Ss1.1-Pig4-TMW8059G20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGGCCTCTCTGGAAATTGTCCCGGGTGTTCGCCGCTGGAGCTCCGGGTCGAGAGGAC GAGGTGCCGCTGCCGGGAGAGTCTTCCGCTACCGCCGGCTCCCGGAGCCCAGCCCTTTCC TAACCCAACCCAACCCTCTCCAGTCCCAGCCGCCAAGGCCCGTCCCTGCCGCGGACCCCG GCTTTACCATGAATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTCCTGC TCCTGGTAACTTGGGTTTTTACTCCTGTAACACCTGAAATAACAAGTCTTGATACAGAGA ATATAGATGACATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGATTGGT GTCGTTTTAGCCAGATGTTGCACCCAATATTTGAAGAAGCCTCCAATGTCATTAAGGAAG AATATCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGCGATCAGCACTCTGATA TAGCCCAGAGATATAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGA TGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCACTTGCAGATTACATCAGGC AACAAAAAAGTGACCCCATTCAAGAACTTCATGACTTAGCAGAAATCACTACTCTTGATC GCAGCAAAAGAAATATCATTGGATACTTTGAGCAGAAGGATTCAGAAAACTACAGAGTTT TTGAAAGAGTAGCAAAAATTTTGCATGATGATTGTACCTTCCTTTCTGCATTTGGGGCTG TCTCAAAACCAGAAAGATACAGTGGAGACAACATAGTCTACAAACCACCAGGGCATTCTG CTCCAGATATGGTGTACTTGGGATATATGACAAATTTTGATGGGACTTTCAATTGGATTC AAGATAAATGTGTTCCACTTGTTCGAGAAATAACATTTGAAAATGGAGAGGAATTGACAG AAGAAGGACTGCCTTTTCTCATACTCTTCCACATGAAAGAAGATACAGAAAGTTTAGAAA TATTCCAGAATGAAGTAGCCCGACAGTTAATAAGTGAAAAAGGTACGATAAACTTTTTAC ATGCTGACTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATT GCCCTGTAATAGCTATCGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAGAGATG TATTAATCCCTGGAAAACTCAAGCAGTTCGTTTTTGACTTACATTCTGGAAAACTGCACA GAGAATTCCATCATGGTCCTGACCCAACTGATACAGCCCCAGGACAGGAAGTCCAAGATG TAGCAAGCAGCCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATA CTTTATTGAGGGATCGAGATGAGCTTTAAAAACTTGAGAAACAATTTGCAAGCCTTTCAA ACAGCAGCATCAACTTACATGGTGGAAATAGTAAACCTATATTTTCATAATTCTATGTGT ATTTTTATTTTGAATAAACTGAAAGAAGTTTTGGGTTTTTAATTTTTTTTCTCCCCGACT CAAAATGCATTGTCATTTACTATAGCCTCTTTTTAAAAATCTGCTAGGGTTAAAAAATAA ATAAACAGAGGCCTATCTTTGCTTTAAATCTGTCCTGTAAAATTTTTATAAATCAAATGA AAGGTGACATTGCCAGAAATAGACCATTAACTTGCACTACTAGGTTAGGGAGGACTTAGG GATGTTTCCTGTGTAGTATGTGCTTTTCTTCCTTTTCTTTACATATGATCAACTCTGTTG GTATTTTACTTATCACATTTCTCAAAGCTAAGGGGGTATACATTCTGGATACTTGGGGGA GGGAATAAATTAAAATTTTCACACTGTGTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGGCCTCTCTGGAAATTGTCCCGGGTGTTCGCCGCTGGAGCTCCGGGTCGAGAGGAC GAGGTGCCGCTGCCGGGAGAGTCTTCCGCTACCGCCGGCTCCCGGAGCCCAGCCCTTTCC TAACCCAACCCAACCCTCTCCAGTCCCAGCCGCCAAGGCCCGTCCCTGCCGCGGACCCCG GCTTTACCATGAATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTCCTGC TCCTGGTAACTTGGGTTTTTACTCCTGTAACACCTGAAATAACAAGTCTTGATACAGAGA ATATAGATGACATTTTAAACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGATTGGT GTCGTTTTAGCCAGATGTTGCACCCAATATTTGAAGAAGCCTCCAATGTCATTAAGGAAG AATATCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGCGATCAGCACTCTGATA TAGCCCAGAGATATAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGA TGATGAAGAGAGAATACAGGGGTCAGCGATCAGTGAAAGCACTTGCAGATTACATCAGGC