Non-Coding RNA Search

Ss1.1-Pig4-TMW8059G17.3

Sequence:


               
               CAGCACCTGATCCAGAACCCCCCCAAAGACTAATGGTCGTGGGGATGCTGGAGATGTGGG
GTGGCAGAGGCAGCAGTGCACCAGGAGGACGGGGCAGTGGACCCATGAACAGCTCTACCA
GCTCCACGCCTTTGGAAGCTAGAGTTATTGGGGAGCGTGAGGCTCCACCCCAGACTTAAT
ATCCATTGAAGTTTCACCTCAGGTGTTGTGTTCTGTGTGTCCTGGTTAAGTGTCCCATGG
AAGGAGGAAGTCTCCACGTCAGAACCCAGCCCTAGGCTGTTTACCTCTAAAGTGGTGCTA
ACTGTGGGGCCCAGGGTGCTTTGCTCCTGGGAAAGCCTTTTGACTCTCAAGGGGCAGGGC
GTACTGGGAAATGTAGTTTCCCAAACTGCCTTATCACTAGGGCGGCCATATGTTCCATTT
TTTTATGCCTTTTGTTTTCAAAAACAGCTCCCTCTTTCCCTCTCAGAAGTATCCTGTTGG
ATGATAGATAACGTACATGATCCCATGACATCTCTCAGACTCTGCTTTTGGCTCAGAGTC
TACATCTAGTCTGTGTTGGGATATCACCTGTTCTTCACCTTGACTTCCAGAGGCGCCATC
CCTGGTGAGGGTTTGTTCTCAGGGCCCCAGGGCAGTAGAGACAAGAGAGTGTGACTTGGA
AATCCATTTTTCTGATTTAGGAAAGCAGTCTCTTTCCTAAAGTGATAGAGGATTTATTTA
ATTTAGATCCCATTTGGTAGCCTACAAAAGAATGTACGGTGTTTTAATGGTTTTTAGTCT
TCTACTTTGCTAAACCAAGCCTCTAAATCTCAAATTATTCCCCTGATAAATTTTTATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACCTGATCCAGAACCCCCCCAAAGACTAATGGTCGTGGGGATGCTGGAGATGTGGG
GTGGCAGAGGCAGCAGTGCACCAGGAGGACGGGGCAGTGGACCCATGAACAGCTCTACCA
GCTCCACGCCTTTGGAAGCTAGAGTTATTGGGGAGCGTGAGGCTCCACCCCAGACTTAAT
ATCCATTGAAGTTTCACCTCAGGTGTTGTGTTCTGTGTGTCCTGGTTAAGTGTCCCATGG
AAGGAGGAAGTCTCCACGTCAGAACCCAGCCCTAGGCTGTTTACCTCTAAAGTGGTGCTA
ACTGTGGGGCCCAGGGTGCTTTGCTCCTGGGAAAGCCTTTTGACTCTCAAGGGGCAGGGC
GTACTGGGAAATGTAGTTTCCCAAACTGCCTTATCACTAGGGCGGCCATATGTTCCATTT
TTTTATGCCTTTTGTTTTCAAAAACAGCTCCCTCTTTCCCTCTCAGAAGTATCCTGTTGG
ATGATAGATAACGTACATGATCCCATGACATCTCTCAGACTCTGCTTTTGGCTCAGAGTC
TACATCTAGTCTGTGTTGGGATATCACCTGTTCTTCACCTTGACTTCCAGAGGCGCCATC
CCTGGTGAGGGTTTGTTCTCAGGGCCCCAGGGCAGTAGAGACAAGAGAGTGTGACTTGGA
AATCCATTTTTCTGATTTAGGAAAGCAGTCTCTTTCCTAAAGTGATAGAGGATTTATTTA
ATTTAGATCCCATTTGGTAGCCTACAAAAGAATGTACGGTGTTTTAATGGTTTTTAGTCT
TCTACTTTGCTAAACCAAGCCTCTAAATCTCAAATTATTCCCCTGATAAATTTTTATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-435, + strand, RNAz p=0.999749

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-435, + strand, RNAz p=0.999749

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               281-417, DB818568 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818568.1|), blast E-value=0, identity=100% 
               

               
               281-409, 4073771 BARC 10BOV Bos taurus cDNA clone 10BOV25_K12 3', mRNA 
(gb|CK948681.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 4112167 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 3', mRNA 
(gb|CK980456.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 4112551 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 5', mRNA 
(gb|CK980703.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 001017BEMN049558HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY158692.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 1616547 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726713.1|), 
blast E-value=2e-22, identity=86.05%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               281-417, DB818568 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818568.1|), blast E-value=0, identity=100% 
               

               
               281-409, 4073771 BARC 10BOV Bos taurus cDNA clone 10BOV25_K12 3', mRNA 
(gb|CK948681.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 4112167 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 3', mRNA 
(gb|CK980456.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 4112551 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 5', mRNA 
(gb|CK980703.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 001017BEMN049558HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY158692.1|), blast E-value=2e-22, identity=86.05% 
               

               
               281-409, 1616547 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|EB726713.1|), 
blast E-value=2e-22, identity=86.05%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-840, gnl|bosTau2|chr3 (11065222-11064411)
               

               
               1-840, gnl|Hg17|chr1 (153506246-153504766)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr3 (11065222-11064411)
               

               
               1-840, gnl|Hg17|chr1 (153506246-153504766)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.543183)
               

               
               nms (0.213858)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               nms (0.213858)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	281-417, DB818568 full-length enriched swine cDNA library, adult thymus Sus (dbj\|DB818568.1\|), blast E-value=0, identity=100%
	281-409, 4073771 BARC 10BOV Bos taurus cDNA clone 10BOV25_K12 3', mRNA (gb\|CK948681.1\|), blast E-value=2e-22, identity=86.05%
	281-409, 4112167 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 3', mRNA (gb\|CK980456.1\|), blast E-value=2e-22, identity=86.05%
	281-409, 4112551 BARC 9BOV Bos taurus cDNA clone 9BOV41_K06 5', mRNA (gb\|CK980703.1\|), blast E-value=2e-22, identity=86.05%
	281-409, 001017BEMN049558HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY158692.1\|), blast E-value=2e-22, identity=86.05%
	281-409, 1616547 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|EB726713.1\|), blast E-value=2e-22, identity=86.05%

	1-840, gnl\|bosTau2\|chr3 (11065222-11064411)
	1-840, gnl\|Hg17\|chr1 (153506246-153504766)

	fce (0.543183)
	nms (0.213858)
	spl (0.143184)
	pla (0.133672)
	cov (0.132153)