Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H14.5

Sequence:


               
               AGAACATTCAGTCCCTCACCTCCTGACGGCCCGCCTCCCGCGTCGGGCGCCGCGGGAGAG
CAGCAGCATGCGCTCCGGAGAAGGCCTCCGACCCGAGCCCCCGCCTCCTTGCCGGAGCCT
CGGGGCAGCCGCCCCAGACGCTTCCGTAGAGCGTGCCGCACGCCTGCACGTTGTCAGTAG
CCCTGGAGAGCTGAGCATGTCTTATAAAAACAAAAGAACCAGAACAAAACTGACTTAGAA
GACGGTCTGCGGGGCGCGGAAAGACCGGCCGTCTCTAGGGGAGACAGAATGCTCCTCCGG
GGGGCTCCGGCTGATGGCCGTGGTGGTGTGTGAGGTGCGCCGGCTCCCCGCCCCCAGGGA
GCGAGCCGCAGGGCCTGGGCAGGTGGCAGTTGTGTGGAACAGGAGCTCCGGCGGGGCCCA
CGTCTCTCCCTTCTCACTTGGATTTTGGACAAAGGCCTTGTTCCCCTCCTCCCTCTCACA
GCGTGGCTGTTCTTCTCTAGTGCCAAGCGTGGCCGTCCCCGACAGTGACAGCGGGCCGCA
AAGCCTTGAGGACAATGAACACAGAGGACAGCTGGGCGCTCGGCTGTTCCTCTCTAGGTT
CCACTGTTGTTTAAGTAAAGTCAGGAAAATGCGTGTTACCCAGAGCCAAGGGGCCGCTCC
CGGTGGGGCCCCCCAGCGCTGGACTGAAGATGAGCACTTCTGATTAAAGCCTGGTCTGAA
GGACGTCCCCATCTGAGGTGACCTGCGTGGTTTATGCAGGCGCCCCTCTTGGAAGGGGTG
AAGCATGGGAGGGGTTGTGCAGGCGAGTTGGACGCCCCTTTGTGGGGCAGGGGAAGCTTT
GGAAGCATCACCTGTGCGCACAGAGCCTCGCTTTAGAGACCAGGCTCTGCAGGCCTCCGG
CGTGGGGCTGGGTGCTGGCCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACATTCAGTCCCTCACCTCCTGACGGCCCGCCTCCCGCGTCGGGCGCCGCGGGAGAG
CAGCAGCATGCGCTCCGGAGAAGGCCTCCGACCCGAGCCCCCGCCTCCTTGCCGGAGCCT
CGGGGCAGCCGCCCCAGACGCTTCCGTAGAGCGTGCCGCACGCCTGCACGTTGTCAGTAG
CCCTGGAGAGCTGAGCATGTCTTATAAAAACAAAAGAACCAGAACAAAACTGACTTAGAA
GACGGTCTGCGGGGCGCGGAAAGACCGGCCGTCTCTAGGGGAGACAGAATGCTCCTCCGG
GGGGCTCCGGCTGATGGCCGTGGTGGTGTGTGAGGTGCGCCGGCTCCCCGCCCCCAGGGA
GCGAGCCGCAGGGCCTGGGCAGGTGGCAGTTGTGTGGAACAGGAGCTCCGGCGGGGCCCA
CGTCTCTCCCTTCTCACTTGGATTTTGGACAAAGGCCTTGTTCCCCTCCTCCCTCTCACA
GCGTGGCTGTTCTTCTCTAGTGCCAAGCGTGGCCGTCCCCGACAGTGACAGCGGGCCGCA
AAGCCTTGAGGACAATGAACACAGAGGACAGCTGGGCGCTCGGCTGTTCCTCTCTAGGTT
CCACTGTTGTTTAAGTAAAGTCAGGAAAATGCGTGTTACCCAGAGCCAAGGGGCCGCTCC
CGGTGGGGCCCCCCAGCGCTGGACTGAAGATGAGCACTTCTGATTAAAGCCTGGTCTGAA
GGACGTCCCCATCTGAGGTGACCTGCGTGGTTTATGCAGGCGCCCCTCTTGGAAGGGGTG
AAGCATGGGAGGGGTTGTGCAGGCGAGTTGGACGCCCCTTTGTGGGGCAGGGGAAGCTTT
GGAAGCATCACCTGTGCGCACAGAGCCTCGCTTTAGAGACCAGGCTCTGCAGGCCTCCGG
CGTGGGGCTGGGTGCTGGCCCTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               572-671, + strand, RNAz p=0.939532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               572-671, + strand, RNAz p=0.939532

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-254, gnl|bosTau2|chr18 (13459424-13459161)
               

               
               1-254, gnl|canFam2|chr5 (68731440-68731152)
               

               
               1-254, gnl|galGal2|chr11 (18117296-18117614)
               

