Non-Coding RNA Search

Ss1.1-Pig4-TMW8059H15.5

Sequence:


               
               TAGGTCCCCCGAGGCTGCGGCTGCCTGGGCAAGAGGTCGCCATTCATTCCCCACGTGTGG
TTGAAGAGCGAGGGCCCCGTCAGGGGCCCTTTGGAAGTCCGTGCTGGTCCCTACAGAAGA
GGCGTCCTGCGTGGACCCTGGGCTGCTGCCGGCCTTCTCAGATCGGAGGTCCTCCTCCTC
CTTCCACCTGCAGCTCAGGTGACCGGCGCCATGGCTTTTCCCCATCGGCCGGACGCGCCA
GAGCTGCCTGACTTCTCCATGCTCAAGAGACTGGCCCGAGACCAGCTCATCTATCTGCTG
GAGCAGCTTCCAGGAAAAAAGGACTTGTTCATCGAGGCAGATCTCATGAGCCCTTTGGAT
CGAATTGCTAATGTCTCCATCCTGAAGCAACACGAAGTAGACAAGCTGTACAAAGTGGAG
AATAAACCAGCCTTCAGCTCCAGTGAACAATTGTGCTTCTTGGTCAGACCCCGCATCAAG
AACATGCGGTACATTGCCAATCTTGTCAATGCTGACAAATTGGCTGGCCGAACTCGAAAA
TACAAAGTGATCTTCAGCCCTCAGAAGTTTTACGCATGTGAGATGGTGCTTGAGGAAGAG
GGCATCTATGGAGGTGAGGAGATGAATGCAGGGGAACGTGGAGGTCGGGTGGGAGAAGGC
TGCTCCCCTGCCCCCTCTCCTCCTTTTCCCTGTCTCATTCCTGGTGACCCAGCAGGAGGA
GAGGGTCCTGAGAATGGGAAGCCAGACCCCACATCCGAACACCAGTGGGATGATGAGGAG
GTGCCCGGGTGAGAGCTGCAGATCACTGGCTGCAGTCTCCTTACCTTCCAAGACTTCCAC
GGGGAAAACCTCTGCCTTCCCTCCTCTGTGTTTTCCTTACTCCGTCCTCCGTGACACAGA
ACGGATCACAGTACCCTCTGCCGGAAGTGCTGCAGGGGCTCAGAATAGAGCCCAGGATCC
GCAGCCTGGCCTCCTGCGCCTCTACAGTCTGGCCCCTTCCTGGCCCTTTAGCCTTTGTGT
GCGACTCCTTTCTCCTGACCCACTGCCTTCCCGCCACAGGGACTTGATACATCTGTTCAT
GCTGCCTGGACTGTTCCTCCCCCTATGGCTTTTGGCCTACCCAAATCATACTCCCATTCT
AGGCCTAAATGTCACTTCCTTAAGAAAGTCTTTCCCATACCCCTAGTTGAGATTAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGTCCCCCGAGGCTGCGGCTGCCTGGGCAAGAGGTCGCCATTCATTCCCCACGTGTGG
TTGAAGAGCGAGGGCCCCGTCAGGGGCCCTTTGGAAGTCCGTGCTGGTCCCTACAGAAGA
GGCGTCCTGCGTGGACCCTGGGCTGCTGCCGGCCTTCTCAGATCGGAGGTCCTCCTCCTC
CTTCCACCTGCAGCTCAGGTGACCGGCGCCATGGCTTTTCCCCATCGGCCGGACGCGCCA
GAGCTGCCTGACTTCTCCATGCTCAAGAGACTGGCCCGAGACCAGCTCATCTATCTGCTG
GAGCAGCTTCCAGGAAAAAAGGACTTGTTCATCGAGGCAGATCTCATGAGCCCTTTGGAT
CGAATTGCTAATGTCTCCATCCTGAAGCAACACGAAGTAGACAAGCTGTACAAAGTGGAG
AATAAACCAGCCTTCAGCTCCAGTGAACAATTGTGCTTCTTGGTCAGACCCCGCATCAAG
AACATGCGGTACATTGCCAATCTTGTCAATGCTGACAAATTGGCTGGCCGAACTCGAAAA
TACAAAGTGATCTTCAGCCCTCAGAAGTTTTACGCATGTGAGATGGTGCTTGAGGAAGAG
GGCATCTATGGAGGTGAGGAGATGAATGCAGGGGAACGTGGAGGTCGGGTGGGAGAAGGC
TGCTCCCCTGCCCCCTCTCCTCCTTTTCCCTGTCTCATTCCTGGTGACCCAGCAGGAGGA
GAGGGTCCTGAGAATGGGAAGCCAGACCCCACATCCGAACACCAGTGGGATGATGAGGAG
GTGCCCGGGTGAGAGCTGCAGATCACTGGCTGCAGTCTCCTTACCTTCCAAGACTTCCAC
GGGGAAAACCTCTGCCTTCCCTCCTCTGTGTTTTCCTTACTCCGTCCTCCGTGACACAGA
ACGGATCACAGTACCCTCTGCCGGAAGTGCTGCAGGGGCTCAGAATAGAGCCCAGGATCC
GCAGCCTGGCCTCCTGCGCCTCTACAGTCTGGCCCCTTCCTGGCCCTTTAGCCTTTGTGT
GCGACTCCTTTCTCCTGACCCACTGCCTTCCCGCCACAGGGACTTGATACATCTGTTCAT
GCTGCCTGGACTGTTCCTCCCCCTATGGCTTTTGGCCTACCCAAATCATACTCCCATTCT
AGGCCTAAATGTCACTTCCTTAAGAAAGTCTTTCCCATACCCCTAGTTGAGATTAGATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47192318|emb|CAF87197.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47192318|emb|CAF87197.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               698-931, - strand, RNAz p=0.953648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-931, - strand, RNAz p=0.953648

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-306, gnl|bosTau2|chr21 (16211526-16211217)
               

               
               13-306, gnl|Hg17|chr15 (89366674-89366388)
               

               
               13-306, gnl|Mm7|chr7 (76138588-76138887)
               


               
               566-1200, gnl|bosTau2|chr21 (12059928-12060554)
               

               
               566-1200, gnl|Hg17|chr15 (89354082-89353019)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-306, gnl|bosTau2|chr21 (16211526-16211217)
               

               
               13-306, gnl|Hg17|chr15 (89366674-89366388)
               

               
               13-306, gnl|Mm7|chr7 (76138588-76138887)
               


               
               566-1200, gnl|bosTau2|chr21 (12059928-12060554)
               

               
               566-1200, gnl|Hg17|chr15 (89354082-89353019)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	13-306, gnl\|bosTau2\|chr21 (16211526-16211217)
	13-306, gnl\|Hg17\|chr15 (89366674-89366388)
	13-306, gnl\|Mm7\|chr7 (76138588-76138887)

	566-1200, gnl\|bosTau2\|chr21 (12059928-12060554)
	566-1200, gnl\|Hg17\|chr15 (89354082-89353019)