Ss1.1-Pig4-TMW8059G15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCGGAGGGAGCAGCGGGATGGAGGTGGATGCAGCAGGTAACCGACCGGGAGGGAGCGG CTTCTGGAGACGCCCTTGGGGCGCGTCAAGGCCTTCCTGGACTCCCGGGGAAGTCGGGAG GGCGGGTCAGCGGCGCGTTCCCTGGGATAACTTGCGGGAGGGATGTATCTGGCGGGCGCG GGGGAAATGGCGGCGGCGGCTGCGGCGAACGGGACCGGAGGGAGCAGCGGGATGGAGGTG GATGCAGCAGTCGTCCCCAGCGTGATGGCCTCCGGAGTGACTGGCAGTGTTTCAGTCGCC CTTCACCCCCTCGTCATTCTCAACATCTCAGACCATTGGATTCGCATGCGCTCCCAGGAG GGGCGGCCTATGCAGGTGATTGGGGCTCTGATCGGGAAGCAGGAGGGCCGAAATATCGAG GTGATGAACTCCTTTGAGCTGCTGTCCCACACCGTGGAAGAGAAGATTATCATTGACAAG GAATATTATTACACCAAGGAGGAGCAGTTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTG GGTTGGTATACCACAGGGGGACCGCCTGACCCCTCTGATATCCACGTCCATAAGCAGGTG TGCGAGATAATTGAGAGCCCTTTGTTTCTTAAGTTGAACCCTATGACTAAGCACACAGAT CTTCCGGTCAGCGTCTTTGAGTCTGTTATAGATATCATCAATGGAGAGGCCACGATGCTT TTTGCTGAGCTGACCTATACCCTGGCCACAGAGGAGGCTGAACGCATTGGTGTAGATCAT GTGGCCCGAATGACAGCAACAGGCAGCGGAGAGAACTCCACTGTGGCGGAACACCTGATT GCGCAGCACAGCGCCATCAAGATGCTGCACAGCCGCGTCAAGCTCATCTTGGAGTATGTC AAGGCCTCTGAAGCAGGAGAGGTCCCCTTTAACCATGAGATCCTGCGGGAGGCCTATGCT CTGTGTCACTGCCTCCCAGTGCTCAGCACTGATAAGTTCAAGACAGACTTTTATGATCAA TGCAATGACGTGGGACTCATGGCCTACCTAGGCACCATCACCAAAACGTGCAATACCATG AACCAGTTCGTGAACAAGTTCAACGTCCTCTATGACCGACAAGGCATCGGCAGGCGGATG CGGGGGCTCTTCTTCTGACAAGAGGGTACTTGAAGGGGTGATGCACCAGGGTCGGACAAC TGTCAAGGGGAGGGGTGCTCTACTCCCTTTAGAGAAACCAGTCACTAATAAAGGGGAGCA GCCCCTCAGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCGGAGGGAGCAGCGGGATGGAGGTGGATGCAGCAGGTAACCGACCGGGAGGGAGCGG CTTCTGGAGACGCCCTTGGGGCGCGTCAAGGCCTTCCTGGACTCCCGGGGAAGTCGGGAG GGCGGGTCAGCGGCGCGTTCCCTGGGATAACTTGCGGGAGGGATGTATCTGGCGGGCGCG GGGGAAATGGCGGCGGCGGCTGCGGCGAACGGGACCGGAGGGAGCAGCGGGATGGAGGTG GATGCAGCAGTCGTCCCCAGCGTGATGGCCTCCGGAGTGACTGGCAGTGTTTCAGTCGCC CTTCACCCCCTCGTCATTCTCAACATCTCAGACCATTGGATTCGCATGCGCTCCCAGGAG GGGCGGCCTATGCAGGTGATTGGGGCTCTGATCGGGAAGCAGGAGGGCCGAAATATCGAG GTGATGAACTCCTTTGAGCTGCTGTCCCACACCGTGGAAGAGAAGATTATCATTGACAAG GAATATTATTACACCAAGGAGGAGCAGTTTAAACAGGTGTTCAAGGAGCTGGAGTTTCTG GGTTGGTATACCACAGGGGGACCGCCTGACCCCTCTGATATCCACGTCCATAAGCAGGTG TGCGAGATAATTGAGAGCCCTTTGTTTCTTAAGTTGAACCCTATGACTAAGCACACAGAT CTTCCGGTCAGCGTCTTTGAGTCTGTTATAGATATCATCAATGGAGAGGCCACGATGCTT TTTGCTGAGCTGACCTATACCCTGGCCACAGAGGAGGCTGAACGCATTGGTGTAGATCAT GTGGCCCGAATGACAGCAACAGGCAGCGGAGAGAACTCCACTGTGGCGGAACACCTGATT GCGCAGCACAGCGCCATCAAGATGCTGCACAGCCGCGTCAAGCTCATCTTGGAGTATGTC AAGGCCTCTGAAGCAGGAGAGGTCCCCTTTAACCATGAGATCCTGCGGGAGGCCTATGCT CTGTGTCACTGCCTCCCAGTGCTCAGCACTGATAAGTTCAAGACAGACTTTTATGATCAA TGCAATGACGTGGGACTCATGGCCTACCTAGGCACCATCACCAAAACGTGCAATACCATG AACCAGTTCGTGAACAAGTTCAACGTCCTCTATGACCGACAAGGCATCGGCAGGCGGATG CGGGGGCTCTTCTTCTGACAAGAGGGTACTTGAAGGGGTGATGCACCAGGGTCGGACAAC TGTCAAGGGGAGGGGTGCTCTACTCCCTTTAGAGAAACCAGTCACTAATAAAGGGGAGCA GCCCCTCAGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 707-823, - strand, RNAz p=0.536948 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 707-823, - strand, RNAz p=0.536948 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-382, gnl|bosTau2|chr25 (33173553-33173937) | |
| 1-382, gnl|Hg17|chr7 (99331303-99331696) | |