AACAAAAAAGTGACCCCATTCAAGAACTTCATGACTTAGCAGAAATCACTACTCTTGATC GCAGCAAAAGAAATATCATTGGATACTTTGAGCAGAAGGATTCAGAAAACTACAGAGTTT TTGAAAGAGTAGCAAAAATTTTGCATGATGATTGTACCTTCCTTTCTGCATTTGGGGCTG TCTCAAAACCAGAAAGATACAGTGGAGACAACATAGTCTACAAACCACCAGGGCATTCTG CTCCAGATATGGTGTACTTGGGATATATGACAAATTTTGATGGGACTTTCAATTGGATTC AAGATAAATGTGTTCCACTTGTTCGAGAAATAACATTTGAAAATGGAGAGGAATTGACAG AAGAAGGACTGCCTTTTCTCATACTCTTCCACATGAAAGAAGATACAGAAAGTTTAGAAA TATTCCAGAATGAAGTAGCCCGACAGTTAATAAGTGAAAAAGGTACGATAAACTTTTTAC ATGCTGACTGTGACAAATTTAGACATCCTCTTCTGCACATACAGAAAACTCCAGCAGATT GCCCTGTAATAGCTATCGACAGCTTTAGGCATATGTATGTGTTTGGAGACTTCAGAGATG TATTAATCCCTGGAAAACTCAAGCAGTTCGTTTTTGACTTACATTCTGGAAAACTGCACA GAGAATTCCATCATGGTCCTGACCCAACTGATACAGCCCCAGGACAGGAAGTCCAAGATG TAGCAAGCAGCCCACCTGAGAGCTCCTTCCAGAAACTAGCACCCAGTGAATATAGGTATA CTTTATTGAGGGATCGAGATGAGCTTTAAAAACTTGAGAAACAATTTGCAAGCCTTTCAA ACAGCAGCATCAACTTACATGGTGGAAATAGTAAACCTATATTTTCATAATTCTATGTGT ATTTTTATTTTGAATAAACTGAAAGAAGTTTTGGGTTTTTAATTTTTTTTCTCCCCGACT CAAAATGCATTGTCATTTACTATAGCCTCTTTTTAAAAATCTGCTAGGGTTAAAAAATAA ATAAACAGAGGCCTATCTTTGCTTTAAATCTGTCCTGTAAAATTTTTATAAATCAAATGA AAGGTGACATTGCCAGAAATAGACCATTAACTTGCACTACTAGGTTAGGGAGGACTTAGG GATGTTTCCTGTGTAGTATGTGCTTTTCTTCCTTTTCTTTACATATGATCAACTCTGTTG GTATTTTACTTATCACATTTCTCAAAGCTAAGGGGGTATACATTCTGGATACTTGGGGGA GGGAATAAATTAAAATTTTCACACTGTGTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 660-776, + strand, RNAz p=0.871572 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 660-776, + strand, RNAz p=0.871572 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 3-247, gnl|bosTau2|chr27 (1327695-1327939) | |
| 3-247, gnl|canFam2|chr11 (60068983-60069715) | |
| 3-247, gnl|dasNov1|scaffold_13163 (55205-55905) | |
| 3-247, gnl|echTel1|scaffold_277197 (45420-46191) | |
| 3-247, gnl|hg17|chr9 (99940207-99940934) | |
| 3-247, gnl|Hg17|chr9 (99940862-99940619) | |
| 3-247, gnl|loxAfr1|scaffold_4458 (115202-115960) | |
| 3-247, gnl|mm7|chr4 (48292778-48293483) | |
| 3-247, gnl|Mm7|chr4 (48293410-48293196) | |
| 3-247, gnl|monDom2|scaffold_80 (1654576-1653798) | |
| 3-247, gnl|oryCun1|scaffold_201715 (256-986) | |
| 3-247, gnl|panTro1|chr11 (84171577-84172304) | |
| 3-247, gnl|rheMac2|chr15 (36122771-36122032) | |
| 3-247, gnl|rn3|chr5 (64967079-64967762) | |
| 475-658, gnl|bosTau2|chr27 (1454217-1454400) | |
| 475-658, gnl|Hg17|chr9 (99864063-99863880) | |
| 475-658, gnl|Mm7|chr4 (48233341-48233158) | |
| 660-776, gnl|bosTau2|chr27 (1455635-1455751) | |
| 660-776, gnl|canFam2|chr11 (60004943-60005047) | |
| 660-776, gnl|dasNov1|scaffold_58147 (5974-6078) | |
| 660-776, gnl|echTel1|scaffold_320778 (6063-6167) | |
| 660-776, gnl|fr1|chrUn (331016699-331016598) | |
| 660-776, gnl|galGal2|chr2 (89179609-89179505) | |
| 660-776, gnl|hg17|chr9 (99862442-99862546) | |
| 660-776, gnl|Hg17|chr9 (99862568-99862452) | |
| 660-776, gnl|loxAfr1|scaffold_4458 (64598-64702) | |
| 660-776, gnl|mm7|chr4 (48231884-48231988) | |
| 660-776, gnl|Mm7|chr4 (48232010-48231894) | |
| 660-776, gnl|monDom2|scaffold_80 (1707545-1707445) | |
| 660-776, gnl|oryCun1|scaffold_214071 (98892-98996) | |
| 660-776, gnl|panTro1|chr11 (84092136-84092240) | |
| 660-776, gnl|rheMac2|chr15 (36199522-36199418) | |
| 660-776, gnl|rn3|chr5 (64906089-64906193) | |
| 660-776, gnl|tetNig1|chr8 (7328630-7328734) | |
| 660-776, gnl|xenTro1|scaffold_219 (7855-7956) | |
| 833-954, gnl|bosTau2|chr27 (1460113-1460234) | |
| 833-954, gnl|canFam2|chr11 (60000751-60000879) | |
| 833-954, gnl|danRer3|chr16 (25672350-25672226) | |
| 833-954, gnl|dasNov1|scaffold_176016 (1009-1117) | |
| 833-954, gnl|echTel1|scaffold_320778 (766-893) | |
| 833-954, gnl|fr1|chrUn (331016982-331016870) | |
| 833-954, gnl|galGal2|chr2 (89184636-89184507) | |
| 833-954, gnl|hg17|chr9 (99858147-99858276) | |
| 833-954, gnl|Hg17|chr9 (99858276-99858155) | |
| 833-954, gnl|loxAfr1|scaffold_4458 (59719-59848) | |
| 833-954, gnl|mm7|chr4 (48222499-48222628) | |
| 833-954, gnl|Mm7|chr4 (48222628-48222507) | |
| 833-954, gnl|monDom2|scaffold_80 (1716546-1716417) | |
| 833-954, gnl|oryCun1|scaffold_182164 (7688-7817) | |
| 833-954, gnl|panTro1|chr11 (84087839-84087968) | |
| 833-954, gnl|rheMac2|chr15 (36203795-36203666) | |
| 833-954, gnl|rn3|chr5 (64890229-64890358) | |
| 833-954, gnl|tetNig1|chr8 (7328362-7328474) | |
| 833-954, gnl|xenTro1|scaffold_219 (4388-4514) | |
| 1060-1204, gnl|bosTau2|chr27 (1463518-1463662) | |
| 1060-1204, gnl|Hg17|chr9 (99848487-99848343) | |
| 1060-1204, gnl|Mm7|chr4 (48218102-48217958) | |
| 1306-1890, gnl|bosTau2|chr27 (1476018-1476609) | |
| 1306-1890, gnl|Hg17|chr9 (99824552-99823971) | |
| 1306-1890, gnl|Mm7|chr4 (48208525-48207929) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-247, gnl|bosTau2|chr27 (1327695-1327939) | |
| 3-247, gnl|canFam2|chr11 (60068983-60069715) | |
| 3-247, gnl|dasNov1|scaffold_13163 (55205-55905) | |
| 3-247, gnl|echTel1|scaffold_277197 (45420-46191) | |
| 3-247, gnl|hg17|chr9 (99940207-99940934) | |
| 3-247, gnl|Hg17|chr9 (99940862-99940619) | |
| 3-247, gnl|loxAfr1|scaffold_4458 (115202-115960) | |
| 3-247, gnl|mm7|chr4 (48292778-48293483) | |
| 3-247, gnl|Mm7|chr4 (48293410-48293196) | |
| 3-247, gnl|monDom2|scaffold_80 (1654576-1653798) | |
| 3-247, gnl|oryCun1|scaffold_201715 (256-986) | |
| 3-247, gnl|panTro1|chr11 (84171577-84172304) | |
| 3-247, gnl|rheMac2|chr15 (36122771-36122032) | |
| 3-247, gnl|rn3|chr5 (64967079-64967762) | |
| 475-658, gnl|bosTau2|chr27 (1454217-1454400) | |
| 475-658, gnl|Hg17|chr9 (99864063-99863880) | |
| 475-658, gnl|Mm7|chr4 (48233341-48233158) | |
| 660-776, gnl|bosTau2|chr27 (1455635-1455751) | |
| 660-776, gnl|canFam2|chr11 (60004943-60005047) | |
| 660-776, gnl|dasNov1|scaffold_58147 (5974-6078) | |
| 660-776, gnl|echTel1|scaffold_320778 (6063-6167) | |
| 660-776, gnl|fr1|chrUn (331016699-331016598) | |
| 660-776, gnl|galGal2|chr2 (89179609-89179505) | |
| 660-776, gnl|hg17|chr9 (99862442-99862546) | |
| 660-776, gnl|Hg17|chr9 (99862568-99862452) | |
| 660-776, gnl|loxAfr1|scaffold_4458 (64598-64702) | |
| 660-776, gnl|mm7|chr4 (48231884-48231988) | |
| 660-776, gnl|Mm7|chr4 (48232010-48231894) | |
| 660-776, gnl|monDom2|scaffold_80 (1707545-1707445) | |
| 660-776, gnl|oryCun1|scaffold_214071 (98892-98996) | |
| 660-776, gnl|panTro1|chr11 (84092136-84092240) | |
| 660-776, gnl|rheMac2|chr15 (36199522-36199418) | |
| 660-776, gnl|rn3|chr5 (64906089-64906193) | |
| 660-776, gnl|tetNig1|chr8 (7328630-7328734) | |
| 660-776, gnl|xenTro1|scaffold_219 (7855-7956) | |
| 833-954, gnl|bosTau2|chr27 (1460113-1460234) | |
| 833-954, gnl|canFam2|chr11 (60000751-60000879) | |
| 833-954, gnl|danRer3|chr16 (25672350-25672226) | |
| 833-954, gnl|dasNov1|scaffold_176016 (1009-1117) | |
| 833-954, gnl|echTel1|scaffold_320778 (766-893) | |
| 833-954, gnl|fr1|chrUn (331016982-331016870) | |
| 833-954, gnl|galGal2|chr2 (89184636-89184507) | |
| 833-954, gnl|hg17|chr9 (99858147-99858276) | |
| 833-954, gnl|Hg17|chr9 (99858276-99858155) | |
| 833-954, gnl|loxAfr1|scaffold_4458 (59719-59848) | |
| 833-954, gnl|mm7|chr4 (48222499-48222628) | |
| 833-954, gnl|Mm7|chr4 (48222628-48222507) | |
| 833-954, gnl|monDom2|scaffold_80 (1716546-1716417) | |
| 833-954, gnl|oryCun1|scaffold_182164 (7688-7817) | |
| 833-954, gnl|panTro1|chr11 (84087839-84087968) | |
| 833-954, gnl|rheMac2|chr15 (36203795-36203666) | |
| 833-954, gnl|rn3|chr5 (64890229-64890358) | |
| 833-954, gnl|tetNig1|chr8 (7328362-7328474) | |
| 833-954, gnl|xenTro1|scaffold_219 (4388-4514) | |
| 1060-1204, gnl|bosTau2|chr27 (1463518-1463662) | |
| 1060-1204, gnl|Hg17|chr9 (99848487-99848343) | |
| 1060-1204, gnl|Mm7|chr4 (48218102-48217958) | |
| 1306-1890, gnl|bosTau2|chr27 (1476018-1476609) | |
| 1306-1890, gnl|Hg17|chr9 (99824552-99823971) | |
| 1306-1890, gnl|Mm7|chr4 (48208525-48207929) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| sug (0.636456) | |
| rec (0.519211) | |
| ski (0.440205) | |
| fli (0.405762) | |
| sag (0.36543) | |
| duo (0.345602) | |
| nco (0.323468) | |
| lin (0.291206) | |
| tra (0.246184) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| sto (0.179824) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.636456) | |
| rec (0.519211) | |
| ski (0.440205) | |
| fli (0.405762) | |
| sag (0.36543) | |
| duo (0.345602) | |
| nco (0.323468) | |
| lin (0.291206) | |
| tra (0.246184) | |
| cty (0.20816) | |
| hea (0.204499) | |
| aor (0.195274) | |
| col (0.195008) | |
| sto (0.179824) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| eje (0.0988338) |