAGGGGAAGAAGAACATCCGTGCCACTGAGCGGGCGCTGAGCTGGGACAGCTTC AACACAGGGGACTGCTTCATCCTGGACCTGGGCCAGAACATCTTTGCCTGGTGTGGTGCA AAATCCAACATCCTGGAGCGTAACAAAGCGCGGGACCTGGCCCTGGCCATCCGGGACAGT GAGCGGCAGGGCAAGGCCCAGGTGGAGATTGTCACTGACGGGGAGGAGCCTGCAGACATG ATCCAGGTCCTGGGCCCCAAGCCTACTCTGAAGGAGGGCAACCCCGAGGAAGACCTCACA GCTGACCAGAAAAATGCCCAGGCCGCGGCTCTGTACAAGGTCTCTGATGCCACTGGACAG ATGAACCTGACCAAGGTGGCCGACTCCAGCCCCTTTGCCGTTGAGCTGCTGATACCTGAC GACTGCTTTGTGTTGGACAACGGGCTCTGTGGCAAGATCTACATCTGGAAGGGGCGCAAA GCTAACGAGAGGGAACGGCAGGCGGCCCTCCAAGTGGCTGAGGACTTCATCTCCCGCATG CAGTATGCCCCGAACACTCAGGTGGAGATTCTGCCCCAGGGCCGGGAGAGCCCCATCTTC AAGCAATTCTTCAAGGACTGGAAATGAGGGTGGGTGCCTCCCTGCCCCCACCTCTGGCCT ACTGGCTCCTCCTGCAGCTTCCTGGTCAGCGCTGAGGCGTCCCCCGCGGATTTTCAATAA AGGACACCAGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1099-1205, + strand, RNAz p=0.604463 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1099-1205, + strand, RNAz p=0.604463 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001747, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 134-314, gnl|bosTau2|chr11 (34722792-34722972) | |
| 134-314, gnl|canFam2|chr17 (42698757-42698554) | |
| 134-314, gnl|danRer3|chr5 (14980404-14980248) | |
| 134-314, gnl|dasNov1|scaffold_60737 (6320-6118) | |
| 134-314, gnl|echTel1|scaffold_295192 (48681-48884) | |
| 134-314, gnl|fr1|chrUn (11645816-11645636) | |
| 134-314, gnl|galGal2|chrUn (33700604-33700806) | |
| 134-314, gnl|hg17|chr2 (85540560-85540763) | |
| 134-314, gnl|Hg17|chr2 (85540745-85540565) | |
| 134-314, gnl|loxAfr1|scaffold_3548 (96969-97172) | |
| 134-314, gnl|mm7|chr6 (72573588-72573387) | |
| 134-314, gnl|Mm7|chr6 (72573401-72573581) | |
| 134-314, gnl|monDom2|scaffold_68 (9260607-9260841) | |
| 134-314, gnl|oryCun1|scaffold_200853 (23117-23321) | |
| 134-314, gnl|panTro1|chr12 (88405304-88405507) | |
| 134-314, gnl|rheMac2|chr13 (85969348-85969551) | |
| 134-314, gnl|rn3|chr4 (106101070-106100869) | |
| 134-314, gnl|tetNig1|chrUn_random (46570760-46570608) | |
| 466-636, gnl|bosTau2|chr11 (34723444-34723614) | |
| 466-636, gnl|canFam2|chr17 (42699367-42699179) | |
| 466-636, gnl|danRer3|chr5 (14982412-14982231) | |
| 466-636, gnl|dasNov1|scaffold_60737 (6881-6696) | |
| 466-636, gnl|echTel1|scaffold_295192 (48108-48296) | |
| 466-636, gnl|fr1|chrUn (11647241-11647074) | |
| 466-636, gnl|hg17|chr2 (85539941-85540126) | |
| 466-636, gnl|Hg17|chr2 (85540113-85539946) | |
| 466-636, gnl|loxAfr1|scaffold_4530 (56318-56148) | |
| 466-636, gnl|mm7|chr6 (72574190-72574002) | |
| 466-636, gnl|Mm7|chr6 (72574013-72574183) | |
| 466-636, gnl|monDom2|scaffold_68 (9259746-9259932) | |
| 466-636, gnl|oryCun1|scaffold_200853 (22540-22728) | |
| 466-636, gnl|panTro1|chr12 (88404685-88404870) | |
| 466-636, gnl|rheMac2|chr13 (85968729-85968914) | |
| 466-636, gnl|rn3|chr4 (106101673-106101485) | |
| 466-636, gnl|tetNig1|chrUn_random (46571774-46571607) | |
| 869-1013, gnl|bosTau2|chr11 (34726862-34727006) | |
| 869-1013, gnl|canFam2|chr17 (42701856-42701698) | |
| 869-1013, gnl|danRer3|chr5 (14987105-14986964) | |
| 869-1013, gnl|dasNov1|scaffold_60737 (9672-9521) | |
| 869-1013, gnl|echTel1|scaffold_295192 (45933-46090) | |
| 869-1013, gnl|fr1|chrUn (11647919-11647782) | |
| 869-1013, gnl|hg17|chr2 (85536782-85536937) | |
| 869-1013, gnl|Hg17|chr2 (85536944-85536800) | |
| 869-1013, gnl|loxAfr1|scaffold_3548 (93733-93890) | |
| 869-1013, gnl|mm7|chr6 (72576825-72576668) | |
| 869-1013, gnl|Mm7|chr6 (72576659-72576803) | |
| 869-1013, gnl|monDom2|scaffold_68 (9246088-9246243) | |
| 869-1013, gnl|oryCun1|scaffold_199642 (56506-56368) | |
| 869-1013, gnl|panTro1|chr12 (88401523-88401678) | |
| 869-1013, gnl|rheMac2|chr13 (85965590-85965745) | |
