Non-Coding RNA Search

Ss1.1-Pig4-TMW8059G10.5

Sequence:


               
               ATGTTTTTAGTTATTTTTCATTTACTTTTTAGGTAACATTTTTATGACGGTAACATTAAA
ATTACATTCTTCCTGCTTTAAATAGGTCCCTACTTATTTACTGAGGGTGAGTCCCTAATT
TAAAAAAAATTTTTTTGGTGTGTTTTTTTGTTTTTTGGATTTTTTGTTTGTTTGTTTGTT
TGTTTTTCTTTTTTGGCCACAGCATGCAGCACCTTGATGTGGGATCTTAGTTCCCAGACT
AGGCATTTAATGCAGGCTGCAGTGGTGAAAGCGCTGAGTCCTAACCACCACACCACCAGG
GAACTCCTTTAGTGTGCTTTTTTTTTTTAATCAGGTTTATTTTAATTTCTTATAGTTTAA
CTTTCTGACTGTGCTTGTGGCATGCAGAAGTTCCTAGGCCAGGAATTGAACCCAAGTCAC
AGCAGTAACCTGAGCCACAGCAGTGACAACACTGAGTCCTTAACTACTAGGCCACTGGGA
AACTCCTTAAATCAAGTTTAAAATATATTTTTAAGTTGTGTTTGAACATGTTTATATAGG
TTTATGTTTCTATATAAAATGATTTATTTCTTGGAGCTTGATTTTAATGTCTACTTTAAT
TTGTCCAACTAGCAGAAACTCCTTCTGTGGATATGATTCCAAGTGCTAAGAAATTAGGGG
AGCCTATTCGATCAGCTATTCCTTTACATCCACCTTTCCACCCTTCAGAGCCTCGAGCTC
CTTGCCCCATAGGAAAAGAATATTTGCGTTCAAGTCACTGCTCCCCCACCATGAATTCCA
CTGGAGAGGGCACAGCATTTTCTGTGGAACCAGAAAATGGAGTTTTCTTATCTTCCAAGT
TGTCTAAAGATAACGGACAGGAAATGTATCCAGCTCAGGTCCAAGGCTCTAGGACAAGGA
AGCCTCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTTTTAGTTATTTTTCATTTACTTTTTAGGTAACATTTTTATGACGGTAACATTAAA
ATTACATTCTTCCTGCTTTAAATAGGTCCCTACTTATTTACTGAGGGTGAGTCCCTAATT
TAAAAAAAATTTTTTTGGTGTGTTTTTTTGTTTTTTGGATTTTTTGTTTGTTTGTTTGTT
TGTTTTTCTTTTTTGGCCACAGCATGCAGCACCTTGATGTGGGATCTTAGTTCCCAGACT
AGGCATTTAATGCAGGCTGCAGTGGTGAAAGCGCTGAGTCCTAACCACCACACCACCAGG
GAACTCCTTTAGTGTGCTTTTTTTTTTTAATCAGGTTTATTTTAATTTCTTATAGTTTAA
CTTTCTGACTGTGCTTGTGGCATGCAGAAGTTCCTAGGCCAGGAATTGAACCCAAGTCAC
AGCAGTAACCTGAGCCACAGCAGTGACAACACTGAGTCCTTAACTACTAGGCCACTGGGA
AACTCCTTAAATCAAGTTTAAAATATATTTTTAAGTTGTGTTTGAACATGTTTATATAGG
TTTATGTTTCTATATAAAATGATTTATTTCTTGGAGCTTGATTTTAATGTCTACTTTAAT
TTGTCCAACTAGCAGAAACTCCTTCTGTGGATATGATTCCAAGTGCTAAGAAATTAGGGG
AGCCTATTCGATCAGCTATTCCTTTACATCCACCTTTCCACCCTTCAGAGCCTCGAGCTC
CTTGCCCCATAGGAAAAGAATATTTGCGTTCAAGTCACTGCTCCCCCACCATGAATTCCA
CTGGAGAGGGCACAGCATTTTCTGTGGAACCAGAAAATGGAGTTTTCTTATCTTCCAAGT
TGTCTAAAGATAACGGACAGGAAATGTATCCAGCTCAGGTCCAAGGCTCTAGGACAAGGA
AGCCTCCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55645687|ref|XP_511580.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645687|ref|XP_511580.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-344, - strand, RNAz p=0.741876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-344, - strand, RNAz p=0.741876

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               138-370, gnl|bosTau2|chrX (263208-263429)
               


               
               146-364, gnl|bosTau2|chr4 (29671902-29671695)
               


               
               179-360, gnl|bosTau2|chr11 (69788112-69787936)
               


               
               484-817, gnl|bosTau2|chr19 (42653417-42653739)
               

               
               484-817, gnl|Hg17|chr17 (59949159-59949487)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-370, gnl|bosTau2|chrX (263208-263429)
               


               
               146-364, gnl|bosTau2|chr4 (29671902-29671695)
               


               
               179-360, gnl|bosTau2|chr11 (69788112-69787936)
               


               
               484-817, gnl|bosTau2|chr19 (42653417-42653739)
               

               
               484-817, gnl|Hg17|chr17 (59949159-59949487)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	138-370, gnl\|bosTau2\|chrX (263208-263429)

	146-364, gnl\|bosTau2\|chr4 (29671902-29671695)

	179-360, gnl\|bosTau2\|chr11 (69788112-69787936)

	484-817, gnl\|bosTau2\|chr19 (42653417-42653739)
	484-817, gnl\|Hg17\|chr17 (59949159-59949487)