               
               1-254, gnl|hg17|chr16 (85922054-85922335)
               

               
               1-254, gnl|Hg17|chr16 (85922420-85922121)
               

               
               1-254, gnl|loxAfr1|scaffold_89719 (4831-4596)
               

               
               1-254, gnl|mm7|chr8 (120194145-120194381)
               

               
               1-254, gnl|Mm7|chr8 (120194446-120194186)
               

               
               1-254, gnl|monDom2|scaffold_23 (11287755-11287465)
               

               
               1-254, gnl|panTro1|chr18 (80876140-80876421)
               

               
               1-254, gnl|rheMac2|chr20 (85452113-85452395)
               


               
               452-708, gnl|bosTau2|chr18 (13457747-13457499)
               

               
               452-708, gnl|canFam2|chr5 (68734714-68732440)
               

               
               452-708, gnl|hg17|chr16 (85918808-85921064)
               

               
               452-708, gnl|Hg17|chr16 (85920731-85920460)
               

               
               452-708, gnl|hg17|chr4 (188155408-188155634)
               

               
               452-708, gnl|panTro1|chr18 (80872896-80875150)
               

               
               452-708, gnl|panTro1|chr3 (206382225-206382451)
               

               
               452-708, gnl|rheMac2|chr20 (85448894-85451124)
               

               
               452-708, gnl|rheMac2|chr5 (178978795-178979021)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr18 (13459424-13459161)
               

               
               1-254, gnl|canFam2|chr5 (68731440-68731152)
               

               
               1-254, gnl|galGal2|chr11 (18117296-18117614)
               

               
               1-254, gnl|hg17|chr16 (85922054-85922335)
               

               
               1-254, gnl|Hg17|chr16 (85922420-85922121)
               

               
               1-254, gnl|loxAfr1|scaffold_89719 (4831-4596)
               

               
               1-254, gnl|mm7|chr8 (120194145-120194381)
               

               
               1-254, gnl|Mm7|chr8 (120194446-120194186)
               

               
               1-254, gnl|monDom2|scaffold_23 (11287755-11287465)
               

               
               1-254, gnl|panTro1|chr18 (80876140-80876421)
               

               
               1-254, gnl|rheMac2|chr20 (85452113-85452395)
               


               
               452-708, gnl|bosTau2|chr18 (13457747-13457499)
               

               
               452-708, gnl|canFam2|chr5 (68734714-68732440)
               

               
               452-708, gnl|hg17|chr16 (85918808-85921064)
               

               
               452-708, gnl|Hg17|chr16 (85920731-85920460)
               

               
               452-708, gnl|hg17|chr4 (188155408-188155634)
               

               
               452-708, gnl|panTro1|chr18 (80872896-80875150)
               

               
               452-708, gnl|panTro1|chr3 (206382225-206382451)
               

               
               452-708, gnl|rheMac2|chr20 (85448894-85451124)
               

               
               452-708, gnl|rheMac2|chr5 (178978795-178979021)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fty (0.351679)
               

               
               fce (0.271592)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.351679)
               

               
               fce (0.271592)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-254, gnl\|bosTau2\|chr18 (13459424-13459161)
	1-254, gnl\|canFam2\|chr5 (68731440-68731152)
	1-254, gnl\|galGal2\|chr11 (18117296-18117614)
	1-254, gnl\|hg17\|chr16 (85922054-85922335)
	1-254, gnl\|Hg17\|chr16 (85922420-85922121)
	1-254, gnl\|loxAfr1\|scaffold_89719 (4831-4596)
	1-254, gnl\|mm7\|chr8 (120194145-120194381)
	1-254, gnl\|Mm7\|chr8 (120194446-120194186)
	1-254, gnl\|monDom2\|scaffold_23 (11287755-11287465)
	1-254, gnl\|panTro1\|chr18 (80876140-80876421)
	1-254, gnl\|rheMac2\|chr20 (85452113-85452395)

	452-708, gnl\|bosTau2\|chr18 (13457747-13457499)
	452-708, gnl\|canFam2\|chr5 (68734714-68732440)
	452-708, gnl\|hg17\|chr16 (85918808-85921064)
	452-708, gnl\|Hg17\|chr16 (85920731-85920460)
	452-708, gnl\|hg17\|chr4 (188155408-188155634)
	452-708, gnl\|panTro1\|chr18 (80872896-80875150)
	452-708, gnl\|panTro1\|chr3 (206382225-206382451)
	452-708, gnl\|rheMac2\|chr20 (85448894-85451124)
	452-708, gnl\|rheMac2\|chr5 (178978795-178979021)

	fty (0.351679)
	fce (0.271592)
	mas (0.210305)
	fcc (0.197785)
	fbs (0.175346)
	nco (0.161734)
	hlv (0.139256)
	ssp (0.13552)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)