Ss1.1-Pig4-TMW8059G12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCTGACGGCGCCAGGCAGGTCCTCTTGCCCTGGGTGTTACAGGAAGCTGTGGGCCCC TGGAAGGAGCTGGCCCGCAGGTCAGGTAGTGAGCCTTCCTGTGACTAGCGAGCGTGTGCA CCTGGCGCTGGGTGAACATCCGTGGACACAGTTCTGGGTGATTCCTGCCCAAGTGGGCAG TGAACTGGGGGGCGGAGGCCCTCTCTGGGTGTTGGAGTCCAAAGGACCGCGGAGCAGCTT GGGTCCCTTTGGGGTGGGAGCCATACCTGGGAGCCCAGATGTCCTGTCTAGGTCAGGCTG GCTTGGCCACCACTGAAAATAAGCAATAAGTCAGGTGTCCTGGTTCTGCAGGTCGCCTGC AAACTGACCCAGGGAAGAACAGCCTCAAAGGGACCTTTCCCTGCTGGAAGGAAGCGACCC TGTCCTGACTTCTGCAGGGGTGTCCAGGGAGTGGGACAGGTGTTTCCGCGGGAGGCAGCC CCGGGCGGATGCTGGTGTCTCCTTTCTGCCCCTGCCCATTCCCCGGAGCCAGCCTCACAT GGGAGTGGCTTTCTAGGACAGCACTGTACCTGTGACAGTCACCTCGAACATAAGTTGCTG AAAAGCCTGCAGCACTTCTGCCTGCTTCTCACCGGGCTCAGGGTGAGGGCGCGGCAGGAG CCCGTGGCTGGGGGGGGGTCACAGGGGCCAGCTCAGGGCGAGTCCCAGCTCTGCCACGAG CAGGGAGGTGACACTGGCAACCCTCCTCCCATCTGGAGCTTTAGCTCTGAAAGCTTGTGG TGGGGTGAACTCTCCTCAATCCTTTTCTGTTTCACATCCTCTGATTCTAGATCCTAAAGT CCCCGTGGCACCTGTGCTGTGGCTTCCGTTCCCACTGTGATGGATGTCACCCTTCCAGCC TCATCCCAGGTGGCCAAGCCCATCCTGGAATCGGAACCCGCTGGGCACATTTTTTAGCCA CACATCAGTGTTTAAAGAGAAAAAAAGTGACCTTTTTTTTTTTTTTTGGGTCCTTGAAAA CTTGAGCGGAAACTGCATACTACTGATCTTTTTTTTTTAAAGAAATGAAATGCATGACTG CAGAGCGGTAGAGGTGTATATTTTTCATAACGCGGGGGACCTATTTGTGCTGCTCTCTGG GAACGGGCGGGTCTCCTGGTCCCTGTCCCCAGGCCGGCAGCTCTACCTTGGGTAGGACGC GACAGCCCCGATCACAGGGGCCCGCCCCTCCCCGGCTCCGGGCGGAGCTGGGAGCCCTGG GCTCGGTGCCGCGTCTACCTTCTCTTGAACCACTTTGATTTGGGGAGAGAGAAAGAAATA GAACTTTTGATAGTGTGGTAAAAACCTTGATTTGAACTATTTTAGTAAAAGGAGTAACAG AGAAGTTTGTGATAGTGTCTACTTTGCGCTAGAGAAATAAAGGCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCTGACGGCGCCAGGCAGGTCCTCTTGCCCTGGGTGTTACAGGAAGCTGTGGGCCCC TGGAAGGAGCTGGCCCGCAGGTCAGGTAGTGAGCCTTCCTGTGACTAGCGAGCGTGTGCA CCTGGCGCTGGGTGAACATCCGTGGACACAGTTCTGGGTGATTCCTGCCCAAGTGGGCAG TGAACTGGGGGGCGGAGGCCCTCTCTGGGTGTTGGAGTCCAAAGGACCGCGGAGCAGCTT GGGTCCCTTTGGGGTGGGAGCCATACCTGGGAGCCCAGATGTCCTGTCTAGGTCAGGCTG GCTTGGCCACCACTGAAAATAAGCAATAAGTCAGGTGTCCTGGTTCTGCAGGTCGCCTGC AAACTGACCCAGGGAAGAACAGCCTCAAAGGGACCTTTCCCTGCTGGAAGGAAGCGACCC TGTCCTGACTTCTGCAGGGGTGTCCAGGGAGTGGGACAGGTGTTTCCGCGGGAGGCAGCC CCGGGCGGATGCTGGTGTCTCCTTTCTGCCCCTGCCCATTCCCCGGAGCCAGCCTCACAT GGGAGTGGCTTTCTAGGACAGCACTGTACCTGTGACAGTCACCTCGAACATAAGTTGCTG AAAAGCCTGCAGCACTTCTGCCTGCTTCTCACCGGGCTCAGGGTGAGGGCGCGGCAGGAG CCCGTGGCTGGGGGGGGGTCACAGGGGCCAGCTCAGGGCGAGTCCCAGCTCTGCCACGAG CAGGGAGGTGACACTGGCAACCCTCCTCCCATCTGGAGCTTTAGCTCTGAAAGCTTGTGG TGGGGTGAACTCTCCTCAATCCTTTTCTGTTTCACATCCTCTGATTCTAGATCCTAAAGT CCCCGTGGCACCTGTGCTGTGGCTTCCGTTCCCACTGTGATGGATGTCACCCTTCCAGCC TCATCCCAGGTGGCCAAGCCCATCCTGGAATCGGAACCCGCTGGGCACATTTTTTAGCCA CACATCAGTGTTTAAAGAGAAAAAAAGTGACCTTTTTTTTTTTTTTTGGGTCCTTGAAAA CTTGAGCGGAAACTGCATACTACTGATCTTTTTTTTTTAAAGAAATGAAATGCATGACTG CAGAGCGGTAGAGGTGTATATTTTTCATAACGCGGGGGACCTATTTGTGCTGCTCTCTGG GAACGGGCGGGTCTCCTGGTCCCTGTCCCCAGGCCGGCAGCTCTACCTTGGGTAGGACGC GACAGCCCCGATCACAGGGGCCCGCCCCTCCCCGGCTCCGGGCGGAGCTGGGAGCCCTGG GCTCGGTGCCGCGTCTACCTTCTCTTGAACCACTTTGATTTGGGGAGAGAGAAAGAAATA GAACTTTTGATAGTGTGGTAAAAACCTTGATTTGAACTATTTTAGTAAAAGGAGTAACAG AGAAGTTTGTGATAGTGTCTACTTTGCGCTAGAGAAATAAAGGCCTTT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 688-792, - strand, RNAz p=0.938704 | |