| 1-382, gnl|Mm7|chr5 (137106666-137107025) | |
| 707-823, gnl|bosTau2|chr25 (33175447-33175563) | |
| 707-823, gnl|Hg17|chr7 (99333310-99333426) | |
| 707-823, gnl|Mm7|chr5 (137108649-137108765) | |
| 914-1017, gnl|bosTau2|chr25 (33175999-33176102) | |
| 914-1017, gnl|canFam2|chr6 (12507938-12507824) | |
| 914-1017, gnl|danRer3|chr19 (59502624-59502734) | |
| 914-1017, gnl|dasNov1|scaffold_41458 (17504-17390) | |
| 914-1017, gnl|echTel1|scaffold_189847 (8618-8713) | |
| 914-1017, gnl|fr1|chrUn (300645803-300645695) | |
| 914-1017, gnl|hg17|chr7 (99333692-99333806) | |
| 914-1017, gnl|Hg17|chr7 (99333691-99333794) | |
| 914-1017, gnl|loxAfr1|scaffold_83963 (5186-5072) | |
| 914-1017, gnl|mm7|chr5 (137109028-137109144) | |
| 914-1017, gnl|Mm7|chr5 (137109027-137109130) | |
| 914-1017, gnl|monDom2|scaffold_66 (1970219-1970333) | |
| 914-1017, gnl|oryCun1|scaffold_193147 (3482-3596) | |
| 914-1017, gnl|panTro1|chr6 (101116143-101116257) | |
| 914-1017, gnl|rheMac2|chr3 (47370603-47370717) | |
| 914-1017, gnl|rn3|chr12 (17595878-17595994) | |
| 914-1017, gnl|tetNig1|chr1 (5472407-5472539) | |
| 914-1017, gnl|xenTro1|scaffold_814 (506268-506382) | |
| 1018-1272, gnl|bosTau2|chr25 (33176183-33176430) | |
| 1018-1272, gnl|Hg17|chr7 (99333923-99334180) | |
| 1018-1272, gnl|Mm7|chr5 (137109257-137109506) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-382, gnl|bosTau2|chr25 (33173553-33173937) | |
| 1-382, gnl|Hg17|chr7 (99331303-99331696) | |
| 1-382, gnl|Mm7|chr5 (137106666-137107025) | |
| 707-823, gnl|bosTau2|chr25 (33175447-33175563) | |
| 707-823, gnl|Hg17|chr7 (99333310-99333426) | |
| 707-823, gnl|Mm7|chr5 (137108649-137108765) | |
| 914-1017, gnl|bosTau2|chr25 (33175999-33176102) | |
| 914-1017, gnl|canFam2|chr6 (12507938-12507824) | |
| 914-1017, gnl|danRer3|chr19 (59502624-59502734) | |
| 914-1017, gnl|dasNov1|scaffold_41458 (17504-17390) | |
| 914-1017, gnl|echTel1|scaffold_189847 (8618-8713) | |
| 914-1017, gnl|fr1|chrUn (300645803-300645695) | |
| 914-1017, gnl|hg17|chr7 (99333692-99333806) | |
| 914-1017, gnl|Hg17|chr7 (99333691-99333794) | |
| 914-1017, gnl|loxAfr1|scaffold_83963 (5186-5072) | |
| 914-1017, gnl|mm7|chr5 (137109028-137109144) | |
| 914-1017, gnl|Mm7|chr5 (137109027-137109130) | |
| 914-1017, gnl|monDom2|scaffold_66 (1970219-1970333) | |
| 914-1017, gnl|oryCun1|scaffold_193147 (3482-3596) | |
| 914-1017, gnl|panTro1|chr6 (101116143-101116257) | |
| 914-1017, gnl|rheMac2|chr3 (47370603-47370717) | |
| 914-1017, gnl|rn3|chr12 (17595878-17595994) | |
| 914-1017, gnl|tetNig1|chr1 (5472407-5472539) | |
| 914-1017, gnl|xenTro1|scaffold_814 (506268-506382) | |
| 1018-1272, gnl|bosTau2|chr25 (33176183-33176430) | |
| 1018-1272, gnl|Hg17|chr7 (99333923-99334180) | |
| 1018-1272, gnl|Mm7|chr5 (137109257-137109506) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| cov (0.396458) | |
| fcc (0.39557) | |
| ton (0.351) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| fcc (0.39557) | |
| ton (0.351) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ste (0.135208) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |