Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H03.5

Sequence:


               
               TATGAGTGAAATTGATGTGTGTATATTTGCAGACATTTCTATTTGTATACAAAATGCTTG
CTAGCCCTAGTCAAGAGGCATCATTTATAAAAGGTATAAACATCAAGGTTCTAAAATTCA
GAAGAGTTTAGAATTGATTAGGAGTTTCCCAAGTTGGGATGTTTTTATACAAGCTTATTT
TGTTTAAGTACTCCACTTGAGTAAGGTTTTGCACTTTTTATCAATGCAGCACCATTCCTT
TTGCTTGTTTTAGATATGTTCATATTTTAGCCTGCTAGTTAGCATAAAGTGACAGTTATG
AGCCATAAGAAAATCTTTATGACTTAATTTTACACAACTGCATTTAACAGTTTAGCTGGG
AAGAAAAAAGTAAAATCAGTCCACTGTACATACTTATGTAGTTGGGTAGCTGATTTTCAC
TACGAACAGTAGTCTCCAGTCCTTGTGTTGGTAAGTATGGGAAGGGTTTTTAATGCATTT
TGTAAGCCAGTTGAGTTTATGAACCTATCTGAAACAATTTAGTCTCTCACGATAATAATT
TTGTGGTTATGCTAAGAGCTGTGTATATATTTTTAGGTGATTCTTACTTTTATTAATCCT
TCTAGGTTAGTGAGGAGGCAGAAAATTTTCATTGTTTTACTTTTTTCTCAGAATATTTTT
AATAAGACTCAACTCCTTAATTCTAGTATAAATGTCCAAATGTGGTAATTATCTATTGAT
TTCATAAGTAAAAGCCCCTTATCAGATTTATGTTCGTAAGAGTGATTGGAGAATTTGGCC
TTCATCTGATTTCTAGAAATGTTGTTTGCTATGGAAACAAAATTTCAAGTGCAAATAATA
GCTTCATTGTGATCCAGTCCTCAGACTTTGAGTTGAATAAAATCTAAAAGAATGTATCCT
TTTGGAACTTAACACTTTAACATCTTGGGGAATGTGGTACTACCAAAATTAGAGGACTGA
CACATCATATGTTGTTGTCTCTGGAAGGTTCGAAAAGGAGCTCCCATCACGTTTTAGACC
CATTTATTGTAGCAAATCTATTTCTCTATATTTTGTCATTCAATGAATTGGAGTCCTGTA
GTATATTGCATTAGTTAGGAGGAAAATGTTTTTAAATGTTCTTTTGATGATGGCCCCAAA
AGTATTTGACACAGCAAGATGCATGTGTTACTGTACTGAGACTATAGAATAATATACAGT
GTCACTAAATTTAAGACCTCTTCCCAGTCTTGCTGCTCCTGGCAAGAAGTTTGGCCTGTG
ACTGCACTTAATGTTTGTGCTCATCAGAAACTGTCAATGTCTGCTTTTCTTTAACTTTGC
AGTCTGTAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGAGTGAAATTGATGTGTGTATATTTGCAGACATTTCTATTTGTATACAAAATGCTTG
CTAGCCCTAGTCAAGAGGCATCATTTATAAAAGGTATAAACATCAAGGTTCTAAAATTCA
GAAGAGTTTAGAATTGATTAGGAGTTTCCCAAGTTGGGATGTTTTTATACAAGCTTATTT
TGTTTAAGTACTCCACTTGAGTAAGGTTTTGCACTTTTTATCAATGCAGCACCATTCCTT
TTGCTTGTTTTAGATATGTTCATATTTTAGCCTGCTAGTTAGCATAAAGTGACAGTTATG
AGCCATAAGAAAATCTTTATGACTTAATTTTACACAACTGCATTTAACAGTTTAGCTGGG
AAGAAAAAAGTAAAATCAGTCCACTGTACATACTTATGTAGTTGGGTAGCTGATTTTCAC
TACGAACAGTAGTCTCCAGTCCTTGTGTTGGTAAGTATGGGAAGGGTTTTTAATGCATTT
TGTAAGCCAGTTGAGTTTATGAACCTATCTGAAACAATTTAGTCTCTCACGATAATAATT
TTGTGGTTATGCTAAGAGCTGTGTATATATTTTTAGGTGATTCTTACTTTTATTAATCCT
TCTAGGTTAGTGAGGAGGCAGAAAATTTTCATTGTTTTACTTTTTTCTCAGAATATTTTT
AATAAGACTCAACTCCTTAATTCTAGTATAAATGTCCAAATGTGGTAATTATCTATTGAT
TTCATAAGTAAAAGCCCCTTATCAGATTTATGTTCGTAAGAGTGATTGGAGAATTTGGCC
TTCATCTGATTTCTAGAAATGTTGTTTGCTATGGAAACAAAATTTCAAGTGCAAATAATA
GCTTCATTGTGATCCAGTCCTCAGACTTTGAGTTGAATAAAATCTAAAAGAATGTATCCT
TTTGGAACTTAACACTTTAACATCTTGGGGAATGTGGTACTACCAAAATTAGAGGACTGA
CACATCATATGTTGTTGTCTCTGGAAGGTTCGAAAAGGAGCTCCCATCACGTTTTAGACC
CATTTATTGTAGCAAATCTATTTCTCTATATTTTGTCATTCAATGAATTGGAGTCCTGTA
GTATATTGCATTAGTTAGGAGGAAAATGTTTTTAAATGTTCTTTTGATGATGGCCCCAAA
AGTATTTGACACAGCAAGATGCATGTGTTACTGTACTGAGACTATAGAATAATATACAGT
GTCACTAAATTTAAGACCTCTTCCCAGTCTTGCTGCTCCTGGCAAGAAGTTTGGCCTGTG
ACTGCACTTAATGTTTGTGCTCATCAGAAACTGTCAATGTCTGCTTTTCTTTAACTTTGC
AGTCTGTAACAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               83-196, - strand, RNAz p=0.725577
               

               
               1208-1327, - strand, RNAz p=0.598787

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-196, - strand, RNAz p=0.725577
               

               
               1208-1327, - strand, RNAz p=0.598787

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1332, gnl|bosTau2|chr1 (57195216-57196510)
               

               
               5-1332, gnl|Hg17|chr3 (180439225-180440550)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1332, gnl|bosTau2|chr1 (57195216-57196510)
               

               
               5-1332, gnl|Hg17|chr3 (180439225-180440550)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	83-196, - strand, RNAz p=0.725577
	1208-1327, - strand, RNAz p=0.598787

	5-1332, gnl\|bosTau2\|chr1 (57195216-57196510)
	5-1332, gnl\|Hg17\|chr3 (180439225-180440550)

	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	spl (0.143184)
	kid (0.129735)
	thg (0.126791)