| 866-955, - strand, RNAz p=0.747601 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 688-792, - strand, RNAz p=0.938704 | |
| 866-955, - strand, RNAz p=0.747601 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 240-447, gnl|bosTau2|chr7 (31757154-31757359) | |
| 240-447, gnl|canFam2|chr8 (70967193-70967585) | |
| 240-447, gnl|canFam2|chr8 (70967109-70967732) | |
| 240-447, gnl|dasNov1|scaffold_146918 (3617-3319) | |
| 240-447, gnl|dasNov1|scaffold_146918 (3625-3196) | |
| 240-447, gnl|echTel1|scaffold_299536 (40917-41286) | |
| 240-447, gnl|hg17|chr14 (99048962-99049344) | |
| 240-447, gnl|Hg17|chr14 (99049364-99049160) | |
| 240-447, gnl|hg17|chr9 (74622708-74623317) | |
| 240-447, gnl|loxAfr1|scaffold_61948 (12592-12945) | |
| 240-447, gnl|mm7|chr12 (105725466-105725746) | |
| 240-447, gnl|mm7|chr12 (105725434-105725872) | |
| 240-447, gnl|oryCun1|scaffold_174614 (54692-55217) | |
| 240-447, gnl|oryCun1|scaffold_185774 (3997-3700) | |
| 240-447, gnl|panTro1|chr11 (58454782-58455391) | |
| 240-447, gnl|panTro1|chr15 (99547003-99547385) | |
| 240-447, gnl|rheMac2|chr15 (83557815-83558424) | |
| 240-447, gnl|rheMac2|chr7 (162776311-162776694) | |
| 240-447, gnl|rn3|chr6 (132576894-132577208) | |
| 240-447, gnl|rn3|chr6 (132576863-132577322) | |
| 523-1424, gnl|bosTau2|chr7 (31757356-31758292) | |
| 523-1424, gnl|Hg17|chr14 (99049163-99048140) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 240-447, gnl|bosTau2|chr7 (31757154-31757359) | |
| 240-447, gnl|canFam2|chr8 (70967193-70967585) | |
| 240-447, gnl|canFam2|chr8 (70967109-70967732) | |
| 240-447, gnl|dasNov1|scaffold_146918 (3617-3319) | |
| 240-447, gnl|dasNov1|scaffold_146918 (3625-3196) | |
| 240-447, gnl|echTel1|scaffold_299536 (40917-41286) | |
| 240-447, gnl|hg17|chr14 (99048962-99049344) | |
| 240-447, gnl|Hg17|chr14 (99049364-99049160) | |
| 240-447, gnl|hg17|chr9 (74622708-74623317) | |
| 240-447, gnl|loxAfr1|scaffold_61948 (12592-12945) | |
| 240-447, gnl|mm7|chr12 (105725466-105725746) | |
| 240-447, gnl|mm7|chr12 (105725434-105725872) | |
| 240-447, gnl|oryCun1|scaffold_174614 (54692-55217) | |
| 240-447, gnl|oryCun1|scaffold_185774 (3997-3700) | |
| 240-447, gnl|panTro1|chr11 (58454782-58455391) | |
| 240-447, gnl|panTro1|chr15 (99547003-99547385) | |
| 240-447, gnl|rheMac2|chr15 (83557815-83558424) | |
| 240-447, gnl|rheMac2|chr7 (162776311-162776694) | |
| 240-447, gnl|rn3|chr6 (132576894-132577208) | |
| 240-447, gnl|rn3|chr6 (132576863-132577322) | |
| 523-1424, gnl|bosTau2|chr7 (31757356-31758292) | |
| 523-1424, gnl|Hg17|chr14 (99049163-99048140) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fbs (0.175346) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) |