| 869-1013, gnl|rn3|chr4 (106104010-106103853) | |
| 869-1013, gnl|tetNig1|chrUn_random (46572376-46572239) | |
| 1099-1270, gnl|bosTau2|chr11 (34730831-34731001) | |
| 1099-1270, gnl|Hg17|chr2 (85533742-85533558) | |
| 1099-1270, gnl|Mm7|chr6 (72580738-72580900) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-314, gnl|bosTau2|chr11 (34722792-34722972) | |
| 134-314, gnl|canFam2|chr17 (42698757-42698554) | |
| 134-314, gnl|danRer3|chr5 (14980404-14980248) | |
| 134-314, gnl|dasNov1|scaffold_60737 (6320-6118) | |
| 134-314, gnl|echTel1|scaffold_295192 (48681-48884) | |
| 134-314, gnl|fr1|chrUn (11645816-11645636) | |
| 134-314, gnl|galGal2|chrUn (33700604-33700806) | |
| 134-314, gnl|hg17|chr2 (85540560-85540763) | |
| 134-314, gnl|Hg17|chr2 (85540745-85540565) | |
| 134-314, gnl|loxAfr1|scaffold_3548 (96969-97172) | |
| 134-314, gnl|mm7|chr6 (72573588-72573387) | |
| 134-314, gnl|Mm7|chr6 (72573401-72573581) | |
| 134-314, gnl|monDom2|scaffold_68 (9260607-9260841) | |
| 134-314, gnl|oryCun1|scaffold_200853 (23117-23321) | |
| 134-314, gnl|panTro1|chr12 (88405304-88405507) | |
| 134-314, gnl|rheMac2|chr13 (85969348-85969551) | |
| 134-314, gnl|rn3|chr4 (106101070-106100869) | |
| 134-314, gnl|tetNig1|chrUn_random (46570760-46570608) | |
| 466-636, gnl|bosTau2|chr11 (34723444-34723614) | |
| 466-636, gnl|canFam2|chr17 (42699367-42699179) | |
| 466-636, gnl|danRer3|chr5 (14982412-14982231) | |
| 466-636, gnl|dasNov1|scaffold_60737 (6881-6696) | |
| 466-636, gnl|echTel1|scaffold_295192 (48108-48296) | |
| 466-636, gnl|fr1|chrUn (11647241-11647074) | |
| 466-636, gnl|hg17|chr2 (85539941-85540126) | |
| 466-636, gnl|Hg17|chr2 (85540113-85539946) | |
| 466-636, gnl|loxAfr1|scaffold_4530 (56318-56148) | |
| 466-636, gnl|mm7|chr6 (72574190-72574002) | |
| 466-636, gnl|Mm7|chr6 (72574013-72574183) | |
| 466-636, gnl|monDom2|scaffold_68 (9259746-9259932) | |
| 466-636, gnl|oryCun1|scaffold_200853 (22540-22728) | |
| 466-636, gnl|panTro1|chr12 (88404685-88404870) | |
| 466-636, gnl|rheMac2|chr13 (85968729-85968914) | |
| 466-636, gnl|rn3|chr4 (106101673-106101485) | |
| 466-636, gnl|tetNig1|chrUn_random (46571774-46571607) | |
| 869-1013, gnl|bosTau2|chr11 (34726862-34727006) | |
| 869-1013, gnl|canFam2|chr17 (42701856-42701698) | |
| 869-1013, gnl|danRer3|chr5 (14987105-14986964) | |
| 869-1013, gnl|dasNov1|scaffold_60737 (9672-9521) | |
| 869-1013, gnl|echTel1|scaffold_295192 (45933-46090) | |
| 869-1013, gnl|fr1|chrUn (11647919-11647782) | |
| 869-1013, gnl|hg17|chr2 (85536782-85536937) | |
| 869-1013, gnl|Hg17|chr2 (85536944-85536800) | |
| 869-1013, gnl|loxAfr1|scaffold_3548 (93733-93890) | |
| 869-1013, gnl|mm7|chr6 (72576825-72576668) | |
| 869-1013, gnl|Mm7|chr6 (72576659-72576803) | |
| 869-1013, gnl|monDom2|scaffold_68 (9246088-9246243) | |
| 869-1013, gnl|oryCun1|scaffold_199642 (56506-56368) | |
| 869-1013, gnl|panTro1|chr12 (88401523-88401678) | |
| 869-1013, gnl|rheMac2|chr13 (85965590-85965745) | |
| 869-1013, gnl|rn3|chr4 (106104010-106103853) | |
| 869-1013, gnl|tetNig1|chrUn_random (46572376-46572239) | |
| 1099-1270, gnl|bosTau2|chr11 (34730831-34731001) | |
| 1099-1270, gnl|Hg17|chr2 (85533742-85533558) | |
| 1099-1270, gnl|Mm7|chr6 (72580738-72580900) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nep (0.551775) | |
| pla (0.401016) | |
| cly (0.361925) | |
| clu (0.358938) | |
| ton (0.351) | |
| cty (0.31224) | |
| aor (0.195274) | |
| duo (0.172801) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.551775) | |
| pla (0.401016) | |
| cly (0.361925) | |
| clu (0.358938) | |
| ton (0.351) | |
| cty (0.31224) | |
| aor (0.195274) | |
| duo (0.172801) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |